Ggra10016.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10016.t1
Unique NameGgra10016.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length415
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:65310..66554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703375.1
PFAMsFAD_binding_3
Max annot lvl2759|Eukaryota
Evalue3.04e-47
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
DescriptionFAD binding
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10016Ggra10016Gracilaria gracilis GNS1m malegenetig00000222_pilon 65310..66554 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10016.t1.stop1Ggra10016.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 65310..65312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10016.t1.CDS1Ggra10016.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 65310..66554 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10016.t1.exon1Ggra10016.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 65310..66554 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10016.t1.start1Ggra10016.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 66552..66554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10016.t1Ggra10016.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 65310..66554 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10016.t1 ID=Ggra10016.t1|Name=Ggra10016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=415bp
MNRAITAASAATKVPILIVGGGLGGFTAALSLHRAGIQNNIIMPMQNFTQ
KARTGVFLGGSAVRILDRLGLGSQYRALGTPMYRIQVEDIKGKQIIGFNL
DEIGTEVWTVPREYMQQLYLESIPPESVSFNTKFRSLQVQTAGVKVKILD
LNKGKIASKEGQQAFIDTRFVIGADGLNSAVRMCMSRPVMTAPSGVFSWQ
AVVRNRNIDDFPLHVGKEIWDRNLRFGFARMTPTEVVWWGIVSDLHEVIL
RPFTPYLMRLFQRFPSSVLELIDSIESDRDIRRAEMKNVWPEEFPWVDNN
SSRIALVGDAGRPRNIGNFHTSTTLSIEDSYILANYLADQNEKGMLTAGP
SLERYALNRDERKAIIDQFSTRYNILSFSKSLLRKYVTKQLLRISVEQLA
LGGMPLTLPGDPIR*
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spliced messenger RNA

>Ggra10016.t1 ID=Ggra10016.t1|Name=Ggra10016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00000222_pilon:65310..66554- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGAGCCATTACCGCAGCATCCGCGGCAACCAAAGTTCCCATTCT
GATTGTTGGTGGTGGCCTTGGGGGATTCACAGCAGCTCTATCCTTACACA
GAGCGGGAATCCAGAATAACATCATTATGCCAATGCAGAACTTCACTCAG
AAAGCTAGAACTGGTGTGTTCTTGGGAGGTTCTGCTGTGAGGATTCTAGA
TCGGTTGGGGCTAGGATCGCAATATCGTGCGCTTGGAACGCCTATGTATC
GAATCCAGGTCGAGGATATCAAGGGAAAGCAGATCATCGGCTTCAATTTG
