Ggra10022.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10022.t1
Unique NameGgra10022.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:82185..82991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708574.1
PFAMsAsparaginase_2
Max annot lvl2759|Eukaryota
KEGG koko:K01444
KEGG Pathwayko00511,ko04142,map00511,map04142
Evalue1.99e-59
EggNOG OGsCOG1446@1|root,KOG1593@2759|Eukaryota
EC3.5.1.26
DescriptionN4-(beta-N-acetylglucosaminyl)-L-asparaginase activity
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10022Ggra10022Gracilaria gracilis GNS1m malegenetig00000222_pilon 82185..82991 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10022.t1.start1Ggra10022.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 82185..82187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10022.t1.CDS1Ggra10022.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 82185..82991 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10022.t1.exon1Ggra10022.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 82185..82991 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10022.t1.stop1Ggra10022.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 82989..82991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10022.t1Ggra10022.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 82185..82991 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10022.t1 ID=Ggra10022.t1|Name=Ggra10022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=269bp
MAVETGIKVVELDESVTSAGYGGLPNAAGILQLDAAMMTSAGRVGSVMAL
TGFRSAIDIAHTVLRHSNHPILAGEGAALFAEQHGFRARSDTLSPHAQKR
YQEFAASANPVPESHNNGGMVHSDTVGMIARDRSGAITVGCATSGMQFKS
VGRVGDSPIIGAGLYASESGAAVASGDGDKMIRFCLAFLTVERMSTGCSA
TEASRYAIGRVRQTDPSCQAAIVSMSADGAYGAACTHDGFGAVGWREGMS
QTEIIEVKGDISVSWKHT*
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spliced messenger RNA

>Ggra10022.t1 ID=Ggra10022.t1|Name=Ggra10022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000222_pilon:82185..82991+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTCGAAACTGGCATAAAAGTGGTCGAGCTTGACGAAAGCGTAAC
TTCGGCTGGGTATGGTGGTCTTCCGAATGCCGCAGGTATTTTGCAACTTG
ACGCAGCCATGATGACCTCCGCTGGCAGAGTTGGGTCTGTCATGGCACTC
ACAGGCTTCCGTTCCGCGATCGATATTGCACACACGGTGCTCCGCCATTC
GAATCACCCTATTCTGGCAGGAGAAGGTGCAGCGCTGTTCGCCGAACAGC
ATGGATTTCGTGCTAGAAGTGATACCCTCTCACCCCATGCTCAGAAGCGC
TATCAAGAGTTTGCGGCGAGCGCAAATCCCGTACCAGAGTCTCACAACAA
CGGTGGAATGGTACATTCCGACACTGTGGGTATGATTGCTCGGGACAGAT
CAGGTGCGATAACTGTTGGTTGTGCTACGAGCGGAATGCAGTTCAAATCA
GTCGGTAGAGTCGGTGATAGCCCAATCATTGGTGCCGGCCTCTACGCATC
TGAAAGTGGAGCGGCAGTGGCATCGGGGGATGGTGACAAGATGATACGAT
TCTGCTTGGCTTTTCTCACAGTTGAACGGATGAGCACTGGTTGTTCGGCG
ACCGAGGCTTCTCGATATGCGATCGGACGCGTACGGCAAACGGATCCTAG
TTGCCAAGCGGCCATCGTTTCAATGTCTGCAGACGGTGCGTACGGCGCGG
CGTGCACACATGACGGTTTTGGCGCGGTTGGATGGCGCGAAGGTATGAGC
CAAACCGAGATCATAGAGGTAAAAGGAGATATCTCTGTATCCTGGAAACA
TACTTGA
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protein sequence of Ggra10022.t1

