Ggra10011.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10011.t1
Unique NameGgra10011.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:55083..56255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FKU6
Preferred nameWARS2
PFAMstRNA-synt_1b
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01867,ko:K02946,ko:K13346
KEGG TC3.A.20.1
KEGG ReactionR03664
KEGG Pathwayko00970,ko03010,ko04146,map00970,map03010,map04146
KEGG ModuleM00178,M00179,M00359,M00360
GOsGO:0000166,GO:0000959,GO:0001568,GO:0001570,GO:0001944,GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030154,GO:0030554,GO:0031974,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035239,GO:0035295,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048514,GO:0048731,GO:0048856,GO:0048869,GO:0070013,GO:0070127,GO:0070183,GO:0071704,GO:0071944,GO:0072358,GO:0072359,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue2.22e-148
EggNOG OGsCOG0180@1|root,KOG2713@2759|Eukaryota
EC6.1.1.2
Descriptiontryptophanyl-tRNA aminoacylation
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10011Ggra10011Gracilaria gracilis GNS1m malegenetig00000222_pilon 55083..56255 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10011.t1.start1Ggra10011.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 55083..55085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10011.t1.CDS1Ggra10011.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 55083..56255 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10011.t1.exon1Ggra10011.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 55083..56255 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10011.t1.stop1Ggra10011.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 56253..56255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10011.t1Ggra10011.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 55083..56255 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10011.t1 ID=Ggra10011.t1|Name=Ggra10011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=391bp
MFAFVAAPLSTRRLCWYGHRLCSRRTPRSPLMTLTSPQPQQQQPTAASTE
RKKRVLSGVQPTGALHLGNYLGAIRQWTTNQQLYDNFFVVVDMHAITVPH
DRKTLSDCTLQTVAMYIACGIDPQKSKIFIQSHVKAHAELTWLLNCCTPI
GWLHRMIQYKEKALKQGENVSVGLFDYPVLMAADVLLYQPDLVPVGEDQR
QHIELARDVARRYNDMYCKKKRPRTFREPKTLMQTTGARVMSLEDGTNKM
SKSAENDNSRVNMTDNAAAIKRKVKKCKTDSFEGLEYDNPQRPECNNLLS
IYQLVTDKTKEEVLAECQDMRWGAFKPLLTDAVTEHLAPIQATYNELLGD
KAYLCSVLKDGFEHASEEAERTLRRVKSDMGFVLPSELGY*
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spliced messenger RNA

