Ggra10010.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10010.t1
Unique Name	Ggra10010.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	598

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000222_pilon	contig	tig00000222_pilon:51586..53379 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707224.1
PFAMs	ABC_tran,ABC_tran_Xtn
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0005215,GO:0008150,GO:0009605,GO:0009607,GO:0009624,GO:0043207,GO:0050896,GO:0051704,GO:0051707
Evalue	1.44e-220
EggNOG OGs	COG0488@1\|root,KOG0927@2759\|Eukaryota
Description	ATPase activity
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10010	Ggra10010	Gracilaria gracilis GNS1m male	gene	tig00000222_pilon 51586..54558 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10010.t1.stop1	Ggra10010.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000222_pilon 51586..51588 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10010.t1.CDS1	Ggra10010.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000222_pilon 51586..53379 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10010.t1.exon1	Ggra10010.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000222_pilon 51586..53379 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10010.t1.start1	Ggra10010.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000222_pilon 53377..53379 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10010.t1	Ggra10010.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000222_pilon 51586..53379 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000222_pilon:51586..53379-
coding sequence from alignment at tig00000222_pilon:51586..53379-

mRNA sequence

>Ggra10010.t1 ID=Ggra10010.t1|Name=Ggra10010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=598bp
MVFRNTTVLQSVTWGVKTGERVGLIGENGSGKTTQLRIIADLLKPTSGEV
VRSSKKTRASFLRQEFVDELDPTRTLREEFYSAFHEEMKLADEYAQCEKD
IATVGEDMESLERLLNLFEDLRLQCEENDVWNLDARIDKVMPGLGFTEDD
GDKLVAAFSGGWKVRIGLGKVLLQDPDLLLLDEPSNHLDNESVEWLEEFL
QITKLPMVVVSHDREFLDKVCTKIVDIEGGEAFEYPGNYSTFVKLKKEQR
KAWESAYERQQKFIKEQQNYIKRNRRVPARSSQVKSREKMLERMERTGQI
VRRPPRQGKPLVFRFPPAPRSGRDCIVIDELQHGYGGKVLFQDASIAIER
GDRIALIGPNGSGKSTLLRLIVGLEAPQGGSVECQELTNIKVAYYEQNQA
DALDLEVTVLETLTRAAPTDMRYEDIRALLGKFLFKGDAVEKKVSALSGG
EKARLALAKIMLEPANVLVLDEPGNHLSISAKEMLEEALQHFQGTLLLVS
HDRYLISQVATQILAVEDKSLILYDGDYKSYMEKHQELREKLQARFIPGV
SEIKSAPKFVAEEPIEVSSKKVKRKKNFGGSGVQSGRTKEMNAKRWK*

