Ggra10080.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10080.t1
Unique NameGgra10080.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000066_piloncontigtig00000066_pilon:51542..52954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10080Ggra10080Gracilaria gracilis GNS1m malegenetig00000066_pilon 51542..52954 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10080.t1.stop1Ggra10080.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000066_pilon 51542..51544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10080.t1.CDS1Ggra10080.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000066_pilon 51542..52954 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10080.t1.exon1Ggra10080.t1.exon1Gracilaria gracilis GNS1m maleexontig00000066_pilon 51542..52954 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10080.t1.start1Ggra10080.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000066_pilon 52952..52954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10080.t1Ggra10080.t1Gracilaria gracilis GNS1m malepolypeptidetig00000066_pilon 51542..52954 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10080.t1 ID=Ggra10080.t1|Name=Ggra10080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MNLSLVFFCAILLLCSVNAQRPARQRPERLRPERPAAPGLSREALFGRAR
GLANAPGTPLNSAQRETARQRLQRLRGGIPDAQPGEEPNIEELYNPMRDA
RCFNAPYDTSVPQSKLSSLFSDYVKIFNWGFNMPPSSPIFSFSENGVTNN
RFPGMCLRMAFHDNSIDPKFGEFSSYVTQRISGDNEWTGPNRFLETSGGD
ASVLTCRFERFHPNQNYDQTASRILFAFQTRIVPGLRGQSLMDKYQMSYA
DALHNCALAAVSWLNPGEGSSAKNQMRFGRKDACFVSEDARLAQDELSLD
GKNPLCGPTELLPPVTFSAKQSNQWFTSRGLPARQWLSFMGTHTTFDNFG
RTETLRRMPVPGDDYFTNYVGVPVHKPDVAAAEGDPENPGCDWIVNGEET
FWPMSQADCALGIDVISNDPGLDQLENVMNSYISAPASWIRSDLVCAMRL
LGGRANERCDGTNPLFGSVY*
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spliced messenger RNA

>Ggra10080.t1 ID=Ggra10080.t1|Name=Ggra10080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000066_pilon:51542..52954- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTGTCGCTGGTATTTTTCTGCGCCATCCTTCTGCTGTGCTCGGT
CAATGCACAGCGTCCCGCGAGACAGCGTCCTGAGAGACTCCGTCCTGAGA
GACCAGCCGCCCCAGGGCTCAGCCGAGAAGCACTATTTGGAAGGGCCCGA
GGTTTAGCAAATGCCCCTGGAACGCCCCTCAACTCTGCCCAAAGAGAGAC
CGCCCGCCAACGTTTGCAACGGCTCAGAGGCGGAATTCCTGATGCCCAAC
CCGGTGAGGAACCCAATATTGAGGAATTGTACAACCCAATGCGAGATGCC
CGGTGTTTTAATGCCCCGTATGACACTTCCGTACCGCAGTCCAAACTCTC
ATCTTTGTTCTCTGACTATGTCAAGATATTCAACTGGGGATTCAATATGC
CTCCTAGCTCACCAATATTCTCGTTCTCTGAGAATGGTGTGACCAACAAC
AGATTTCCCGGCATGTGCCTCCGAATGGCATTCCATGATAACTCCATTGA
TCCAAAATTTGGTGAGTTTTCCTCATATGTTACCCAACGCATCAGTGGTG
