Ggra1004.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1004.t1
Unique Name	Ggra1004.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	485

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:139885..141339 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1004	Ggra1004	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 139885..141339 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1004.t1.start1	Ggra1004.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 139885..139887 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1004.t1.CDS1	Ggra1004.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 139885..141339 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1004.t1.exon1	Ggra1004.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 139885..141339 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1004.t1.stop1	Ggra1004.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 141337..141339 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1004.t1	Ggra1004.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 139885..141339 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:139885..141339+
coding sequence from alignment at tig00000027_pilon:139885..141339+

mRNA sequence

>Ggra1004.t1 ID=Ggra1004.t1|Name=Ggra1004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=485bp
MDKSNRSSWKSTRPNRPLVISEVDANINPQTPKSENLASEVEEGENDAKT
TRFEQDRETFDGQNEMGVEIITPLEEKQTFTIDTPSSSGAKSLSCNGETE
QNVLHVVNSPLTPDQHDMREDVGVRNRSRFKSDQTSHPSNGDDVSRCQRG
LEFNEQSRTVDARCSNPFRSLKSEISQVDRAEQHSAEMRRFHEVIDLTKP
EEDEVGSNRSVSKNRNLCTKGSSPDMPNVRALEASDHGDLNEYNEISIEN
LELFDIPHEYVKGVLDEPIHGDGISNKRGPGQEAGEIESGNEANGKGVRT
PGNKEDSTMMSKRRRLNSSEVRYFVGKQVVFQDFGGTIREGVIEKQEHKR
IFTIMFEDRSHSELVLESEKFFVFGKAVNRFIRNGLLTRDDIDTQSISCV
RSSLNPIDEESMVKVSGSQHLVKVIEKDDFVFVSGAPKSRFLAGRVVFVE
IGPCSFVKLLHKNQGKWLASNSIRQPCEDVIELD*

spliced messenger RNA

>Ggra1004.t1 ID=Ggra1004.t1|Name=Ggra1004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000027_pilon:139885..141339+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAATCCAATCGTTCCTCGTGGAAATCAACAAGACCAAACAGACC
GCTGGTGATCTCAGAGGTCGATGCGAATATTAATCCACAAACACCAAAAT
CAGAAAACCTGGCATCTGAAGTGGAAGAAGGTGAAAACGATGCTAAAACC
ACGAGATTTGAACAAGATAGAGAAACTTTCGACGGTCAGAACGAGATGGG
AGTCGAGATAATTACGCCGTTAGAAGAAAAGCAAACGTTCACGATTGACA
CCCCTTCGAGTTCCGGTGCGAAATCATTATCTTGCAATGGTGAAACTGAG
CAGAACGTTTTGCACGTCGTAAATTCGCCACTCACTCCAGATCAACATGA
TATGAGAGAAGATGTTGGGGTCAGGAACCGGAGTAGGTTTAAATCTGATC
AAACTTCCCACCCAAGCAATGGAGACGACGTTTCGCGATGCCAACGCGGA
TTAGAATTCAATGAGCAATCAAGGACAGTGGATGCAAGATGTTCGAATCC
GTTTCGTTCGTTGAAGAGCGAAATATCTCAAGTCGATCGGGCAGAGCAGC
ATTCCGCTGAAATGCGACGCTTTCATGAAGTTATTGATCTTACAAAGCCT
GAGGAGGACGAAGTCGGGAGCAACAGGTCGGTTTCAAAGAACAGAAATTT
ATGTACCAAGGGATCTTCTCCAGATATGCCGAATGTGAGAGCCCTAGAAG
CTAGTGACCATGGTGATTTGAACGAATACAACGAGATCAGCATCGAGAAT
TTGGAGTTATTCGACATTCCGCATGAGTACGTTAAAGGAGTACTAGACGA
ACCCATTCACGGTGACGGGATTTCAAACAAGAGGGGACCTGGGCAAGAGG
CAGGCGAAATAGAAAGTGGGAACGAGGCAAATGGGAAAGGGGTTAGGACT
CCAGGAAACAAAGAGGATTCAACTATGATGTCAAAAAGAAGACGTTTGAA
TTCGTCCGAAGTCCGGTATTTTGTCGGAAAGCAAGTGGTATTTCAAGACT
TTGGGGGAACCATCCGGGAGGGCGTCATTGAGAAGCAAGAACACAAGCGA
ATTTTTACCATCATGTTCGAGGATAGATCGCATTCAGAGTTAGTTCTCGA
GTCAGAGAAGTTCTTCGTGTTTGGAAAGGCTGTGAATCGATTTATTCGGA
ACGGACTGTTGACAAGAGATGACATAGATACACAATCTATTTCTTGTGTA
CGCAGTAGTTTGAATCCAATTGATGAAGAGTCAATGGTGAAGGTTTCTGG
GTCTCAGCATCTAGTTAAGGTCATTGAGAAAGATGATTTTGTTTTTGTCA
GCGGCGCGCCGAAGAGTAGATTTCTGGCAGGGAGAGTAGTCTTTGTCGAG
ATTGGGCCGTGCTCCTTTGTGAAATTGTTACACAAAAACCAAGGAAAGTG
GTTGGCTTCTAATTCAATTCGTCAGCCTTGTGAGGATGTCATCGAGTTGG
ATTGA

