Ggra10008.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10008.t1
Unique NameGgra10008.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:46302..47007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS144CT
Preferred nameTAF12
PFAMsTFIID_20kDa
Max annot lvl2759|Eukaryota
KEGG koko:K03126
KEGG Pathwayko03022,map03022
GOsGO:0000123,GO:0000124,GO:0000125,GO:0000428,GO:0000988,GO:0000989,GO:0001076,GO:0001085,GO:0001102,GO:0001129,GO:0001132,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006325,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0017025,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0023051,GO:0030880,GO:0030914,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033276,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045935,GO:0046483,GO:0046983,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2001141
Evalue1.33e-27
EggNOG OGsCOG5624@1|root,KOG1142@2759|Eukaryota
DescriptionRNA polymerase II activating transcription factor binding
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10008Ggra10008Gracilaria gracilis GNS1m malegenetig00000222_pilon 46302..47007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10008.t1Ggra10008.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 46302..47007 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10008.t1.stop1Ggra10008.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 46302..46304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10008.t1.CDS1Ggra10008.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 46302..46538 -
Ggra10008.t1.CDS2Ggra10008.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000222_pilon 46650..46710 -
Ggra10008.t1.CDS3Ggra10008.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000222_pilon 46901..47007 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10008.t1.exon1Ggra10008.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 46302..46538 -
Ggra10008.t1.exon2Ggra10008.t1.exon2Gracilaria gracilis GNS1m maleexontig00000222_pilon 46650..46710 -
Ggra10008.t1.exon3Ggra10008.t1.exon3Gracilaria gracilis GNS1m maleexontig00000222_pilon 46901..47007 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10008.t1.intron1Ggra10008.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000222_pilon 46539..46649 -
Ggra10008.t1.intron2Ggra10008.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000222_pilon 46711..46900 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10008.t1.start1Ggra10008.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 47005..47007 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10008.t1 ID=Ggra10008.t1|Name=Ggra10008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=135bp
MSARVGGSGATSGDSRTPKSQPFISQQARELLPPSKIQELLQEVAPGEVL
DSEVEEFLQEHIDEFVESVTEFGCLMAKHRRSKVLEARDIQFHLESAWNI
RVPGYGDDPRPAKRNVTTPIHNARLQAVQRAQQQ*
back to top

spliced messenger RNA

>Ggra10008.t1 ID=Ggra10008.t1|Name=Ggra10008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000222_pilon:46302..47007- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGAGAGTTGGAGGAAGCGGCGCAACTTCCGGGGATTCCCGAAC
CCCGAAGAGTCAGCCCTTCATTTCACAGCAAGCCAGGGAACTGCTGCCCC
CCAGCAAAATTCAGGAGCTTCTTCAAGAGGTCGCACCAGGCGAAGTATTG
GATTCCGAAGTCGAAGAGTTTCTTCAAGAGCATATCGATGAATTTGTTGA
ATCTGTGACAGAGTTCGGATGCCTCATGGCCAAACATCGGAGAAGCAAAG
TGTTGGAAGCGAGAGACATACAATTTCATCTTGAATCTGCGTGGAACATC
AGAGTGCCTGGATACGGTGATGATCCTCGCCCAGCTAAACGAAATGTAAC
TACACCTATTCATAACGCTCGCCTCCAAGCTGTTCAAAGGGCACAACAGC
AATGA
back to top

protein sequence of Ggra10008.t1

>Ggra10008.t1 ID=Ggra10008.t1|Name=Ggra10008.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=135bp
MSARVGGSGATSGDSRTPKSQPFISQQARELLPPSKIQELLQEVAPGEVL
DSEVEEFLQEHIDEFVESVTEFGCLMAKHRRSKVLEARDIQFHLESAWNI
RVPGYGDDPRPAKRNVTTPIHNARLQAVQRAQQQ*
back to top

mRNA from alignment at tig00000222_pilon:46302..47007-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10008.t1 ID=Ggra10008.t1|Name=Ggra10008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=706bp|location=Sequence derived from alignment at tig00000222_pilon:46302..47007- (Gracilaria gracilis GNS1m male)
ATGTCGGCGAGAGTTGGAGGAAGCGGCGCAACTTCCGGGGATTCCCGAAC
CCCGAAGAGTCAGCCCTTCATTTCACAGCAAGCCAGGGAACTGCTGCCCC
CCAGCAAGTAAGTTTTGCAAACGTGACCTCACAAACGCCTCGCAAGCGTT
AGCGACCGGAACATACAGTGCAAAATGCACTCCCAGTTCTGGCTGCGGAC
TCATCTTCGCGCCTTTTAAGTTTTTTGTAAGCTGTCTTGCGGCCTTCAAG
AGTATACAATAAGTATTTCTAACCTGTAATTTGAATTTGCGAGACAGAAT
TCAGGAGCTTCTTCAAGAGGTCGCACCAGGCGAAGTATTGGATTCCGAAG
TCGAAGAGGTACGGTAATTGATGATGAAACGCTACAACGCCCATATTGTA
CGTGGGTTGTAAGCTTTTAGAAGCAAATGAGAACTAACACCCTCCCGTTA
ATCTAAAAATGACCAGCAGTTTCTTCAAGAGCATATCGATGAATTTGTTG
AATCTGTGACAGAGTTCGGATGCCTCATGGCCAAACATCGGAGAAGCAAA
GTGTTGGAAGCGAGAGACATACAATTTCATCTTGAATCTGCGTGGAACAT
CAGAGTGCCTGGATACGGTGATGATCCTCGCCCAGCTAAACGAAATGTAA
CTACACCTATTCATAACGCTCGCCTCCAAGCTGTTCAAAGGGCACAACAG
CAATGA
back to top

Coding sequence (CDS) from alignment at tig00000222_pilon:46302..47007-

>Ggra10008.t1 ID=Ggra10008.t1|Name=Ggra10008.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00000222_pilon:46302..47007- (Gracilaria gracilis GNS1m male)
ATGTCGGCGAGAGTTGGAGGAAGCGGCGCAACTTCCGGGGATTCCCGAAC
CCCGAAGAGTCAGCCCTTCATTTCACAGCAAGCCAGGGAACTGCTGCCCC
CCAGCAAAATTCAGGAGCTTCTTCAAGAGGTCGCACCAGGCGAAGTATTG
GATTCCGAAGTCGAAGAGTTTCTTCAAGAGCATATCGATGAATTTGTTGA
ATCTGTGACAGAGTTCGGATGCCTCATGGCCAAACATCGGAGAAGCAAAG
TGTTGGAAGCGAGAGACATACAATTTCATCTTGAATCTGCGTGGAACATC
AGAGTGCCTGGATACGGTGATGATCCTCGCCCAGCTAAACGAAATGTAAC
TACACCTATTCATAACGCTCGCCTCCAAGCTGTTCAAAGGGCACAACAGC
AATGA
back to top