GATGAGATTGGAACAGAAGTATGGACAGTCCCACGCGAATACATGCAGCA
GCTTTATCTTGAATCTATCCCGCCGGAATCTGTTTCCTTCAACACCAAAT
TTCGGTCGCTCCAGGTTCAAACAGCTGGTGTCAAAGTGAAGATTCTTGAC
CTGAACAAAGGAAAGATTGCCTCAAAAGAGGGACAACAGGCTTTCATAGA
CACGAGGTTTGTTATCGGAGCAGATGGCCTAAACTCGGCTGTTCGAATGT
GTATGTCTCGCCCAGTAATGACCGCTCCTTCAGGGGTCTTCTCATGGCAG
GCTGTCGTTCGGAATCGCAACATTGATGACTTCCCGTTGCATGTAGGAAA
GGAAATCTGGGATCGCAACCTCCGATTCGGGTTTGCCAGGATGACACCAA
CAGAAGTTGTGTGGTGGGGGATTGTGTCCGATCTTCACGAGGTCATTCTT
CGGCCTTTCACCCCGTATTTAATGCGATTGTTTCAGAGATTCCCGAGTTC
TGTTTTAGAACTCATAGATTCTATCGAATCCGACAGGGATATTCGTCGTG
CAGAGATGAAGAATGTGTGGCCTGAAGAGTTCCCATGGGTAGATAACAAC
TCTTCTCGAATTGCTCTAGTAGGGGATGCTGGACGACCGAGAAACATCGG
AAACTTCCACACTAGCACAACCCTTTCTATTGAAGACAGCTATATCCTTG
CGAATTATCTTGCTGACCAGAACGAAAAAGGTATGCTAACTGCTGGTCCA
AGTCTGGAACGTTACGCGCTCAATAGAGACGAGCGCAAGGCTATCATAGA
CCAGTTCTCAACTCGCTACAACATCCTTTCCTTCTCGAAATCTCTTCTTC
GCAAGTACGTAACCAAACAACTGCTTCGAATATCTGTTGAGCAACTTGCA
CTTGGCGGTATGCCTTTAACGCTACCAGGTGATCCTATAAGGTAG
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protein sequence of Ggra10016.t1

>Ggra10016.t1 ID=Ggra10016.t1|Name=Ggra10016.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=415bp
MNRAITAASAATKVPILIVGGGLGGFTAALSLHRAGIQNNIIMPMQNFTQ
KARTGVFLGGSAVRILDRLGLGSQYRALGTPMYRIQVEDIKGKQIIGFNL
DEIGTEVWTVPREYMQQLYLESIPPESVSFNTKFRSLQVQTAGVKVKILD
LNKGKIASKEGQQAFIDTRFVIGADGLNSAVRMCMSRPVMTAPSGVFSWQ
AVVRNRNIDDFPLHVGKEIWDRNLRFGFARMTPTEVVWWGIVSDLHEVIL
RPFTPYLMRLFQRFPSSVLELIDSIESDRDIRRAEMKNVWPEEFPWVDNN
SSRIALVGDAGRPRNIGNFHTSTTLSIEDSYILANYLADQNEKGMLTAGP
SLERYALNRDERKAIIDQFSTRYNILSFSKSLLRKYVTKQLLRISVEQLA
LGGMPLTLPGDPIR*
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mRNA from alignment at tig00000222_pilon:65310..66554-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10016.t1 ID=Ggra10016.t1|Name=Ggra10016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00000222_pilon:65310..66554- (Gracilaria gracilis GNS1m male)
ATGAACAGAGCCATTACCGCAGCATCCGCGGCAACCAAAGTTCCCATTCT
GATTGTTGGTGGTGGCCTTGGGGGATTCACAGCAGCTCTATCCTTACACA
GAGCGGGAATCCAGAATAACATCATTATGCCAATGCAGAACTTCACTCAG
AAAGCTAGAACTGGTGTGTTCTTGGGAGGTTCTGCTGTGAGGATTCTAGA
TCGGTTGGGGCTAGGATCGCAATATCGTGCGCTTGGAACGCCTATGTATC
GAATCCAGGTCGAGGATATCAAGGGAAAGCAGATCATCGGCTTCAATTTG
GATGAGATTGGAACAGAAGTATGGACAGTCCCACGCGAATACATGCAGCA
GCTTTATCTTGAATCTATCCCGCCGGAATCTGTTTCCTTCAACACCAAAT
TTCGGTCGCTCCAGGTTCAAACAGCTGGTGTCAAAGTGAAGATTCTTGAC
CTGAACAAAGGAAAGATTGCCTCAAAAGAGGGACAACAGGCTTTCATAGA
