Ggra10074.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10074.t1
Unique NameGgra10074.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:445571..446704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra008452.1-P
PFAMsRVT_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve
Max annot lvl35493|Streptophyta
Evalue1.33e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GHHH@35493|Streptophyta
DescriptionMitochondrial protein
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10074Ggra10074Gracilaria gracilis GNS1m malegenetig00000862_pilon 445571..446704 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10074.t1.start1Ggra10074.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 445571..445573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10074.t1.CDS1Ggra10074.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 445571..446704 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10074.t1.exon1Ggra10074.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 445571..446704 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10074.t1.stop1Ggra10074.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 446702..446704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10074.t1Ggra10074.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 445571..446704 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10074.t1 ID=Ggra10074.t1|Name=Ggra10074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MVANAEPVVISLRLPRAATMTTAIIVVVVVTTQETVTNANEKSLAITTTD
DPQRDDNRRSSKGRQPYDRHSSGSSRQYGCYHNGKRQSNWNSGFAPSRDG
NGSRNSNPQAYVVQRRGDSPPSPGFNCNMAKFESNIALLSHSKVDSPYID
SEATHHFFHSCKALIRYERIDIKNAQAASGAARLVGKGHVWIPLNKGTVV
AAYRAPAFQSNIRSVGVLSADLMVVFTSTICPYNGCFIMDPHRNQEIIWE
TKIYQGLYVMDLSDRDKQVMVVNASKSNQGLALEWHGRTGHLPPNRYQNL
AKTFQSVSCFQRSILDSLTCVPCLTGKMKRNPLVARSRSVSTSSPLELIH
VDISGKISQSTQWPFWTTIVRSRTSSS*
back to top

spliced messenger RNA

>Ggra10074.t1 ID=Ggra10074.t1|Name=Ggra10074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000862_pilon:445571..446704+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggtcgcaaacgccgaacccgtggtaattagtcttcggctaccaagagc
cgccacgatgaccactgctattattgtggtcgtcgtggtgactacgcaag
agactgttacaaacgcaaacgagaagagtctggcaataacgacaaccgac
gatcctcaaagggacgacaaccgacgatcctcaaagggacgacaaccgta
cgatcgtcacagcagtggttcgagtcggcaatatggctgttaccataatg
gaaaacgtcagtccaactggaactcaggctttgcaccaagtagggatgga
aatggcagtcgtaactccaaccctcaagcgtatgtcgtgcaaaggcgtgg
ggattcgccaccctcgcctggctttaactgtaacatggccaagttcgaga
gcaatattgctctcctctcccactctaaggtggactcaccctatatcgac
tcagaagccacgcaccacttcttccattcgtgtaaggctctcattcgcta
tgaacgcatcgacatcaagaatgctcaagccgcctctggagcagctcgac
tggttggaaagggtcacgtttggatacctttaaataagggtactgttgtt
gcagcttatcgcgccccagcgttccagtctaacatacgttcggttggcgt
gttaagtgctgacctcatggtggtgttcacctctaccatctgcccgtaca
acggatgtttcatcatggatccccatcggaatcaggagatcatttgggag
accaaaatatatcagggtctctacgttatggacctcagtgatagggacaa
acaggttatggttgtcaacgcaagcaaaagcaatcaggggcttgctttgg
aatggcatggtcgaactggtcacctgcctccgaataggtaccagaatctc
gccaaaacctttcaatccgtttcctgctttcaacgctccattcttgactc
gctgacatgcgttccttgtctcactggcaagatgaaacggaacccactag
tcgctcgatcgcgatccgtttcaacttccagtcctttggaactcattcat
gtagacatatctggaaagatttcgcaatctacgcaatggccattctggac
gaccatagttcgaagtcggacgtcttcctcctga
back to top

protein sequence of Ggra10074.t1

>Ggra10074.t1 ID=Ggra10074.t1|Name=Ggra10074.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MVANAEPVVISLRLPRAATMTTAIIVVVVVTTQETVTNANEKSLAITTTD
DPQRDDNRRSSKGRQPYDRHSSGSSRQYGCYHNGKRQSNWNSGFAPSRDG
NGSRNSNPQAYVVQRRGDSPPSPGFNCNMAKFESNIALLSHSKVDSPYID
SEATHHFFHSCKALIRYERIDIKNAQAASGAARLVGKGHVWIPLNKGTVV
AAYRAPAFQSNIRSVGVLSADLMVVFTSTICPYNGCFIMDPHRNQEIIWE
TKIYQGLYVMDLSDRDKQVMVVNASKSNQGLALEWHGRTGHLPPNRYQNL
AKTFQSVSCFQRSILDSLTCVPCLTGKMKRNPLVARSRSVSTSSPLELIH
VDISGKISQSTQWPFWTTIVRSRTSSS*
back to top