spliced messenger RNA

>Ggra10010.t1 ID=Ggra10010.t1|Name=Ggra10010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1794bp|location=Sequence derived from alignment at tig00000222_pilon:51586..53379- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATTCCGAAATACAACAGTGTTGCAGAGTGTAACATGGGGCGTGAA
AACTGGAGAGCGTGTGGGGCTCATTGGCGAGAATGGCTCCGGGAAAACGA
CGCAGCTTCGCATTATTGCAGATCTGTTGAAACCAACATCTGGAGAAGTA
GTTAGATCGTCAAAGAAAACTAGAGCTTCATTCCTGCGTCAAGAGTTTGT
GGATGAATTGGATCCAACTCGAACTCTTCGTGAAGAGTTTTATTCTGCTT
TTCATGAGGAAATGAAACTGGCTGATGAATATGCACAATGCGAGAAGGAT
ATAGCGACTGTAGGAGAAGATATGGAATCCCTCGAACGACTACTGAACCT
TTTCGAGGACCTTAGACTGCAATGTGAAGAAAACGATGTTTGGAACTTGG
ATGCGAGAATTGACAAAGTAATGCCTGGACTGGGCTTTACTGAAGATGAC
GGCGATAAACTCGTGGCAGCGTTTTCAGGTGGATGGAAAGTTCGAATCGG
TCTCGGAAAGGTACTTCTCCAAGATCCGGACCTCTTGTTGTTAGATGAGC
CTTCTAATCATTTAGACAATGAATCCGTGGAATGGCTGGAAGAATTCCTT
CAAATAACCAAGCTCCCTATGGTTGTAGTTTCTCATGACCGAGAATTCCT
AGACAAGGTCTGCACCAAGATTGTGGATATTGAAGGTGGAGAAGCCTTTG
AATATCCAGGCAACTACTCGACTTTCGTTAAACTCAAGAAGGAGCAACGA
AAGGCTTGGGAGTCTGCATACGAACGCCAGCAAAAGTTCATCAAGGAACA
ACAGAACTATATCAAGAGAAATCGACGTGTACCAGCGAGATCAAGTCAAG
TCAAGAGTAGAGAGAAAATGCTCGAACGGATGGAGCGAACTGGGCAAATT
GTTCGGAGGCCCCCGCGTCAAGGGAAACCACTCGTTTTCAGATTCCCTCC
AGCTCCTCGATCAGGTCGTGACTGTATTGTCATCGACGAGCTTCAACATG
GATATGGAGGAAAAGTACTGTTCCAAGATGCATCGATAGCGATCGAGCGC
GGGGATCGCATTGCGTTAATCGGTCCGAATGGCAGTGGAAAAAGCACGCT
TCTACGTTTGATCGTTGGTCTTGAAGCGCCTCAGGGCGGCTCGGTTGAAT
GTCAGGAACTGACGAACATCAAGGTTGCTTACTACGAGCAAAATCAAGCC
GATGCTCTTGATTTGGAAGTCACCGTGCTCGAAACTCTTACCAGAGCAGC
ACCAACTGATATGAGATATGAGGATATTCGAGCTCTACTTGGAAAGTTTC
TGTTCAAAGGTGACGCTGTGGAGAAGAAGGTTTCCGCGCTGAGTGGTGGA
GAGAAGGCTAGATTAGCCCTAGCGAAGATCATGCTCGAGCCTGCGAATGT
GCTCGTTCTTGACGAACCTGGAAACCACCTGTCAATATCGGCAAAGGAAA
TGCTTGAGGAAGCTTTGCAACATTTCCAAGGTACTTTGCTGCTTGTGAGC
CATGATCGATACTTGATTTCACAGGTTGCAACGCAGATATTGGCAGTAGA
AGATAAAAGCCTCATACTCTACGATGGGGATTACAAATCATACATGGAGA
AACATCAGGAACTGAGAGAGAAGCTACAAGCTCGATTCATCCCTGGTGTT
TCAGAGATTAAGAGTGCTCCGAAATTTGTTGCCGAAGAACCGATCGAAGT
ATCCAGCAAGAAGGTAAAGAGAAAGAAGAACTTTGGGGGAAGTGGTGTTC
AAAGCGGCAGAACCAAAGAGATGAATGCGAAGAGATGGAAGTAA

protein sequence of Ggra10010.t1

>Ggra10010.t1 ID=Ggra10010.t1|Name=Ggra10010.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=598bp
MVFRNTTVLQSVTWGVKTGERVGLIGENGSGKTTQLRIIADLLKPTSGEV
VRSSKKTRASFLRQEFVDELDPTRTLREEFYSAFHEEMKLADEYAQCEKD
IATVGEDMESLERLLNLFEDLRLQCEENDVWNLDARIDKVMPGLGFTEDD
GDKLVAAFSGGWKVRIGLGKVLLQDPDLLLLDEPSNHLDNESVEWLEEFL
QITKLPMVVVSHDREFLDKVCTKIVDIEGGEAFEYPGNYSTFVKLKKEQR
KAWESAYERQQKFIKEQQNYIKRNRRVPARSSQVKSREKMLERMERTGQI
VRRPPRQGKPLVFRFPPAPRSGRDCIVIDELQHGYGGKVLFQDASIAIER
GDRIALIGPNGSGKSTLLRLIVGLEAPQGGSVECQELTNIKVAYYEQNQA
DALDLEVTVLETLTRAAPTDMRYEDIRALLGKFLFKGDAVEKKVSALSGG
EKARLALAKIMLEPANVLVLDEPGNHLSISAKEMLEEALQHFQGTLLLVS
HDRYLISQVATQILAVEDKSLILYDGDYKSYMEKHQELREKLQARFIPGV
SEIKSAPKFVAEEPIEVSSKKVKRKKNFGGSGVQSGRTKEMNAKRWK*

