Ggra10020.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10020.t1
Unique Name	Ggra10020.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	579

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000222_pilon	contig	tig00000222_pilon:78527..80263 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008613356.1
PFAMs	DNA_photolyase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01669
Evalue	3.92e-130
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota
EC	4.1.99.3
Description	DNA photolyase activity
COG category	L
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10020	Ggra10020	Gracilaria gracilis GNS1m male	gene	tig00000222_pilon 78527..80263 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10020.t1.start1	Ggra10020.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000222_pilon 78527..78529 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10020.t1.CDS1	Ggra10020.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000222_pilon 78527..80263 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10020.t1.exon1	Ggra10020.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000222_pilon 78527..80263 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10020.t1.stop1	Ggra10020.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000222_pilon 80261..80263 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10020.t1	Ggra10020.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000222_pilon 78527..80263 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000222_pilon:78527..80263+
coding sequence from alignment at tig00000222_pilon:78527..80263+

mRNA sequence

>Ggra10020.t1 ID=Ggra10020.t1|Name=Ggra10020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp
MIRAFVSPFIPALRPLLVSHKHLESRANRFSAASGARVFMAASTSPADAS
RVHTLNSKGANKSGTFVLYWMSNSLRTRYNFALGHAIYLCEKYRKPLRVV
HVFDTIAQDGQPLPERHAAFQLESLSDVEQDLRQKSIPFAVIEPGHGTCE
TIAALAKDAVLVVTDTSYLRLGRADREAVASSLDVALYSVEADVIVPVQT
ASNKAEYAARTIRPKITRALKDYLIPMEDIELTQSSGCDVKSWIKTTNPD
MHLVDLNDMDAVLENMEGLDRGAPRVRLFRGGQNEAQSRLDSFLKKRLKE
YGSGRNEPAKQLQSDLSPFLRAGNISPIDIALRTKESARKKSSMKESEES
FLEELIVRRELAVNACWFNPKVYDMYENIVPNFAKVSLALHKSDKRPKIH
SYEELEAALTADPYWNAAQLEMIARGKMHGYMRMYWVKRIIGWVEDPKDA
MDYALRLNNRWELDAVDPNSYTGVIWCFGLHDRGWTERPIWGKVRYMNDS
GLKRKFNMAAYIASVDKLVAKEGLPFHIAELRQQHGKGKRQQTIEETRKR
RSTSKTPPGRSKPTKRLKGTAVTQGLKA*