>Ggra10011.t1 ID=Ggra10011.t1|Name=Ggra10011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000222_pilon:55083..56255+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCGTTCGTTGCCGCTCCGCTTTCCACTCGGCGGCTGTGCTGGTA
TGGCCACCGTCTGTGCTCGCGTCGAACGCCCCGCTCTCCGTTGATGACGC
TCACCTCCCCgcagccgcagcagcagcagcCGACGGCCGCGTCGACGGAG
CGGAAGAAGCGCGTTTTGTCAGGCGTTCAACCGACGGGCGCTCTTCATCT
GGGAAACTACCTTGGCGCCATTCGACAGTGGACCACCAATCAACAGTTGT
ACGATAACTTCTTCGTCGTCGTCGACATGCACGCCATCACCGTTCCGCAC
GACCGCAAGACGCTTTCCGATTGCACCTTGCAGACTGTCGCTATGTACAT
TGCCTGCGGCATTGATCCACAGAAGAGCAAGATTTTTATCCAGAGTCATG
TCAAGGCGCATGCGGAGCTTACCTGGCTTTTGAACTGTTGCACTCCAATT
GGATGGCTTCATCGAATGATTCAGTACAAGGAGAAGGCTCTCAAACAGGG
TGAGAATGTATCGGTTGGCCTTTTTGACTATCCAGTGTTGATGGCAGCAG
ATGTGCTACTGTATCAGCCTGATCTGGTTCCCGTCGGCGAGGATCAACGA
CAACATATTGAATTAGCGAGAGATGTTGCGCGTCGCTACAACGACATGTA
CTGTAAAAAGAAGCGGCCCCGCACTTTTCGAGAGCCCAAGACGCTCATGC
AAACCACTGGTGCGAGAGTAATGAGTCTGGAGGATGGCACCAACAAGATG
TCCAAGAGCGCTGAAAACGACAACTCTCGTGTAAATATGACTGACAATGC
TGCCGCAATAAAGCGCAAGGTGAAGAAGTGTAAGACTGACTCGTTCGAAG
GACTGGAGTATGATAATCCACAACGGCCCGAGTGCAACAATCTTCTTTCT
ATTTATCAACTTGTCACGGATAAGACAAAGGAGGAGGTGTTGGCAGAGTG
TCAAGATATGAGATGGGGAGCATTTAAGCCGTTGCTTACCGACGCTGTCA
CCGAACACTTGGCTCCAATACAGGCCACATATAATGAGCTTCTCGGGGAC
AAGGCTTACTTGTGCTCTGTTTTGAAGGACGGATTTGAGCATGCTAGCGA
AGAGGCTGAGAGGACTTTGCGAAGAGTGAAGAGCGATATGGGGTTTGTCC
TCCCTTCCGAGCTTGGGTATTGA
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protein sequence of Ggra10011.t1

>Ggra10011.t1 ID=Ggra10011.t1|Name=Ggra10011.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MFAFVAAPLSTRRLCWYGHRLCSRRTPRSPLMTLTSPQPQQQQPTAASTE
RKKRVLSGVQPTGALHLGNYLGAIRQWTTNQQLYDNFFVVVDMHAITVPH
DRKTLSDCTLQTVAMYIACGIDPQKSKIFIQSHVKAHAELTWLLNCCTPI
GWLHRMIQYKEKALKQGENVSVGLFDYPVLMAADVLLYQPDLVPVGEDQR
QHIELARDVARRYNDMYCKKKRPRTFREPKTLMQTTGARVMSLEDGTNKM
SKSAENDNSRVNMTDNAAAIKRKVKKCKTDSFEGLEYDNPQRPECNNLLS
IYQLVTDKTKEEVLAECQDMRWGAFKPLLTDAVTEHLAPIQATYNELLGD
KAYLCSVLKDGFEHASEEAERTLRRVKSDMGFVLPSELGY*
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mRNA from alignment at tig00000222_pilon:55083..56255+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10011.t1 ID=Ggra10011.t1|Name=Ggra10011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000222_pilon:55083..56255+ (Gracilaria gracilis GNS1m male)
ATGTTCGCGTTCGTTGCCGCTCCGCTTTCCACTCGGCGGCTGTGCTGGTA
TGGCCACCGTCTGTGCTCGCGTCGAACGCCCCGCTCTCCGTTGATGACGC
TCACCTCCCCgcagccgcagcagcagcagcCGACGGCCGCGTCGACGGAG
CGGAAGAAGCGCGTTTTGTCAGGCGTTCAACCGACGGGCGCTCTTCATCT
GGGAAACTACCTTGGCGCCATTCGACAGTGGACCACCAATCAACAGTTGT