ATAACGAATGGACGGGTCCGAATCGGTTCTTGGAAACATCTGGAGGCGAC
GCATCCGTGTTGACCTGTCGCTTTGAGAGATTTCATCCGAACCAGAACTA
CGATCAAACCGCATCACGCATTCTTTTTGCTTTCCAAACACGCATTGTTC
CCGGATTGAGAGGTCAATCTCTCATGGACAAGTATCAAATGTCATACGCG
GACGCACTTCACAACTGTGCACTCGCAGCCGTTTCGTGGCTGAATCCGGG
GGAAGGCAGCAGCGCCAAGAATCAAATGCGGTTTGGTAGAAAAGATGCAT
GCTTCGTTTCTGAAGATGCGAGACTAGCCCAAGATGAGCTGAGTTTGGAT
GGGAAGAACCCTCTCTGCGGGCCGACCGAGCTTTTACCTCCGGTGACATT
CAGTGCTAAACAATCAAACCAATGGTTCACCTCTCGTGGATTACCTGCTC
GCCAATGGCTATCCTTCATGGGCACGCACACTACGTTTGACAACTTTGGG
AGAACCGAGACGCTGCGAAGGATGCCTGTACCTGGAGATGACTACTTTAC
CAACTACGTGGGTGTCCCAGTGCACAAGCCAGATGTTGCGGCGGCCGAAG
GCGATCCTGAGAATCCTGGATGTGATTGGATTGTGAATGGGGAGGAAACG
TTCTGGCCAATGTCACAGGCTGATTGCGCACTCGGGATTGACGTTATTTC
GAATGATCCTGGTCTGGACCAACTAGAAAATGTGATGAATAGTTACATCA
GCGCCCCAGCTTCCTGGATTCGAAGCGACTTGGTGTGTGCCATGCGTTTG
CTGGGTGGACGTGCCAACGAACGATGTGATGGCACAAATCCTTTGTTTGG
TTCTGTGTATTAA
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protein sequence of Ggra10080.t1

>Ggra10080.t1 ID=Ggra10080.t1|Name=Ggra10080.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MNLSLVFFCAILLLCSVNAQRPARQRPERLRPERPAAPGLSREALFGRAR
GLANAPGTPLNSAQRETARQRLQRLRGGIPDAQPGEEPNIEELYNPMRDA
RCFNAPYDTSVPQSKLSSLFSDYVKIFNWGFNMPPSSPIFSFSENGVTNN
RFPGMCLRMAFHDNSIDPKFGEFSSYVTQRISGDNEWTGPNRFLETSGGD
ASVLTCRFERFHPNQNYDQTASRILFAFQTRIVPGLRGQSLMDKYQMSYA
DALHNCALAAVSWLNPGEGSSAKNQMRFGRKDACFVSEDARLAQDELSLD
GKNPLCGPTELLPPVTFSAKQSNQWFTSRGLPARQWLSFMGTHTTFDNFG
RTETLRRMPVPGDDYFTNYVGVPVHKPDVAAAEGDPENPGCDWIVNGEET
FWPMSQADCALGIDVISNDPGLDQLENVMNSYISAPASWIRSDLVCAMRL
LGGRANERCDGTNPLFGSVY*
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mRNA from alignment at tig00000066_pilon:51542..52954-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10080.t1 ID=Ggra10080.t1|Name=Ggra10080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000066_pilon:51542..52954- (Gracilaria gracilis GNS1m male)
ATGAATCTGTCGCTGGTATTTTTCTGCGCCATCCTTCTGCTGTGCTCGGT
CAATGCACAGCGTCCCGCGAGACAGCGTCCTGAGAGACTCCGTCCTGAGA
GACCAGCCGCCCCAGGGCTCAGCCGAGAAGCACTATTTGGAAGGGCCCGA
GGTTTAGCAAATGCCCCTGGAACGCCCCTCAACTCTGCCCAAAGAGAGAC
CGCCCGCCAACGTTTGCAACGGCTCAGAGGCGGAATTCCTGATGCCCAAC
CCGGTGAGGAACCCAATATTGAGGAATTGTACAACCCAATGCGAGATGCC
CGGTGTTTTAATGCCCCGTATGACACTTCCGTACCGCAGTCCAAACTCTC
ATCTTTGTTCTCTGACTATGTCAAGATATTCAACTGGGGATTCAATATGC
CTCCTAGCTCACCAATATTCTCGTTCTCTGAGAATGGTGTGACCAACAAC
AGATTTCCCGGCATGTGCCTCCGAATGGCATTCCATGATAACTCCATTGA
TCCAAAATTTGGTGAGTTTTCCTCATATGTTACCCAACGCATCAGTGGTG
ATAACGAATGGACGGGTCCGAATCGGTTCTTGGAAACATCTGGAGGCGAC
GCATCCGTGTTGACCTGTCGCTTTGAGAGATTTCATCCGAACCAGAACTA