spliced messenger RNA

>Ggra10020.t1 ID=Ggra10020.t1|Name=Ggra10020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000222_pilon:78527..80263+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAGAGCCTTCGTCAGTCCGTTCATTCCTGCTCTTCGTCCGCTTCT
CGTCAGTCACAAACATCTGGAATCGAGGGCGAATCGATTTTCTGCCGCAA
GCGGTGCACGAGTCTTCATGGCGGCGTCTACCTCTCCAGCCGATGCTTCC
CGAGTTCATACCCTCAACTCCAAAGGCGCCAACAAATCCGGTACTTTTGT
ACTGTACTGGATGTCCAATTCATTACGTACTAGGTACAACTTTGCGCTAG
GACATGCGATATATCTGTGCGAGAAATATCGCAAACCGCTGAGAGTCGTC
CATGTGTTTGACACCATCGCACAGGATGGACAACCGCTTCCGGAGCGTCA
TGCGGCGTTCCAGCTCGAAAGCTTGTCGGATGTTGAGCAGGACTTGCGAC
AAAAATCTATCCCGTTTGCTGTAATAGAGCCTGGGCATGGTACGTGTGAG
ACGATTGCTGCTTTGGCTAAGGACGCAGTGTTGGTGGTTACAGACACTTC
TTATTTGCGCCTGGGTAGAGCTGACCGAGAGGCGGTCGCATCTTCCTTAG
ATGTTGCTCTCTATTCGGTCGAAGCCGATGTCATCGTTCCTGTTCAGACA
GCATCAAACAAGGCGGAATATGCAGCGCGAACAATTCGTCCGAAAATAAC
TCGTGCTCTGAAGGACTATTTGATTCCTATGGAAGACATCGAACTAACTC
AGTCATCTGGATGTGACGTGAAAAGTTGGATAAAGACAACGAACCCGGAT
ATGCATTTAGTTGATTTGAATGACATGGACGCTGTGCTAGAGAATATGGA
AGGCCTGGATCGTGGAGCTCCTCGAGTACGACTTTTCCGTGGTGGGCAAA
ATGAGGCCCAATCCCGTCTTGATTCTTTTCTCAAAAAGAGGTTGAAGGAG
TACGGTTCAGGGCGAAATGAACCTGCCAAACAATTACAATCTGATCTCAG
TCCTTTCCTTCGAGCAGGAAACATATCACCCATTGATATTGCGTTACGGA
CAAAAGAAAGTGCTCGAAAGAAGTCTTCTATGAAGGAAAGTGAGGAGTCG
TTCTTGGAGGAGCTTATCGTGCGTCGTGAATTAGCGGTGAATGCTTGCTG
GTTCAATCCGAAGGTCTACGATATGTATGAAAACATTGTGCCTAACTTTG
CCAAAGTGTCCCTCGCTTTGCACAAAAGCGACAAGAGACCGAAGATTCAC
AGTTACGAGGAACTGGAAGCAGCTCTCACAGCAGACCCTTACTGGAATGC
GGCGCAGCTGGAGATGATTGCAAGAGGGAAAATGCACGGGTACATGAGAA
TGTACTGGGTGAAGCGCATTATTGGATGGGTGGAAGACCCAAAGGATGCC
ATGGACTACGCCCTACGACTGAACAATAGATGGGAGCTGGATGCAGTGGA
TCCTAACTCGTACACTGGAGTTATTTGGTGTTTTGGACTTCATGATCGTG
GCTGGACCGAAAGACCGATATGGGGTAAGGTGCGATATATGAACGACAGT
GGCTTGAAAAGAAAGTTTAACATGGCCGCTTACATTGCCAGTGTGGACAA
GTTGGTCGCCAAAGAAGGGCTGCCTTTTCACATTGCCGAACTTCGGCAAC
AGCATGGAAAAGGAAAAAGACAGCAGACGATTGAAGAAACTCGTAAAAGA
CGCAGTACCAGCAAAACGCCCCCCGGGCGTTCAAAACCTACAAAGCGTTT
GAAAGGAACAGCTGTTACCCAAGGATTAAAGGCATGA

protein sequence of Ggra10020.t1

>Ggra10020.t1 ID=Ggra10020.t1|Name=Ggra10020.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=579bp
MIRAFVSPFIPALRPLLVSHKHLESRANRFSAASGARVFMAASTSPADAS
RVHTLNSKGANKSGTFVLYWMSNSLRTRYNFALGHAIYLCEKYRKPLRVV
HVFDTIAQDGQPLPERHAAFQLESLSDVEQDLRQKSIPFAVIEPGHGTCE
TIAALAKDAVLVVTDTSYLRLGRADREAVASSLDVALYSVEADVIVPVQT
ASNKAEYAARTIRPKITRALKDYLIPMEDIELTQSSGCDVKSWIKTTNPD
MHLVDLNDMDAVLENMEGLDRGAPRVRLFRGGQNEAQSRLDSFLKKRLKE
YGSGRNEPAKQLQSDLSPFLRAGNISPIDIALRTKESARKKSSMKESEES
FLEELIVRRELAVNACWFNPKVYDMYENIVPNFAKVSLALHKSDKRPKIH
SYEELEAALTADPYWNAAQLEMIARGKMHGYMRMYWVKRIIGWVEDPKDA
MDYALRLNNRWELDAVDPNSYTGVIWCFGLHDRGWTERPIWGKVRYMNDS
GLKRKFNMAAYIASVDKLVAKEGLPFHIAELRQQHGKGKRQQTIEETRKR
RSTSKTPPGRSKPTKRLKGTAVTQGLKA*