protein sequence of Ggra1004.t1

>Ggra1004.t1 ID=Ggra1004.t1|Name=Ggra1004.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=485bp
MDKSNRSSWKSTRPNRPLVISEVDANINPQTPKSENLASEVEEGENDAKT
TRFEQDRETFDGQNEMGVEIITPLEEKQTFTIDTPSSSGAKSLSCNGETE
QNVLHVVNSPLTPDQHDMREDVGVRNRSRFKSDQTSHPSNGDDVSRCQRG
LEFNEQSRTVDARCSNPFRSLKSEISQVDRAEQHSAEMRRFHEVIDLTKP
EEDEVGSNRSVSKNRNLCTKGSSPDMPNVRALEASDHGDLNEYNEISIEN
LELFDIPHEYVKGVLDEPIHGDGISNKRGPGQEAGEIESGNEANGKGVRT
PGNKEDSTMMSKRRRLNSSEVRYFVGKQVVFQDFGGTIREGVIEKQEHKR
IFTIMFEDRSHSELVLESEKFFVFGKAVNRFIRNGLLTRDDIDTQSISCV
RSSLNPIDEESMVKVSGSQHLVKVIEKDDFVFVSGAPKSRFLAGRVVFVE
IGPCSFVKLLHKNQGKWLASNSIRQPCEDVIELD*

mRNA from alignment at tig00000027_pilon:139885..141339+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1004.t1 ID=Ggra1004.t1|Name=Ggra1004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000027_pilon:139885..141339+ (Gracilaria gracilis GNS1m male)
ATGGACAAATCCAATCGTTCCTCGTGGAAATCAACAAGACCAAACAGACC
GCTGGTGATCTCAGAGGTCGATGCGAATATTAATCCACAAACACCAAAAT
CAGAAAACCTGGCATCTGAAGTGGAAGAAGGTGAAAACGATGCTAAAACC
ACGAGATTTGAACAAGATAGAGAAACTTTCGACGGTCAGAACGAGATGGG
AGTCGAGATAATTACGCCGTTAGAAGAAAAGCAAACGTTCACGATTGACA
CCCCTTCGAGTTCCGGTGCGAAATCATTATCTTGCAATGGTGAAACTGAG
CAGAACGTTTTGCACGTCGTAAATTCGCCACTCACTCCAGATCAACATGA
TATGAGAGAAGATGTTGGGGTCAGGAACCGGAGTAGGTTTAAATCTGATC
AAACTTCCCACCCAAGCAATGGAGACGACGTTTCGCGATGCCAACGCGGA
TTAGAATTCAATGAGCAATCAAGGACAGTGGATGCAAGATGTTCGAATCC
GTTTCGTTCGTTGAAGAGCGAAATATCTCAAGTCGATCGGGCAGAGCAGC
ATTCCGCTGAAATGCGACGCTTTCATGAAGTTATTGATCTTACAAAGCCT
GAGGAGGACGAAGTCGGGAGCAACAGGTCGGTTTCAAAGAACAGAAATTT
ATGTACCAAGGGATCTTCTCCAGATATGCCGAATGTGAGAGCCCTAGAAG
CTAGTGACCATGGTGATTTGAACGAATACAACGAGATCAGCATCGAGAAT
TTGGAGTTATTCGACATTCCGCATGAGTACGTTAAAGGAGTACTAGACGA
ACCCATTCACGGTGACGGGATTTCAAACAAGAGGGGACCTGGGCAAGAGG
CAGGCGAAATAGAAAGTGGGAACGAGGCAAATGGGAAAGGGGTTAGGACT
CCAGGAAACAAAGAGGATTCAACTATGATGTCAAAAAGAAGACGTTTGAA
TTCGTCCGAAGTCCGGTATTTTGTCGGAAAGCAAGTGGTATTTCAAGACT
TTGGGGGAACCATCCGGGAGGGCGTCATTGAGAAGCAAGAACACAAGCGA
ATTTTTACCATCATGTTCGAGGATAGATCGCATTCAGAGTTAGTTCTCGA
GTCAGAGAAGTTCTTCGTGTTTGGAAAGGCTGTGAATCGATTTATTCGGA
ACGGACTGTTGACAAGAGATGACATAGATACACAATCTATTTCTTGTGTA
CGCAGTAGTTTGAATCCAATTGATGAAGAGTCAATGGTGAAGGTTTCTGG
GTCTCAGCATCTAGTTAAGGTCATTGAGAAAGATGATTTTGTTTTTGTCA
GCGGCGCGCCGAAGAGTAGATTTCTGGCAGGGAGAGTAGTCTTTGTCGAG
ATTGGGCCGTGCTCCTTTGTGAAATTGTTACACAAAAACCAAGGAAAGTG
GTTGGCTTCTAATTCAATTCGTCAGCCTTGTGAGGATGTCATCGAGTTGG
ATTGA