CGATCAAACCGCATCACGCATTCTTTTTGCTTTCCAAACACGCATTGTTC
CCGGATTGAGAGGTCAATCTCTCATGGACAAGTATCAAATGTCATACGCG
GACGCACTTCACAACTGTGCACTCGCAGCCGTTTCGTGGCTGAATCCGGG
GGAAGGCAGCAGCGCCAAGAATCAAATGCGGTTTGGTAGAAAAGATGCAT
GCTTCGTTTCTGAAGATGCGAGACTAGCCCAAGATGAGCTGAGTTTGGAT
GGGAAGAACCCTCTCTGCGGGCCGACCGAGCTTTTACCTCCGGTGACATT
CAGTGCTAAACAATCAAACCAATGGTTCACCTCTCGTGGATTACCTGCTC
GCCAATGGCTATCCTTCATGGGCACGCACACTACGTTTGACAACTTTGGG
AGAACCGAGACGCTGCGAAGGATGCCTGTACCTGGAGATGACTACTTTAC
CAACTACGTGGGTGTCCCAGTGCACAAGCCAGATGTTGCGGCGGCCGAAG
GCGATCCTGAGAATCCTGGATGTGATTGGATTGTGAATGGGGAGGAAACG
TTCTGGCCAATGTCACAGGCTGATTGCGCACTCGGGATTGACGTTATTTC
GAATGATCCTGGTCTGGACCAACTAGAAAATGTGATGAATAGTTACATCA
GCGCCCCAGCTTCCTGGATTCGAAGCGACTTGGTGTGTGCCATGCGTTTG
CTGGGTGGACGTGCCAACGAACGATGTGATGGCACAAATCCTTTGTTTGG
TTCTGTGTATTAA
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Coding sequence (CDS) from alignment at tig00000066_pilon:51542..52954-

>Ggra10080.t1 ID=Ggra10080.t1|Name=Ggra10080.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000066_pilon:51542..52954- (Gracilaria gracilis GNS1m male)
ATGAATCTGTCGCTGGTATTTTTCTGCGCCATCCTTCTGCTGTGCTCGGT
CAATGCACAGCGTCCCGCGAGACAGCGTCCTGAGAGACTCCGTCCTGAGA
GACCAGCCGCCCCAGGGCTCAGCCGAGAAGCACTATTTGGAAGGGCCCGA
GGTTTAGCAAATGCCCCTGGAACGCCCCTCAACTCTGCCCAAAGAGAGAC
CGCCCGCCAACGTTTGCAACGGCTCAGAGGCGGAATTCCTGATGCCCAAC
CCGGTGAGGAACCCAATATTGAGGAATTGTACAACCCAATGCGAGATGCC
CGGTGTTTTAATGCCCCGTATGACACTTCCGTACCGCAGTCCAAACTCTC
ATCTTTGTTCTCTGACTATGTCAAGATATTCAACTGGGGATTCAATATGC
CTCCTAGCTCACCAATATTCTCGTTCTCTGAGAATGGTGTGACCAACAAC
AGATTTCCCGGCATGTGCCTCCGAATGGCATTCCATGATAACTCCATTGA
TCCAAAATTTGGTGAGTTTTCCTCATATGTTACCCAACGCATCAGTGGTG
ATAACGAATGGACGGGTCCGAATCGGTTCTTGGAAACATCTGGAGGCGAC
GCATCCGTGTTGACCTGTCGCTTTGAGAGATTTCATCCGAACCAGAACTA
CGATCAAACCGCATCACGCATTCTTTTTGCTTTCCAAACACGCATTGTTC
CCGGATTGAGAGGTCAATCTCTCATGGACAAGTATCAAATGTCATACGCG
GACGCACTTCACAACTGTGCACTCGCAGCCGTTTCGTGGCTGAATCCGGG
GGAAGGCAGCAGCGCCAAGAATCAAATGCGGTTTGGTAGAAAAGATGCAT
GCTTCGTTTCTGAAGATGCGAGACTAGCCCAAGATGAGCTGAGTTTGGAT
GGGAAGAACCCTCTCTGCGGGCCGACCGAGCTTTTACCTCCGGTGACATT
CAGTGCTAAACAATCAAACCAATGGTTCACCTCTCGTGGATTACCTGCTC
GCCAATGGCTATCCTTCATGGGCACGCACACTACGTTTGACAACTTTGGG
AGAACCGAGACGCTGCGAAGGATGCCTGTACCTGGAGATGACTACTTTAC
CAACTACGTGGGTGTCCCAGTGCACAAGCCAGATGTTGCGGCGGCCGAAG
GCGATCCTGAGAATCCTGGATGTGATTGGATTGTGAATGGGGAGGAAACG
TTCTGGCCAATGTCACAGGCTGATTGCGCACTCGGGATTGACGTTATTTC
GAATGATCCTGGTCTGGACCAACTAGAAAATGTGATGAATAGTTACATCA
GCGCCCCAGCTTCCTGGATTCGAAGCGACTTGGTGTGTGCCATGCGTTTG
CTGGGTGGACGTGCCAACGAACGATGTGATGGCACAAATCCTTTGTTTGG
TTCTGTGTATTAA
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