mRNA from alignment at tig00000222_pilon:78527..80263+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10020.t1 ID=Ggra10020.t1|Name=Ggra10020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000222_pilon:78527..80263+ (Gracilaria gracilis GNS1m male)
ATGATAAGAGCCTTCGTCAGTCCGTTCATTCCTGCTCTTCGTCCGCTTCT
CGTCAGTCACAAACATCTGGAATCGAGGGCGAATCGATTTTCTGCCGCAA
GCGGTGCACGAGTCTTCATGGCGGCGTCTACCTCTCCAGCCGATGCTTCC
CGAGTTCATACCCTCAACTCCAAAGGCGCCAACAAATCCGGTACTTTTGT
ACTGTACTGGATGTCCAATTCATTACGTACTAGGTACAACTTTGCGCTAG
GACATGCGATATATCTGTGCGAGAAATATCGCAAACCGCTGAGAGTCGTC
CATGTGTTTGACACCATCGCACAGGATGGACAACCGCTTCCGGAGCGTCA
TGCGGCGTTCCAGCTCGAAAGCTTGTCGGATGTTGAGCAGGACTTGCGAC
AAAAATCTATCCCGTTTGCTGTAATAGAGCCTGGGCATGGTACGTGTGAG
ACGATTGCTGCTTTGGCTAAGGACGCAGTGTTGGTGGTTACAGACACTTC
TTATTTGCGCCTGGGTAGAGCTGACCGAGAGGCGGTCGCATCTTCCTTAG
ATGTTGCTCTCTATTCGGTCGAAGCCGATGTCATCGTTCCTGTTCAGACA
GCATCAAACAAGGCGGAATATGCAGCGCGAACAATTCGTCCGAAAATAAC
TCGTGCTCTGAAGGACTATTTGATTCCTATGGAAGACATCGAACTAACTC
AGTCATCTGGATGTGACGTGAAAAGTTGGATAAAGACAACGAACCCGGAT
ATGCATTTAGTTGATTTGAATGACATGGACGCTGTGCTAGAGAATATGGA
AGGCCTGGATCGTGGAGCTCCTCGAGTACGACTTTTCCGTGGTGGGCAAA
ATGAGGCCCAATCCCGTCTTGATTCTTTTCTCAAAAAGAGGTTGAAGGAG
TACGGTTCAGGGCGAAATGAACCTGCCAAACAATTACAATCTGATCTCAG
TCCTTTCCTTCGAGCAGGAAACATATCACCCATTGATATTGCGTTACGGA
CAAAAGAAAGTGCTCGAAAGAAGTCTTCTATGAAGGAAAGTGAGGAGTCG
TTCTTGGAGGAGCTTATCGTGCGTCGTGAATTAGCGGTGAATGCTTGCTG
GTTCAATCCGAAGGTCTACGATATGTATGAAAACATTGTGCCTAACTTTG
CCAAAGTGTCCCTCGCTTTGCACAAAAGCGACAAGAGACCGAAGATTCAC
AGTTACGAGGAACTGGAAGCAGCTCTCACAGCAGACCCTTACTGGAATGC
GGCGCAGCTGGAGATGATTGCAAGAGGGAAAATGCACGGGTACATGAGAA
TGTACTGGGTGAAGCGCATTATTGGATGGGTGGAAGACCCAAAGGATGCC
ATGGACTACGCCCTACGACTGAACAATAGATGGGAGCTGGATGCAGTGGA
TCCTAACTCGTACACTGGAGTTATTTGGTGTTTTGGACTTCATGATCGTG
GCTGGACCGAAAGACCGATATGGGGTAAGGTGCGATATATGAACGACAGT
GGCTTGAAAAGAAAGTTTAACATGGCCGCTTACATTGCCAGTGTGGACAA
GTTGGTCGCCAAAGAAGGGCTGCCTTTTCACATTGCCGAACTTCGGCAAC
AGCATGGAAAAGGAAAAAGACAGCAGACGATTGAAGAAACTCGTAAAAGA
CGCAGTACCAGCAAAACGCCCCCCGGGCGTTCAAAACCTACAAAGCGTTT
GAAAGGAACAGCTGTTACCCAAGGATTAAAGGCATGA