Coding sequence (CDS) from alignment at tig00000027_pilon:139885..141339+

>Ggra1004.t1 ID=Ggra1004.t1|Name=Ggra1004.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1455bp|location=Sequence derived from alignment at tig00000027_pilon:139885..141339+ (Gracilaria gracilis GNS1m male)
ATGGACAAATCCAATCGTTCCTCGTGGAAATCAACAAGACCAAACAGACC
GCTGGTGATCTCAGAGGTCGATGCGAATATTAATCCACAAACACCAAAAT
CAGAAAACCTGGCATCTGAAGTGGAAGAAGGTGAAAACGATGCTAAAACC
ACGAGATTTGAACAAGATAGAGAAACTTTCGACGGTCAGAACGAGATGGG
AGTCGAGATAATTACGCCGTTAGAAGAAAAGCAAACGTTCACGATTGACA
CCCCTTCGAGTTCCGGTGCGAAATCATTATCTTGCAATGGTGAAACTGAG
CAGAACGTTTTGCACGTCGTAAATTCGCCACTCACTCCAGATCAACATGA
TATGAGAGAAGATGTTGGGGTCAGGAACCGGAGTAGGTTTAAATCTGATC
AAACTTCCCACCCAAGCAATGGAGACGACGTTTCGCGATGCCAACGCGGA
TTAGAATTCAATGAGCAATCAAGGACAGTGGATGCAAGATGTTCGAATCC
GTTTCGTTCGTTGAAGAGCGAAATATCTCAAGTCGATCGGGCAGAGCAGC
ATTCCGCTGAAATGCGACGCTTTCATGAAGTTATTGATCTTACAAAGCCT
GAGGAGGACGAAGTCGGGAGCAACAGGTCGGTTTCAAAGAACAGAAATTT
ATGTACCAAGGGATCTTCTCCAGATATGCCGAATGTGAGAGCCCTAGAAG
CTAGTGACCATGGTGATTTGAACGAATACAACGAGATCAGCATCGAGAAT
TTGGAGTTATTCGACATTCCGCATGAGTACGTTAAAGGAGTACTAGACGA
ACCCATTCACGGTGACGGGATTTCAAACAAGAGGGGACCTGGGCAAGAGG
CAGGCGAAATAGAAAGTGGGAACGAGGCAAATGGGAAAGGGGTTAGGACT
CCAGGAAACAAAGAGGATTCAACTATGATGTCAAAAAGAAGACGTTTGAA
TTCGTCCGAAGTCCGGTATTTTGTCGGAAAGCAAGTGGTATTTCAAGACT
TTGGGGGAACCATCCGGGAGGGCGTCATTGAGAAGCAAGAACACAAGCGA
ATTTTTACCATCATGTTCGAGGATAGATCGCATTCAGAGTTAGTTCTCGA
GTCAGAGAAGTTCTTCGTGTTTGGAAAGGCTGTGAATCGATTTATTCGGA
ACGGACTGTTGACAAGAGATGACATAGATACACAATCTATTTCTTGTGTA
CGCAGTAGTTTGAATCCAATTGATGAAGAGTCAATGGTGAAGGTTTCTGG
GTCTCAGCATCTAGTTAAGGTCATTGAGAAAGATGATTTTGTTTTTGTCA
GCGGCGCGCCGAAGAGTAGATTTCTGGCAGGGAGAGTAGTCTTTGTCGAG
ATTGGGCCGTGCTCCTTTGTGAAATTGTTACACAAAAACCAAGGAAAGTG
GTTGGCTTCTAATTCAATTCGTCAGCCTTGTGAGGATGTCATCGAGTTGG
ATTGA