ACGATAACTTCTTCGTCGTCGTCGACATGCACGCCATCACCGTTCCGCAC
GACCGCAAGACGCTTTCCGATTGCACCTTGCAGACTGTCGCTATGTACAT
TGCCTGCGGCATTGATCCACAGAAGAGCAAGATTTTTATCCAGAGTCATG
TCAAGGCGCATGCGGAGCTTACCTGGCTTTTGAACTGTTGCACTCCAATT
GGATGGCTTCATCGAATGATTCAGTACAAGGAGAAGGCTCTCAAACAGGG
TGAGAATGTATCGGTTGGCCTTTTTGACTATCCAGTGTTGATGGCAGCAG
ATGTGCTACTGTATCAGCCTGATCTGGTTCCCGTCGGCGAGGATCAACGA
CAACATATTGAATTAGCGAGAGATGTTGCGCGTCGCTACAACGACATGTA
CTGTAAAAAGAAGCGGCCCCGCACTTTTCGAGAGCCCAAGACGCTCATGC
AAACCACTGGTGCGAGAGTAATGAGTCTGGAGGATGGCACCAACAAGATG
TCCAAGAGCGCTGAAAACGACAACTCTCGTGTAAATATGACTGACAATGC
TGCCGCAATAAAGCGCAAGGTGAAGAAGTGTAAGACTGACTCGTTCGAAG
GACTGGAGTATGATAATCCACAACGGCCCGAGTGCAACAATCTTCTTTCT
ATTTATCAACTTGTCACGGATAAGACAAAGGAGGAGGTGTTGGCAGAGTG
TCAAGATATGAGATGGGGAGCATTTAAGCCGTTGCTTACCGACGCTGTCA
CCGAACACTTGGCTCCAATACAGGCCACATATAATGAGCTTCTCGGGGAC
AAGGCTTACTTGTGCTCTGTTTTGAAGGACGGATTTGAGCATGCTAGCGA
AGAGGCTGAGAGGACTTTGCGAAGAGTGAAGAGCGATATGGGGTTTGTCC
TCCCTTCCGAGCTTGGGTATTGA
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Coding sequence (CDS) from alignment at tig00000222_pilon:55083..56255+

>Ggra10011.t1 ID=Ggra10011.t1|Name=Ggra10011.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000222_pilon:55083..56255+ (Gracilaria gracilis GNS1m male)
ATGTTCGCGTTCGTTGCCGCTCCGCTTTCCACTCGGCGGCTGTGCTGGTA
TGGCCACCGTCTGTGCTCGCGTCGAACGCCCCGCTCTCCGTTGATGACGC
TCACCTCCCCgcagccgcagcagcagcagcCGACGGCCGCGTCGACGGAG
CGGAAGAAGCGCGTTTTGTCAGGCGTTCAACCGACGGGCGCTCTTCATCT
GGGAAACTACCTTGGCGCCATTCGACAGTGGACCACCAATCAACAGTTGT
ACGATAACTTCTTCGTCGTCGTCGACATGCACGCCATCACCGTTCCGCAC
GACCGCAAGACGCTTTCCGATTGCACCTTGCAGACTGTCGCTATGTACAT
TGCCTGCGGCATTGATCCACAGAAGAGCAAGATTTTTATCCAGAGTCATG
TCAAGGCGCATGCGGAGCTTACCTGGCTTTTGAACTGTTGCACTCCAATT
GGATGGCTTCATCGAATGATTCAGTACAAGGAGAAGGCTCTCAAACAGGG
TGAGAATGTATCGGTTGGCCTTTTTGACTATCCAGTGTTGATGGCAGCAG
ATGTGCTACTGTATCAGCCTGATCTGGTTCCCGTCGGCGAGGATCAACGA
CAACATATTGAATTAGCGAGAGATGTTGCGCGTCGCTACAACGACATGTA
CTGTAAAAAGAAGCGGCCCCGCACTTTTCGAGAGCCCAAGACGCTCATGC
AAACCACTGGTGCGAGAGTAATGAGTCTGGAGGATGGCACCAACAAGATG
TCCAAGAGCGCTGAAAACGACAACTCTCGTGTAAATATGACTGACAATGC
TGCCGCAATAAAGCGCAAGGTGAAGAAGTGTAAGACTGACTCGTTCGAAG
GACTGGAGTATGATAATCCACAACGGCCCGAGTGCAACAATCTTCTTTCT
ATTTATCAACTTGTCACGGATAAGACAAAGGAGGAGGTGTTGGCAGAGTG
TCAAGATATGAGATGGGGAGCATTTAAGCCGTTGCTTACCGACGCTGTCA
CCGAACACTTGGCTCCAATACAGGCCACATATAATGAGCTTCTCGGGGAC
AAGGCTTACTTGTGCTCTGTTTTGAAGGACGGATTTGAGCATGCTAGCGA
AGAGGCTGAGAGGACTTTGCGAAGAGTGAAGAGCGATATGGGGTTTGTCC
TCCCTTCCGAGCTTGGGTATTGA
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