Ggra10019.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10019.t1
Unique NameGgra10019.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:77290..78198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog535289.Dtpsy_2646
PFAMs2OG-FeII_Oxy_3
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Evalue6.4e-08
EggNOG OGsCOG3751@1|root,COG3751@2|Bacteria,1NG7K@1224|Proteobacteria,2VK5Y@28216|Betaproteobacteria,4AAXY@80864|Comamonadaceae
EC1.14.11.2
DescriptionSMART Prolyl 4-hydroxylase, alpha subunit
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10019Ggra10019Gracilaria gracilis GNS1m malegenetig00000222_pilon 77290..78198 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10019.t1.stop1Ggra10019.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 77290..77292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10019.t1.CDS1Ggra10019.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 77290..78198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10019.t1.exon1Ggra10019.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 77290..78198 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10019.t1.start1Ggra10019.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 78196..78198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10019.t1Ggra10019.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 77290..78198 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10019.t1 ID=Ggra10019.t1|Name=Ggra10019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MKENLTSPAKLFKLFPKTSSLSNRTDIPTTTKMPDSTPKHAFMAPLTLSS
RRHNQQPSTTHRKALLRMALPQNPVLRHSVAEWGLNIDAQDHFNSISALH
VQPPLLRVPNLLTPAQCEALIAAQSANMTESDLYLNYRLNTDSHSQRCGF
RSNVTHDEPALRPVLEQIHRLLGFTNRSFVFAEQLWTRPTRRTVVIRDVT
TVRYEPGEGVPAHVDGKDCTVLICLQEPKRGGRTIFPKDGVYVEQTQGTA
LIYHSKEKLLHFAEEVEEGTKWVLQLLIDFAVRSDELDMQVDFATGMVQV
AS*
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spliced messenger RNA

>Ggra10019.t1 ID=Ggra10019.t1|Name=Ggra10019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000222_pilon:77290..78198- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAGAATCTGACTTCTCCGGCTAAGTTGTTTAAGTTGTTTCCGAA
GACCTCTTCTCTATCGAACAGAACTGATATCCCTACCACAACCAAAATGC
CTGACTCCACACCCAAGCATGCCTTCATGGCGCCTCTCACACTGTCTTCA
CGCCGTCACAATCAACAACCCTCCACAACACATAGAAAGGCTCTGTTAAG
AATGGCGTTACCACAGAACCCCGTTCTTCGCCACAGCGTGGCAGAATGGG
GGCTCAATATCGATGCGCAAGACCACTTTAACTCAATATCGGCTCTCCAT
GTGCAACCTCCGTTGCTACGAGTCCCGAACTTGCTCACACCAGCCCAATG
CGAGGCACTAATTGCGGCACAAAGTGCAAACATGACCGAGTCAGACTTGT
ATCTTAACTATCGTCTTAACACCGATTCACACAGTCAACGCTGTGGCTTT
CGCTCGAATGTTACCCATGACGAACCGGCACTTCGACCCGTTTTGGAGCA
AATTCATAGGTTACTCGGCTTCACCAACCGCTCATTCGTGTTCGCTGAAC
AGCTTTGGACCCGTCCGACAAGGCGTACAGTTGTTATTCGCGATGTTACT
ACAGTACGTTATGAGCCAGGTGAAGGTGTCCCGGCCCATGTTGATGGAAA
GGATTGCACTGTACTCATTTGTCTACAAGAACCGAAGAGAGGAGGTCGCA
CAATTTTTCCGAAAGATGGCGTGTATGTCGAGCAAACCCAAGGTACAGCA
TTGATCTATCATAGCAAAGAAAAACTGCTGCACTTTGCTGAGGAAGTTGA
AGAAGGTACTAAATGGGTACTCCAACTGTTGATTGACTTCGCTGTGCGCT
CGGATGAGCTGGATATGCAGGTGGACTTTGCCACTGGTATGGTTCAAGTC
GCATCTTGA
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protein sequence of Ggra10019.t1