>Ggra10022.t1 ID=Ggra10022.t1|Name=Ggra10022.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MAVETGIKVVELDESVTSAGYGGLPNAAGILQLDAAMMTSAGRVGSVMAL
TGFRSAIDIAHTVLRHSNHPILAGEGAALFAEQHGFRARSDTLSPHAQKR
YQEFAASANPVPESHNNGGMVHSDTVGMIARDRSGAITVGCATSGMQFKS
VGRVGDSPIIGAGLYASESGAAVASGDGDKMIRFCLAFLTVERMSTGCSA
TEASRYAIGRVRQTDPSCQAAIVSMSADGAYGAACTHDGFGAVGWREGMS
QTEIIEVKGDISVSWKHT*
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mRNA from alignment at tig00000222_pilon:82185..82991+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10022.t1 ID=Ggra10022.t1|Name=Ggra10022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000222_pilon:82185..82991+ (Gracilaria gracilis GNS1m male)
ATGGCGGTCGAAACTGGCATAAAAGTGGTCGAGCTTGACGAAAGCGTAAC
TTCGGCTGGGTATGGTGGTCTTCCGAATGCCGCAGGTATTTTGCAACTTG
ACGCAGCCATGATGACCTCCGCTGGCAGAGTTGGGTCTGTCATGGCACTC
ACAGGCTTCCGTTCCGCGATCGATATTGCACACACGGTGCTCCGCCATTC
GAATCACCCTATTCTGGCAGGAGAAGGTGCAGCGCTGTTCGCCGAACAGC
ATGGATTTCGTGCTAGAAGTGATACCCTCTCACCCCATGCTCAGAAGCGC
TATCAAGAGTTTGCGGCGAGCGCAAATCCCGTACCAGAGTCTCACAACAA
CGGTGGAATGGTACATTCCGACACTGTGGGTATGATTGCTCGGGACAGAT
CAGGTGCGATAACTGTTGGTTGTGCTACGAGCGGAATGCAGTTCAAATCA
GTCGGTAGAGTCGGTGATAGCCCAATCATTGGTGCCGGCCTCTACGCATC
TGAAAGTGGAGCGGCAGTGGCATCGGGGGATGGTGACAAGATGATACGAT
TCTGCTTGGCTTTTCTCACAGTTGAACGGATGAGCACTGGTTGTTCGGCG
ACCGAGGCTTCTCGATATGCGATCGGACGCGTACGGCAAACGGATCCTAG
TTGCCAAGCGGCCATCGTTTCAATGTCTGCAGACGGTGCGTACGGCGCGG
CGTGCACACATGACGGTTTTGGCGCGGTTGGATGGCGCGAAGGTATGAGC
CAAACCGAGATCATAGAGGTAAAAGGAGATATCTCTGTATCCTGGAAACA
TACTTGA
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Coding sequence (CDS) from alignment at tig00000222_pilon:82185..82991+

>Ggra10022.t1 ID=Ggra10022.t1|Name=Ggra10022.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000222_pilon:82185..82991+ (Gracilaria gracilis GNS1m male)
ATGGCGGTCGAAACTGGCATAAAAGTGGTCGAGCTTGACGAAAGCGTAAC
TTCGGCTGGGTATGGTGGTCTTCCGAATGCCGCAGGTATTTTGCAACTTG
ACGCAGCCATGATGACCTCCGCTGGCAGAGTTGGGTCTGTCATGGCACTC
ACAGGCTTCCGTTCCGCGATCGATATTGCACACACGGTGCTCCGCCATTC
GAATCACCCTATTCTGGCAGGAGAAGGTGCAGCGCTGTTCGCCGAACAGC
ATGGATTTCGTGCTAGAAGTGATACCCTCTCACCCCATGCTCAGAAGCGC
TATCAAGAGTTTGCGGCGAGCGCAAATCCCGTACCAGAGTCTCACAACAA
CGGTGGAATGGTACATTCCGACACTGTGGGTATGATTGCTCGGGACAGAT
CAGGTGCGATAACTGTTGGTTGTGCTACGAGCGGAATGCAGTTCAAATCA
GTCGGTAGAGTCGGTGATAGCCCAATCATTGGTGCCGGCCTCTACGCATC
TGAAAGTGGAGCGGCAGTGGCATCGGGGGATGGTGACAAGATGATACGAT
TCTGCTTGGCTTTTCTCACAGTTGAACGGATGAGCACTGGTTGTTCGGCG
ACCGAGGCTTCTCGATATGCGATCGGACGCGTACGGCAAACGGATCCTAG
TTGCCAAGCGGCCATCGTTTCAATGTCTGCAGACGGTGCGTACGGCGCGG
CGTGCACACATGACGGTTTTGGCGCGGTTGGATGGCGCGAAGGTATGAGC
CAAACCGAGATCATAGAGGTAAAAGGAGATATCTCTGTATCCTGGAAACA
TACTTGA
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