Ggra10061.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10061.t1
Unique NameGgra10061.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:71519..71863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10061Ggra10061Gracilaria gracilis GNS1m malegenetig00000862_pilon 71519..71863 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10061.t1.stop1Ggra10061.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 71519..71521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10061.t1.CDS1Ggra10061.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 71519..71863 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10061.t1.exon1Ggra10061.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 71519..71863 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10061.t1.start1Ggra10061.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 71861..71863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10061.t1Ggra10061.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 71519..71863 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10061.t1 ID=Ggra10061.t1|Name=Ggra10061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=115bp
MSSIATPSDRSSPPPVTVKTEAEVGDGNDSVEFVSEFLAVPRAPGFAEAA
APPSSVAKFHLSKAYPAGWQDPYRCVEETMNRHRPSGMGYRVLTRTLRTM
QRFLRALEARLLDS*
back to top

spliced messenger RNA

>Ggra10061.t1 ID=Ggra10061.t1|Name=Ggra10061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000862_pilon:71519..71863- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTATCGCCACCCCTTCCGACCGGTCCTCTCCGCCCCCAGTCAC
CGTGAAGACCGAAGCCGAAGTTGGAGATGGTAATGATTCAGTGGAGTTTG
TTTCGGAGTTCCTTGCCGTGCCGCGCGCCCCGGGCTTTGCTGAAGCCGCG
GCTCCGCCCTCCTCCGTCGCGAAGTTTCACCTATCAAAAGCCTATCCTGC
CGGTTGGCAAGACCCCTACAGGTGCGTGGAAGAGACCATGAACCGCCACC
GTCCGTCTGGAATGGGGTACCGCGTTTTGACCCGGACTCTCCGCACGATG
CAGCGCTTTCTGAGGGCCCTCGAGGCGCGCTTGTTAGATTCCTAG
back to top

protein sequence of Ggra10061.t1

>Ggra10061.t1 ID=Ggra10061.t1|Name=Ggra10061.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=115bp
MSSIATPSDRSSPPPVTVKTEAEVGDGNDSVEFVSEFLAVPRAPGFAEAA
APPSSVAKFHLSKAYPAGWQDPYRCVEETMNRHRPSGMGYRVLTRTLRTM
QRFLRALEARLLDS*
back to top

mRNA from alignment at tig00000862_pilon:71519..71863-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10061.t1 ID=Ggra10061.t1|Name=Ggra10061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000862_pilon:71519..71863- (Gracilaria gracilis GNS1m male)
ATGTCGTCTATCGCCACCCCTTCCGACCGGTCCTCTCCGCCCCCAGTCAC
CGTGAAGACCGAAGCCGAAGTTGGAGATGGTAATGATTCAGTGGAGTTTG
TTTCGGAGTTCCTTGCCGTGCCGCGCGCCCCGGGCTTTGCTGAAGCCGCG
GCTCCGCCCTCCTCCGTCGCGAAGTTTCACCTATCAAAAGCCTATCCTGC
CGGTTGGCAAGACCCCTACAGGTGCGTGGAAGAGACCATGAACCGCCACC
GTCCGTCTGGAATGGGGTACCGCGTTTTGACCCGGACTCTCCGCACGATG
CAGCGCTTTCTGAGGGCCCTCGAGGCGCGCTTGTTAGATTCCTAG
back to top

Coding sequence (CDS) from alignment at tig00000862_pilon:71519..71863-

>Ggra10061.t1 ID=Ggra10061.t1|Name=Ggra10061.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00000862_pilon:71519..71863- (Gracilaria gracilis GNS1m male)
ATGTCGTCTATCGCCACCCCTTCCGACCGGTCCTCTCCGCCCCCAGTCAC
CGTGAAGACCGAAGCCGAAGTTGGAGATGGTAATGATTCAGTGGAGTTTG
TTTCGGAGTTCCTTGCCGTGCCGCGCGCCCCGGGCTTTGCTGAAGCCGCG
GCTCCGCCCTCCTCCGTCGCGAAGTTTCACCTATCAAAAGCCTATCCTGC
CGGTTGGCAAGACCCCTACAGGTGCGTGGAAGAGACCATGAACCGCCACC
GTCCGTCTGGAATGGGGTACCGCGTTTTGACCCGGACTCTCCGCACGATG
CAGCGCTTTCTGAGGGCCCTCGAGGCGCGCTTGTTAGATTCCTAG
back to top