mRNA from alignment at tig00000222_pilon:51586..53379-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10010.t1 ID=Ggra10010.t1|Name=Ggra10010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1794bp|location=Sequence derived from alignment at tig00000222_pilon:51586..53379- (Gracilaria gracilis GNS1m male)
ATGGTATTCCGAAATACAACAGTGTTGCAGAGTGTAACATGGGGCGTGAA
AACTGGAGAGCGTGTGGGGCTCATTGGCGAGAATGGCTCCGGGAAAACGA
CGCAGCTTCGCATTATTGCAGATCTGTTGAAACCAACATCTGGAGAAGTA
GTTAGATCGTCAAAGAAAACTAGAGCTTCATTCCTGCGTCAAGAGTTTGT
GGATGAATTGGATCCAACTCGAACTCTTCGTGAAGAGTTTTATTCTGCTT
TTCATGAGGAAATGAAACTGGCTGATGAATATGCACAATGCGAGAAGGAT
ATAGCGACTGTAGGAGAAGATATGGAATCCCTCGAACGACTACTGAACCT
TTTCGAGGACCTTAGACTGCAATGTGAAGAAAACGATGTTTGGAACTTGG
ATGCGAGAATTGACAAAGTAATGCCTGGACTGGGCTTTACTGAAGATGAC
GGCGATAAACTCGTGGCAGCGTTTTCAGGTGGATGGAAAGTTCGAATCGG
TCTCGGAAAGGTACTTCTCCAAGATCCGGACCTCTTGTTGTTAGATGAGC
CTTCTAATCATTTAGACAATGAATCCGTGGAATGGCTGGAAGAATTCCTT
CAAATAACCAAGCTCCCTATGGTTGTAGTTTCTCATGACCGAGAATTCCT
AGACAAGGTCTGCACCAAGATTGTGGATATTGAAGGTGGAGAAGCCTTTG
AATATCCAGGCAACTACTCGACTTTCGTTAAACTCAAGAAGGAGCAACGA
AAGGCTTGGGAGTCTGCATACGAACGCCAGCAAAAGTTCATCAAGGAACA
ACAGAACTATATCAAGAGAAATCGACGTGTACCAGCGAGATCAAGTCAAG
TCAAGAGTAGAGAGAAAATGCTCGAACGGATGGAGCGAACTGGGCAAATT
GTTCGGAGGCCCCCGCGTCAAGGGAAACCACTCGTTTTCAGATTCCCTCC
AGCTCCTCGATCAGGTCGTGACTGTATTGTCATCGACGAGCTTCAACATG
GATATGGAGGAAAAGTACTGTTCCAAGATGCATCGATAGCGATCGAGCGC
GGGGATCGCATTGCGTTAATCGGTCCGAATGGCAGTGGAAAAAGCACGCT
TCTACGTTTGATCGTTGGTCTTGAAGCGCCTCAGGGCGGCTCGGTTGAAT
GTCAGGAACTGACGAACATCAAGGTTGCTTACTACGAGCAAAATCAAGCC
GATGCTCTTGATTTGGAAGTCACCGTGCTCGAAACTCTTACCAGAGCAGC
ACCAACTGATATGAGATATGAGGATATTCGAGCTCTACTTGGAAAGTTTC
TGTTCAAAGGTGACGCTGTGGAGAAGAAGGTTTCCGCGCTGAGTGGTGGA
GAGAAGGCTAGATTAGCCCTAGCGAAGATCATGCTCGAGCCTGCGAATGT
GCTCGTTCTTGACGAACCTGGAAACCACCTGTCAATATCGGCAAAGGAAA
TGCTTGAGGAAGCTTTGCAACATTTCCAAGGTACTTTGCTGCTTGTGAGC
CATGATCGATACTTGATTTCACAGGTTGCAACGCAGATATTGGCAGTAGA
AGATAAAAGCCTCATACTCTACGATGGGGATTACAAATCATACATGGAGA
AACATCAGGAACTGAGAGAGAAGCTACAAGCTCGATTCATCCCTGGTGTT
TCAGAGATTAAGAGTGCTCCGAAATTTGTTGCCGAAGAACCGATCGAAGT
ATCCAGCAAGAAGGTAAAGAGAAAGAAGAACTTTGGGGGAAGTGGTGTTC
AAAGCGGCAGAACCAAAGAGATGAATGCGAAGAGATGGAAGTAA

