Ggra10013.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10013.t1
Unique Name	Ggra10013.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	357

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000222_pilon	contig	tig00000222_pilon:58227..59297 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005650835.1
PFAMs	Tfb4
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03143
KEGG Pathway	ko03022,ko03420,ko05203,map03022,map03420,map05203
KEGG Module	M00290
Evalue	1.26e-47
EggNOG OGs	COG5242@1\|root,KOG2487@2759\|Eukaryota,37KH5@33090\|Viridiplantae,34KNC@3041\|Chlorophyta
Description	Transcription factor Tfb4
COG category	KL
BRITE	ko00000,ko00001,ko00002,ko03021,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10013	Ggra10013	Gracilaria gracilis GNS1m male	gene	tig00000222_pilon 58227..59297 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10013.t1.start1	Ggra10013.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000222_pilon 58227..58229 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10013.t1.CDS1	Ggra10013.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000222_pilon 58227..59297 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10013.t1.exon1	Ggra10013.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000222_pilon 58227..59297 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10013.t1.stop1	Ggra10013.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000222_pilon 59295..59297 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10013.t1	Ggra10013.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000222_pilon 58227..59297 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000222_pilon:58227..59297+
coding sequence from alignment at tig00000222_pilon:58227..59297+

mRNA sequence

>Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp
MRDPTDPFRVKAADDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQAL
QSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDY
DESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDP
NICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVH
FNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQ
QAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKV
DFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIVNPL
RRPPRP*

spliced messenger RNA

>Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000222_pilon:58227..59297+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGATCCCACAGATCCCTTCAGAGTCAAAGCTGCAGACGATGCCCA
AGACCTTCTAGTGCTTATCCTCGATACATCTATTCGCTCTTGGCTTCAAC
TATCTGGAAAGGATCAGAAAAAAGCTATGCATGATTCCATACAAGCTCTC
CAATCAGTCACAGAACAACTACTTGTATTCTTGAATACCTTTTTATTGCT
ACATGAAGCAAATCGAGTGTGCGTGATATTCTCCGGTTCAGATCGGTCAA
GACTTGTATACCCTGCCTTTCCGGAGCCAGAAACTGTCGCGCCTGATTAT
GATGAATCCATTGAAGACGTATCGTTTGATGCCCTAAAGGGATATGCCTC
TCACCATCACAGAGCCGCAGATCCGCAGCAGATCGTGCGCGATGTCAAGA
GGGCCGTTGAAGAGGGTATTGCGGCATCTCTACGAAAGCAGGAAGATCCC
AACATCTGCAGCAAGTATTCATGCATGAGCTCTGCACTGGCAACAGCGCT
CTGCCTCTTAAATAGAGCTCGTCGGATTCAAGTTGAGCGTGCTGCAATGA
GCCTCGGCCAGGATAGAGACCGACTGGAAATAGTCGAGCAGAATGTTCAC
TTCAATGGTCGGATACTAAGCGTGGTCGCAGGTCCTGATGCTCCAGATCA
ATATGTATCAGTCATGAATTGCATTTTCTCTGCTCAGAGGCTGGGAGTGC
CTATTGATTCTTGCGTACTTCTGAATGAGAAAGATTCTACTTATTTTCAG
CAAGCTGCTCGTCTTACGAACGGAGTATACATGCGACCGGAAGAATTCTC
TACGTCTAAACCAGACGCACTAATTCAGTACCTACAAACTGTGTTTATTG
TGGACAAGCAAAGCCGGGACTTCCTCGCAATGCCAATTCCGGACAAAGTG
GATTTCAGGGCGTCTTGTATGGAAACTAGTGAAATAATCGACAACGGCTT
TACATGCTCCATATGCTTGTCGACTTTCAGCCCTTCCGTGGGAAAGGGAG
CAGCCATGTGCCCTGTATGCAATGCGAGATTTGCCATCGTTAATCCTCTG
AGGCGACCACCAAGACCGTAG

protein sequence of Ggra10013.t1

>Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MRDPTDPFRVKAADDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQAL
QSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDY
DESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDP
NICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVH
FNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQ
QAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKV
DFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIVNPL
RRPPRP*