CACGAGGTTTGTTATCGGAGCAGATGGCCTAAACTCGGCTGTTCGAATGT
GTATGTCTCGCCCAGTAATGACCGCTCCTTCAGGGGTCTTCTCATGGCAG
GCTGTCGTTCGGAATCGCAACATTGATGACTTCCCGTTGCATGTAGGAAA
GGAAATCTGGGATCGCAACCTCCGATTCGGGTTTGCCAGGATGACACCAA
CAGAAGTTGTGTGGTGGGGGATTGTGTCCGATCTTCACGAGGTCATTCTT
CGGCCTTTCACCCCGTATTTAATGCGATTGTTTCAGAGATTCCCGAGTTC
TGTTTTAGAACTCATAGATTCTATCGAATCCGACAGGGATATTCGTCGTG
CAGAGATGAAGAATGTGTGGCCTGAAGAGTTCCCATGGGTAGATAACAAC
TCTTCTCGAATTGCTCTAGTAGGGGATGCTGGACGACCGAGAAACATCGG
AAACTTCCACACTAGCACAACCCTTTCTATTGAAGACAGCTATATCCTTG
CGAATTATCTTGCTGACCAGAACGAAAAAGGTATGCTAACTGCTGGTCCA
AGTCTGGAACGTTACGCGCTCAATAGAGACGAGCGCAAGGCTATCATAGA
CCAGTTCTCAACTCGCTACAACATCCTTTCCTTCTCGAAATCTCTTCTTC
GCAAGTACGTAACCAAACAACTGCTTCGAATATCTGTTGAGCAACTTGCA
CTTGGCGGTATGCCTTTAACGCTACCAGGTGATCCTATAAGGTAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:65310..66554-

>Ggra10016.t1 ID=Ggra10016.t1|Name=Ggra10016.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1245bp|location=Sequence derived from alignment at tig00000222_pilon:65310..66554- (Gracilaria gracilis GNS1m male)
ATGAACAGAGCCATTACCGCAGCATCCGCGGCAACCAAAGTTCCCATTCT
GATTGTTGGTGGTGGCCTTGGGGGATTCACAGCAGCTCTATCCTTACACA
GAGCGGGAATCCAGAATAACATCATTATGCCAATGCAGAACTTCACTCAG
AAAGCTAGAACTGGTGTGTTCTTGGGAGGTTCTGCTGTGAGGATTCTAGA
TCGGTTGGGGCTAGGATCGCAATATCGTGCGCTTGGAACGCCTATGTATC
GAATCCAGGTCGAGGATATCAAGGGAAAGCAGATCATCGGCTTCAATTTG
GATGAGATTGGAACAGAAGTATGGACAGTCCCACGCGAATACATGCAGCA
GCTTTATCTTGAATCTATCCCGCCGGAATCTGTTTCCTTCAACACCAAAT
TTCGGTCGCTCCAGGTTCAAACAGCTGGTGTCAAAGTGAAGATTCTTGAC
CTGAACAAAGGAAAGATTGCCTCAAAAGAGGGACAACAGGCTTTCATAGA
CACGAGGTTTGTTATCGGAGCAGATGGCCTAAACTCGGCTGTTCGAATGT
GTATGTCTCGCCCAGTAATGACCGCTCCTTCAGGGGTCTTCTCATGGCAG
GCTGTCGTTCGGAATCGCAACATTGATGACTTCCCGTTGCATGTAGGAAA
GGAAATCTGGGATCGCAACCTCCGATTCGGGTTTGCCAGGATGACACCAA
CAGAAGTTGTGTGGTGGGGGATTGTGTCCGATCTTCACGAGGTCATTCTT
CGGCCTTTCACCCCGTATTTAATGCGATTGTTTCAGAGATTCCCGAGTTC
TGTTTTAGAACTCATAGATTCTATCGAATCCGACAGGGATATTCGTCGTG
CAGAGATGAAGAATGTGTGGCCTGAAGAGTTCCCATGGGTAGATAACAAC
TCTTCTCGAATTGCTCTAGTAGGGGATGCTGGACGACCGAGAAACATCGG
AAACTTCCACACTAGCACAACCCTTTCTATTGAAGACAGCTATATCCTTG
CGAATTATCTTGCTGACCAGAACGAAAAAGGTATGCTAACTGCTGGTCCA
AGTCTGGAACGTTACGCGCTCAATAGAGACGAGCGCAAGGCTATCATAGA
CCAGTTCTCAACTCGCTACAACATCCTTTCCTTCTCGAAATCTCTTCTTC
GCAAGTACGTAACCAAACAACTGCTTCGAATATCTGTTGAGCAACTTGCA
CTTGGCGGTATGCCTTTAACGCTACCAGGTGATCCTATAAGGTAG
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