Coding sequence (CDS) from alignment at tig00000222_pilon:51586..53379-

>Ggra10010.t1 ID=Ggra10010.t1|Name=Ggra10010.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1794bp|location=Sequence derived from alignment at tig00000222_pilon:51586..53379- (Gracilaria gracilis GNS1m male)
ATGGTATTCCGAAATACAACAGTGTTGCAGAGTGTAACATGGGGCGTGAA
AACTGGAGAGCGTGTGGGGCTCATTGGCGAGAATGGCTCCGGGAAAACGA
CGCAGCTTCGCATTATTGCAGATCTGTTGAAACCAACATCTGGAGAAGTA
GTTAGATCGTCAAAGAAAACTAGAGCTTCATTCCTGCGTCAAGAGTTTGT
GGATGAATTGGATCCAACTCGAACTCTTCGTGAAGAGTTTTATTCTGCTT
TTCATGAGGAAATGAAACTGGCTGATGAATATGCACAATGCGAGAAGGAT
ATAGCGACTGTAGGAGAAGATATGGAATCCCTCGAACGACTACTGAACCT
TTTCGAGGACCTTAGACTGCAATGTGAAGAAAACGATGTTTGGAACTTGG
ATGCGAGAATTGACAAAGTAATGCCTGGACTGGGCTTTACTGAAGATGAC
GGCGATAAACTCGTGGCAGCGTTTTCAGGTGGATGGAAAGTTCGAATCGG
TCTCGGAAAGGTACTTCTCCAAGATCCGGACCTCTTGTTGTTAGATGAGC
CTTCTAATCATTTAGACAATGAATCCGTGGAATGGCTGGAAGAATTCCTT
CAAATAACCAAGCTCCCTATGGTTGTAGTTTCTCATGACCGAGAATTCCT
AGACAAGGTCTGCACCAAGATTGTGGATATTGAAGGTGGAGAAGCCTTTG
AATATCCAGGCAACTACTCGACTTTCGTTAAACTCAAGAAGGAGCAACGA
AAGGCTTGGGAGTCTGCATACGAACGCCAGCAAAAGTTCATCAAGGAACA
ACAGAACTATATCAAGAGAAATCGACGTGTACCAGCGAGATCAAGTCAAG
TCAAGAGTAGAGAGAAAATGCTCGAACGGATGGAGCGAACTGGGCAAATT
GTTCGGAGGCCCCCGCGTCAAGGGAAACCACTCGTTTTCAGATTCCCTCC
AGCTCCTCGATCAGGTCGTGACTGTATTGTCATCGACGAGCTTCAACATG
GATATGGAGGAAAAGTACTGTTCCAAGATGCATCGATAGCGATCGAGCGC
GGGGATCGCATTGCGTTAATCGGTCCGAATGGCAGTGGAAAAAGCACGCT
TCTACGTTTGATCGTTGGTCTTGAAGCGCCTCAGGGCGGCTCGGTTGAAT
GTCAGGAACTGACGAACATCAAGGTTGCTTACTACGAGCAAAATCAAGCC
GATGCTCTTGATTTGGAAGTCACCGTGCTCGAAACTCTTACCAGAGCAGC
ACCAACTGATATGAGATATGAGGATATTCGAGCTCTACTTGGAAAGTTTC
TGTTCAAAGGTGACGCTGTGGAGAAGAAGGTTTCCGCGCTGAGTGGTGGA
GAGAAGGCTAGATTAGCCCTAGCGAAGATCATGCTCGAGCCTGCGAATGT
GCTCGTTCTTGACGAACCTGGAAACCACCTGTCAATATCGGCAAAGGAAA
TGCTTGAGGAAGCTTTGCAACATTTCCAAGGTACTTTGCTGCTTGTGAGC
CATGATCGATACTTGATTTCACAGGTTGCAACGCAGATATTGGCAGTAGA
AGATAAAAGCCTCATACTCTACGATGGGGATTACAAATCATACATGGAGA
AACATCAGGAACTGAGAGAGAAGCTACAAGCTCGATTCATCCCTGGTGTT
TCAGAGATTAAGAGTGCTCCGAAATTTGTTGCCGAAGAACCGATCGAAGT
ATCCAGCAAGAAGGTAAAGAGAAAGAAGAACTTTGGGGGAAGTGGTGTTC
AAAGCGGCAGAACCAAAGAGATGAATGCGAAGAGATGGAAGTAA