mRNA from alignment at tig00000862_pilon:445571..446704+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10074.t1 ID=Ggra10074.t1|Name=Ggra10074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000862_pilon:445571..446704+ (Gracilaria gracilis GNS1m male)
atggtcgcaaacgccgaacccgtggtaattagtcttcggctaccaagagc
cgccacgatgaccactgctattattgtggtcgtcgtggtgactacgcaag
agactgttacaaacgcaaacgagaagagtctggcaataacgacaaccgac
gatcctcaaagggacgacaaccgacgatcctcaaagggacgacaaccgta
cgatcgtcacagcagtggttcgagtcggcaatatggctgttaccataatg
gaaaacgtcagtccaactggaactcaggctttgcaccaagtagggatgga
aatggcagtcgtaactccaaccctcaagcgtatgtcgtgcaaaggcgtgg
ggattcgccaccctcgcctggctttaactgtaacatggccaagttcgaga
gcaatattgctctcctctcccactctaaggtggactcaccctatatcgac
tcagaagccacgcaccacttcttccattcgtgtaaggctctcattcgcta
tgaacgcatcgacatcaagaatgctcaagccgcctctggagcagctcgac
tggttggaaagggtcacgtttggatacctttaaataagggtactgttgtt
gcagcttatcgcgccccagcgttccagtctaacatacgttcggttggcgt
gttaagtgctgacctcatggtggtgttcacctctaccatctgcccgtaca
acggatgtttcatcatggatccccatcggaatcaggagatcatttgggag
accaaaatatatcagggtctctacgttatggacctcagtgatagggacaa
acaggttatggttgtcaacgcaagcaaaagcaatcaggggcttgctttgg
aatggcatggtcgaactggtcacctgcctccgaataggtaccagaatctc
gccaaaacctttcaatccgtttcctgctttcaacgctccattcttgactc
gctgacatgcgttccttgtctcactggcaagatgaaacggaacccactag
tcgctcgatcgcgatccgtttcaacttccagtcctttggaactcattcat
gtagacatatctggaaagatttcgcaatctacgcaatggccattctggac
gaccatagttcgaagtcggacgtcttcctcctga
back to top

Coding sequence (CDS) from alignment at tig00000862_pilon:445571..446704+

>Ggra10074.t1 ID=Ggra10074.t1|Name=Ggra10074.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000862_pilon:445571..446704+ (Gracilaria gracilis GNS1m male)
atggtcgcaaacgccgaacccgtggtaattagtcttcggctaccaagagc
cgccacgatgaccactgctattattgtggtcgtcgtggtgactacgcaag
agactgttacaaacgcaaacgagaagagtctggcaataacgacaaccgac
gatcctcaaagggacgacaaccgacgatcctcaaagggacgacaaccgta
cgatcgtcacagcagtggttcgagtcggcaatatggctgttaccataatg
gaaaacgtcagtccaactggaactcaggctttgcaccaagtagggatgga
aatggcagtcgtaactccaaccctcaagcgtatgtcgtgcaaaggcgtgg
ggattcgccaccctcgcctggctttaactgtaacatggccaagttcgaga
gcaatattgctctcctctcccactctaaggtggactcaccctatatcgac
tcagaagccacgcaccacttcttccattcgtgtaaggctctcattcgcta
tgaacgcatcgacatcaagaatgctcaagccgcctctggagcagctcgac
tggttggaaagggtcacgtttggatacctttaaataagggtactgttgtt
gcagcttatcgcgccccagcgttccagtctaacatacgttcggttggcgt
gttaagtgctgacctcatggtggtgttcacctctaccatctgcccgtaca
acggatgtttcatcatggatccccatcggaatcaggagatcatttgggag
accaaaatatatcagggtctctacgttatggacctcagtgatagggacaa
acaggttatggttgtcaacgcaagcaaaagcaatcaggggcttgctttgg
aatggcatggtcgaactggtcacctgcctccgaataggtaccagaatctc
gccaaaacctttcaatccgtttcctgctttcaacgctccattcttgactc
gctgacatgcgttccttgtctcactggcaagatgaaacggaacccactag
tcgctcgatcgcgatccgtttcaacttccagtcctttggaactcattcat
gtagacatatctggaaagatttcgcaatctacgcaatggccattctggac
gaccatagttcgaagtcggacgtcttcctcctga
back to top