Ggra10012.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10012.t1
Unique NameGgra10012.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length321
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:56459..57421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708343.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Evalue1.58e-96
EggNOG OGsKOG0770@1|root,KOG0770@2759|Eukaryota
Descriptionmagnesium ion export from mitochondrion
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10012Ggra10012Gracilaria gracilis GNS1m malegenetig00000222_pilon 56459..57421 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10012.t1.stop1Ggra10012.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 56459..56461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10012.t1.CDS1Ggra10012.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 56459..57421 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10012.t1.exon1Ggra10012.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 56459..57421 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10012.t1.start1Ggra10012.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 57419..57421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10012.t1Ggra10012.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 56459..57421 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10012.t1 ID=Ggra10012.t1|Name=Ggra10012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=321bp
MGREPTVSPGPGSEKWTVISDLIAGGLAGICCDAVLHPVDTVKSRLHVQR
GPPFKYRSMLHGFRLITRQEGIQKGLYAGFGAVIVGTIPTHAVMFASYKA
LKRKGEDGITDEQHLAAVDFASASIGEVCALPFYVPAEVIAKRMQVAKLG
PARNYRSTLHAGRSILKSEGFQGLLAGFWPTMLRDVPYTALQFSFFSVAK
DQYRGHTERHDLNDAEATVLGVGVGTAAAILTNPFDVIKTRFMTQSTGSG
QKYHSILQCFGRLFKEEGLSVLMRGVFARVLWVGPGSGITLAVYERSSKF
FRSKWGLEESRVSTLQHEAL*
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spliced messenger RNA

>Ggra10012.t1 ID=Ggra10012.t1|Name=Ggra10012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00000222_pilon:56459..57421- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGAGAACCTACTGTCTCACCAGGCCCAGGATCGGAGAAATGGAC
CGTTATCTCTGATCTCATTGCTGGTGGTTTGGCCGGTATATGTTGCGATG
CTGTTCTCCATCCAGTCGATACGGTCAAATCACGCCTCCATGTGCAACGA
GGTCCCCCATTCAAGTACCGTTCAATGCTACACGGTTTTCGCCTAATCAC
AAGGCAAGAAGGGATACAAAAAGGGCTCTATGCTGGATTTGGGGCAGTTA
TCGTAGGCACTATCCCTACACATGCAGTAATGTTTGCAAGCTACAAGGCA
CTCAAGAGAAAAGGTGAAGACGGGATCACAGACGAACAACATTTGGCCGC
GGTCGACTTCGCAAGTGCTTCTATAGGTGAAGTCTGTGCATTGCCATTTT
ATGTTCCAGCTGAAGTGATTGCAAAAAGGATGCAAGTTGCAAAACTGGGT
CCTGCACGGAACTATAGATCAACACTACATGCAGGACGATCAATACTGAA
ATCAGAGGGCTTTCAAGGCCTTCTAGCCGGGTTTTGGCCGACTATGTTAC
GTGATGTACCGTATACGGCGTTGCAGTTTTCCTTCTTCAGTGTTGCAAAA
GATCAGTACCGAGGACATACAGAAAGACATGACTTGAATGATGCCGAGGC
TACTGTACTTGGTGTCGGAGTTGGAACGGCCGCAGCTATACTAACGAATC
CGTTCGATGTTATCAAGACGCGATTCATGACTCAGAGCACAGGTTCAGGA
CAAAAGTATCATTCAATTTTGCAATGCTTCGGTAGACTTTTTAAAGAGGA
GGGACTCTCAGTTTTGATGCGCGGAGTATTTGCTCGAGTACTGTGGGTGG
GTCCAGGTAGTGGCATAACTCTGGCCGTGTATGAGAGGTCATCCAAGTTT
TTCCGGTCCAAATGGGGCTTGGAAGAATCACGAGTCTCTACTCTCCAGCA
TGAAGCGCTGTAA
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protein sequence of Ggra10012.t1