>Ggra10019.t1 ID=Ggra10019.t1|Name=Ggra10019.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MKENLTSPAKLFKLFPKTSSLSNRTDIPTTTKMPDSTPKHAFMAPLTLSS
RRHNQQPSTTHRKALLRMALPQNPVLRHSVAEWGLNIDAQDHFNSISALH
VQPPLLRVPNLLTPAQCEALIAAQSANMTESDLYLNYRLNTDSHSQRCGF
RSNVTHDEPALRPVLEQIHRLLGFTNRSFVFAEQLWTRPTRRTVVIRDVT
TVRYEPGEGVPAHVDGKDCTVLICLQEPKRGGRTIFPKDGVYVEQTQGTA
LIYHSKEKLLHFAEEVEEGTKWVLQLLIDFAVRSDELDMQVDFATGMVQV
AS*
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mRNA from alignment at tig00000222_pilon:77290..78198-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10019.t1 ID=Ggra10019.t1|Name=Ggra10019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000222_pilon:77290..78198- (Gracilaria gracilis GNS1m male)
ATGAAAGAGAATCTGACTTCTCCGGCTAAGTTGTTTAAGTTGTTTCCGAA
GACCTCTTCTCTATCGAACAGAACTGATATCCCTACCACAACCAAAATGC
CTGACTCCACACCCAAGCATGCCTTCATGGCGCCTCTCACACTGTCTTCA
CGCCGTCACAATCAACAACCCTCCACAACACATAGAAAGGCTCTGTTAAG
AATGGCGTTACCACAGAACCCCGTTCTTCGCCACAGCGTGGCAGAATGGG
GGCTCAATATCGATGCGCAAGACCACTTTAACTCAATATCGGCTCTCCAT
GTGCAACCTCCGTTGCTACGAGTCCCGAACTTGCTCACACCAGCCCAATG
CGAGGCACTAATTGCGGCACAAAGTGCAAACATGACCGAGTCAGACTTGT
ATCTTAACTATCGTCTTAACACCGATTCACACAGTCAACGCTGTGGCTTT
CGCTCGAATGTTACCCATGACGAACCGGCACTTCGACCCGTTTTGGAGCA
AATTCATAGGTTACTCGGCTTCACCAACCGCTCATTCGTGTTCGCTGAAC
AGCTTTGGACCCGTCCGACAAGGCGTACAGTTGTTATTCGCGATGTTACT
ACAGTACGTTATGAGCCAGGTGAAGGTGTCCCGGCCCATGTTGATGGAAA
GGATTGCACTGTACTCATTTGTCTACAAGAACCGAAGAGAGGAGGTCGCA
CAATTTTTCCGAAAGATGGCGTGTATGTCGAGCAAACCCAAGGTACAGCA
TTGATCTATCATAGCAAAGAAAAACTGCTGCACTTTGCTGAGGAAGTTGA
AGAAGGTACTAAATGGGTACTCCAACTGTTGATTGACTTCGCTGTGCGCT
CGGATGAGCTGGATATGCAGGTGGACTTTGCCACTGGTATGGTTCAAGTC
GCATCTTGA
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Coding sequence (CDS) from alignment at tig00000222_pilon:77290..78198-

>Ggra10019.t1 ID=Ggra10019.t1|Name=Ggra10019.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000222_pilon:77290..78198- (Gracilaria gracilis GNS1m male)
ATGAAAGAGAATCTGACTTCTCCGGCTAAGTTGTTTAAGTTGTTTCCGAA
GACCTCTTCTCTATCGAACAGAACTGATATCCCTACCACAACCAAAATGC
CTGACTCCACACCCAAGCATGCCTTCATGGCGCCTCTCACACTGTCTTCA
CGCCGTCACAATCAACAACCCTCCACAACACATAGAAAGGCTCTGTTAAG
AATGGCGTTACCACAGAACCCCGTTCTTCGCCACAGCGTGGCAGAATGGG
GGCTCAATATCGATGCGCAAGACCACTTTAACTCAATATCGGCTCTCCAT
GTGCAACCTCCGTTGCTACGAGTCCCGAACTTGCTCACACCAGCCCAATG
CGAGGCACTAATTGCGGCACAAAGTGCAAACATGACCGAGTCAGACTTGT
ATCTTAACTATCGTCTTAACACCGATTCACACAGTCAACGCTGTGGCTTT
CGCTCGAATGTTACCCATGACGAACCGGCACTTCGACCCGTTTTGGAGCA
AATTCATAGGTTACTCGGCTTCACCAACCGCTCATTCGTGTTCGCTGAAC
AGCTTTGGACCCGTCCGACAAGGCGTACAGTTGTTATTCGCGATGTTACT
ACAGTACGTTATGAGCCAGGTGAAGGTGTCCCGGCCCATGTTGATGGAAA
GGATTGCACTGTACTCATTTGTCTACAAGAACCGAAGAGAGGAGGTCGCA
CAATTTTTCCGAAAGATGGCGTGTATGTCGAGCAAACCCAAGGTACAGCA
TTGATCTATCATAGCAAAGAAAAACTGCTGCACTTTGCTGAGGAAGTTGA
AGAAGGTACTAAATGGGTACTCCAACTGTTGATTGACTTCGCTGTGCGCT
CGGATGAGCTGGATATGCAGGTGGACTTTGCCACTGGTATGGTTCAAGTC
GCATCTTGA
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