Coding sequence (CDS) from alignment at tig00000222_pilon:78527..80263+

>Ggra10020.t1 ID=Ggra10020.t1|Name=Ggra10020.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1737bp|location=Sequence derived from alignment at tig00000222_pilon:78527..80263+ (Gracilaria gracilis GNS1m male)
ATGATAAGAGCCTTCGTCAGTCCGTTCATTCCTGCTCTTCGTCCGCTTCT
CGTCAGTCACAAACATCTGGAATCGAGGGCGAATCGATTTTCTGCCGCAA
GCGGTGCACGAGTCTTCATGGCGGCGTCTACCTCTCCAGCCGATGCTTCC
CGAGTTCATACCCTCAACTCCAAAGGCGCCAACAAATCCGGTACTTTTGT
ACTGTACTGGATGTCCAATTCATTACGTACTAGGTACAACTTTGCGCTAG
GACATGCGATATATCTGTGCGAGAAATATCGCAAACCGCTGAGAGTCGTC
CATGTGTTTGACACCATCGCACAGGATGGACAACCGCTTCCGGAGCGTCA
TGCGGCGTTCCAGCTCGAAAGCTTGTCGGATGTTGAGCAGGACTTGCGAC
AAAAATCTATCCCGTTTGCTGTAATAGAGCCTGGGCATGGTACGTGTGAG
ACGATTGCTGCTTTGGCTAAGGACGCAGTGTTGGTGGTTACAGACACTTC
TTATTTGCGCCTGGGTAGAGCTGACCGAGAGGCGGTCGCATCTTCCTTAG
ATGTTGCTCTCTATTCGGTCGAAGCCGATGTCATCGTTCCTGTTCAGACA
GCATCAAACAAGGCGGAATATGCAGCGCGAACAATTCGTCCGAAAATAAC
TCGTGCTCTGAAGGACTATTTGATTCCTATGGAAGACATCGAACTAACTC
AGTCATCTGGATGTGACGTGAAAAGTTGGATAAAGACAACGAACCCGGAT
ATGCATTTAGTTGATTTGAATGACATGGACGCTGTGCTAGAGAATATGGA
AGGCCTGGATCGTGGAGCTCCTCGAGTACGACTTTTCCGTGGTGGGCAAA
ATGAGGCCCAATCCCGTCTTGATTCTTTTCTCAAAAAGAGGTTGAAGGAG
TACGGTTCAGGGCGAAATGAACCTGCCAAACAATTACAATCTGATCTCAG
TCCTTTCCTTCGAGCAGGAAACATATCACCCATTGATATTGCGTTACGGA
CAAAAGAAAGTGCTCGAAAGAAGTCTTCTATGAAGGAAAGTGAGGAGTCG
TTCTTGGAGGAGCTTATCGTGCGTCGTGAATTAGCGGTGAATGCTTGCTG
GTTCAATCCGAAGGTCTACGATATGTATGAAAACATTGTGCCTAACTTTG
CCAAAGTGTCCCTCGCTTTGCACAAAAGCGACAAGAGACCGAAGATTCAC
AGTTACGAGGAACTGGAAGCAGCTCTCACAGCAGACCCTTACTGGAATGC
GGCGCAGCTGGAGATGATTGCAAGAGGGAAAATGCACGGGTACATGAGAA
TGTACTGGGTGAAGCGCATTATTGGATGGGTGGAAGACCCAAAGGATGCC
ATGGACTACGCCCTACGACTGAACAATAGATGGGAGCTGGATGCAGTGGA
TCCTAACTCGTACACTGGAGTTATTTGGTGTTTTGGACTTCATGATCGTG
GCTGGACCGAAAGACCGATATGGGGTAAGGTGCGATATATGAACGACAGT
GGCTTGAAAAGAAAGTTTAACATGGCCGCTTACATTGCCAGTGTGGACAA
GTTGGTCGCCAAAGAAGGGCTGCCTTTTCACATTGCCGAACTTCGGCAAC
AGCATGGAAAAGGAAAAAGACAGCAGACGATTGAAGAAACTCGTAAAAGA
CGCAGTACCAGCAAAACGCCCCCCGGGCGTTCAAAACCTACAAAGCGTTT
GAAAGGAACAGCTGTTACCCAAGGATTAAAGGCATGA