>Ggra10012.t1 ID=Ggra10012.t1|Name=Ggra10012.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=321bp
MGREPTVSPGPGSEKWTVISDLIAGGLAGICCDAVLHPVDTVKSRLHVQR
GPPFKYRSMLHGFRLITRQEGIQKGLYAGFGAVIVGTIPTHAVMFASYKA
LKRKGEDGITDEQHLAAVDFASASIGEVCALPFYVPAEVIAKRMQVAKLG
PARNYRSTLHAGRSILKSEGFQGLLAGFWPTMLRDVPYTALQFSFFSVAK
DQYRGHTERHDLNDAEATVLGVGVGTAAAILTNPFDVIKTRFMTQSTGSG
QKYHSILQCFGRLFKEEGLSVLMRGVFARVLWVGPGSGITLAVYERSSKF
FRSKWGLEESRVSTLQHEAL*
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mRNA from alignment at tig00000222_pilon:56459..57421-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10012.t1 ID=Ggra10012.t1|Name=Ggra10012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00000222_pilon:56459..57421- (Gracilaria gracilis GNS1m male)
ATGGGACGAGAACCTACTGTCTCACCAGGCCCAGGATCGGAGAAATGGAC
CGTTATCTCTGATCTCATTGCTGGTGGTTTGGCCGGTATATGTTGCGATG
CTGTTCTCCATCCAGTCGATACGGTCAAATCACGCCTCCATGTGCAACGA
GGTCCCCCATTCAAGTACCGTTCAATGCTACACGGTTTTCGCCTAATCAC
AAGGCAAGAAGGGATACAAAAAGGGCTCTATGCTGGATTTGGGGCAGTTA
TCGTAGGCACTATCCCTACACATGCAGTAATGTTTGCAAGCTACAAGGCA
CTCAAGAGAAAAGGTGAAGACGGGATCACAGACGAACAACATTTGGCCGC
GGTCGACTTCGCAAGTGCTTCTATAGGTGAAGTCTGTGCATTGCCATTTT
ATGTTCCAGCTGAAGTGATTGCAAAAAGGATGCAAGTTGCAAAACTGGGT
CCTGCACGGAACTATAGATCAACACTACATGCAGGACGATCAATACTGAA
ATCAGAGGGCTTTCAAGGCCTTCTAGCCGGGTTTTGGCCGACTATGTTAC
GTGATGTACCGTATACGGCGTTGCAGTTTTCCTTCTTCAGTGTTGCAAAA
GATCAGTACCGAGGACATACAGAAAGACATGACTTGAATGATGCCGAGGC
TACTGTACTTGGTGTCGGAGTTGGAACGGCCGCAGCTATACTAACGAATC
CGTTCGATGTTATCAAGACGCGATTCATGACTCAGAGCACAGGTTCAGGA
CAAAAGTATCATTCAATTTTGCAATGCTTCGGTAGACTTTTTAAAGAGGA
GGGACTCTCAGTTTTGATGCGCGGAGTATTTGCTCGAGTACTGTGGGTGG
GTCCAGGTAGTGGCATAACTCTGGCCGTGTATGAGAGGTCATCCAAGTTT
TTCCGGTCCAAATGGGGCTTGGAAGAATCACGAGTCTCTACTCTCCAGCA
TGAAGCGCTGTAA
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Coding sequence (CDS) from alignment at tig00000222_pilon:56459..57421-

>Ggra10012.t1 ID=Ggra10012.t1|Name=Ggra10012.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=963bp|location=Sequence derived from alignment at tig00000222_pilon:56459..57421- (Gracilaria gracilis GNS1m male)
ATGGGACGAGAACCTACTGTCTCACCAGGCCCAGGATCGGAGAAATGGAC
CGTTATCTCTGATCTCATTGCTGGTGGTTTGGCCGGTATATGTTGCGATG
CTGTTCTCCATCCAGTCGATACGGTCAAATCACGCCTCCATGTGCAACGA
GGTCCCCCATTCAAGTACCGTTCAATGCTACACGGTTTTCGCCTAATCAC
AAGGCAAGAAGGGATACAAAAAGGGCTCTATGCTGGATTTGGGGCAGTTA
TCGTAGGCACTATCCCTACACATGCAGTAATGTTTGCAAGCTACAAGGCA
CTCAAGAGAAAAGGTGAAGACGGGATCACAGACGAACAACATTTGGCCGC
GGTCGACTTCGCAAGTGCTTCTATAGGTGAAGTCTGTGCATTGCCATTTT
ATGTTCCAGCTGAAGTGATTGCAAAAAGGATGCAAGTTGCAAAACTGGGT
CCTGCACGGAACTATAGATCAACACTACATGCAGGACGATCAATACTGAA
ATCAGAGGGCTTTCAAGGCCTTCTAGCCGGGTTTTGGCCGACTATGTTAC
GTGATGTACCGTATACGGCGTTGCAGTTTTCCTTCTTCAGTGTTGCAAAA
GATCAGTACCGAGGACATACAGAAAGACATGACTTGAATGATGCCGAGGC
TACTGTACTTGGTGTCGGAGTTGGAACGGCCGCAGCTATACTAACGAATC
CGTTCGATGTTATCAAGACGCGATTCATGACTCAGAGCACAGGTTCAGGA
CAAAAGTATCATTCAATTTTGCAATGCTTCGGTAGACTTTTTAAAGAGGA
GGGACTCTCAGTTTTGATGCGCGGAGTATTTGCTCGAGTACTGTGGGTGG
GTCCAGGTAGTGGCATAACTCTGGCCGTGTATGAGAGGTCATCCAAGTTT
TTCCGGTCCAAATGGGGCTTGGAAGAATCACGAGTCTCTACTCTCCAGCA
TGAAGCGCTGTAA
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