mRNA from alignment at tig00000222_pilon:58227..59297+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000222_pilon:58227..59297+ (Gracilaria gracilis GNS1m male)
ATGCGCGATCCCACAGATCCCTTCAGAGTCAAAGCTGCAGACGATGCCCA
AGACCTTCTAGTGCTTATCCTCGATACATCTATTCGCTCTTGGCTTCAAC
TATCTGGAAAGGATCAGAAAAAAGCTATGCATGATTCCATACAAGCTCTC
CAATCAGTCACAGAACAACTACTTGTATTCTTGAATACCTTTTTATTGCT
ACATGAAGCAAATCGAGTGTGCGTGATATTCTCCGGTTCAGATCGGTCAA
GACTTGTATACCCTGCCTTTCCGGAGCCAGAAACTGTCGCGCCTGATTAT
GATGAATCCATTGAAGACGTATCGTTTGATGCCCTAAAGGGATATGCCTC
TCACCATCACAGAGCCGCAGATCCGCAGCAGATCGTGCGCGATGTCAAGA
GGGCCGTTGAAGAGGGTATTGCGGCATCTCTACGAAAGCAGGAAGATCCC
AACATCTGCAGCAAGTATTCATGCATGAGCTCTGCACTGGCAACAGCGCT
CTGCCTCTTAAATAGAGCTCGTCGGATTCAAGTTGAGCGTGCTGCAATGA
GCCTCGGCCAGGATAGAGACCGACTGGAAATAGTCGAGCAGAATGTTCAC
TTCAATGGTCGGATACTAAGCGTGGTCGCAGGTCCTGATGCTCCAGATCA
ATATGTATCAGTCATGAATTGCATTTTCTCTGCTCAGAGGCTGGGAGTGC
CTATTGATTCTTGCGTACTTCTGAATGAGAAAGATTCTACTTATTTTCAG
CAAGCTGCTCGTCTTACGAACGGAGTATACATGCGACCGGAAGAATTCTC
TACGTCTAAACCAGACGCACTAATTCAGTACCTACAAACTGTGTTTATTG
TGGACAAGCAAAGCCGGGACTTCCTCGCAATGCCAATTCCGGACAAAGTG
GATTTCAGGGCGTCTTGTATGGAAACTAGTGAAATAATCGACAACGGCTT
TACATGCTCCATATGCTTGTCGACTTTCAGCCCTTCCGTGGGAAAGGGAG
CAGCCATGTGCCCTGTATGCAATGCGAGATTTGCCATCGTTAATCCTCTG
AGGCGACCACCAAGACCGTAG

Coding sequence (CDS) from alignment at tig00000222_pilon:58227..59297+

>Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00000222_pilon:58227..59297+ (Gracilaria gracilis GNS1m male)
ATGCGCGATCCCACAGATCCCTTCAGAGTCAAAGCTGCAGACGATGCCCA
AGACCTTCTAGTGCTTATCCTCGATACATCTATTCGCTCTTGGCTTCAAC
TATCTGGAAAGGATCAGAAAAAAGCTATGCATGATTCCATACAAGCTCTC
CAATCAGTCACAGAACAACTACTTGTATTCTTGAATACCTTTTTATTGCT
ACATGAAGCAAATCGAGTGTGCGTGATATTCTCCGGTTCAGATCGGTCAA
GACTTGTATACCCTGCCTTTCCGGAGCCAGAAACTGTCGCGCCTGATTAT
GATGAATCCATTGAAGACGTATCGTTTGATGCCCTAAAGGGATATGCCTC
TCACCATCACAGAGCCGCAGATCCGCAGCAGATCGTGCGCGATGTCAAGA
GGGCCGTTGAAGAGGGTATTGCGGCATCTCTACGAAAGCAGGAAGATCCC
AACATCTGCAGCAAGTATTCATGCATGAGCTCTGCACTGGCAACAGCGCT
CTGCCTCTTAAATAGAGCTCGTCGGATTCAAGTTGAGCGTGCTGCAATGA
GCCTCGGCCAGGATAGAGACCGACTGGAAATAGTCGAGCAGAATGTTCAC
TTCAATGGTCGGATACTAAGCGTGGTCGCAGGTCCTGATGCTCCAGATCA
ATATGTATCAGTCATGAATTGCATTTTCTCTGCTCAGAGGCTGGGAGTGC
CTATTGATTCTTGCGTACTTCTGAATGAGAAAGATTCTACTTATTTTCAG
CAAGCTGCTCGTCTTACGAACGGAGTATACATGCGACCGGAAGAATTCTC
TACGTCTAAACCAGACGCACTAATTCAGTACCTACAAACTGTGTTTATTG
TGGACAAGCAAAGCCGGGACTTCCTCGCAATGCCAATTCCGGACAAAGTG
GATTTCAGGGCGTCTTGTATGGAAACTAGTGAAATAATCGACAACGGCTT
TACATGCTCCATATGCTTGTCGACTTTCAGCCCTTCCGTGGGAAAGGGAG
CAGCCATGTGCCCTGTATGCAATGCGAGATTTGCCATCGTTAATCCTCTG
AGGCGACCACCAAGACCGTAG