Ggra10006.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10006.t1
Unique NameGgra10006.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length642
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:40863..42788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708689.1
Preferred nameISA1
PFAMsAlpha-amylase,CBM_48
Max annot lvl2759|Eukaryota
KEGG koko:K01214
KEGG ReactionR09995,R11261
KEGG Pathwayko00500,ko01100,ko01110,map00500,map01100,map01110
KEGG ModuleM00565
GOsGO:0000272,GO:0003674,GO:0003824,GO:0004133,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005982,GO:0005983,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009507,GO:0009536,GO:0009987,GO:0010021,GO:0010368,GO:0015980,GO:0016052,GO:0016787,GO:0016798,GO:0019156,GO:0032991,GO:0043033,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901575,GO:1901576,GO:1902494,GO:2000896
Evalue9.86e-130
EggNOG OGsCOG0296@1|root,KOG0470@2759|Eukaryota
EC3.2.1.68
Description1,4-alpha-glucan branching enzyme activity
COG categoryG
CAZyCBM48,GH13
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10006Ggra10006Gracilaria gracilis GNS1m malegenetig00000222_pilon 40863..42788 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10006.t1.stop1Ggra10006.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 40863..40865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10006.t1.CDS1Ggra10006.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 40863..42788 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10006.t1.exon1Ggra10006.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 40863..42788 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10006.t1.start1Ggra10006.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 42786..42788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10006.t1Ggra10006.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 40863..42788 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10006.t1 ID=Ggra10006.t1|Name=Ggra10006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp
MIPTSHGARLLSDPYARWVESPGSAMWMRLEGENYAMKENTIENSVRTFL
RSFPSLNSIGIQHPFRPTRFAAPAAAQHFDWGDERSPKLSYGDIVIYEAH
VRGLTSAGTFESAIKRIPYLKWLGMTALQLLPIFEFNELEMDAMTGEYAL
LNKKHVDVGQRAGNYWGYSPFSWFSPMNRYSEKRSSGGPLGLKKLVRALH
EAGMQIYLDVVYNHTANSSCAFHFLNTQSSYYVGKQGHHFFKHSNISGCG
NTLAPARPMMQELVMDSLRWWVTEYRIDGFRIDAAGILCRDENGKPISKP
QIIENIVNDPVLKDTKFIVEGWDAGDQVGSPNFLLGSKHGFPQGDRFCEW
NAKWRDDTRRYVMGNRDANKHFREGIRGSPQFFSRRSGTGPAFHSVNFVS
CHDGMCMADVVSFKKRSNVNGYDEVSFNCGSEGHVSDEEVLRMRARCLRN
FMLALAISRGIPMILQGDEIGGTKDGFNNTWNDPKRFALRVPEFDIKSMT
GDNSEWGSHEGLVRFCRQVFCVRKRFEDFTKGDFMNQAKWLDMRGREKEG
RDERYVGFVVKTRDLWDSNTGSEKWVYVGFYNGAHGTRIKLPDVGVTKWS
VILDTFRWNSNCREGFEEYLVGDNGFLEIGGHSAVVAIGKA*
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spliced messenger RNA

>Ggra10006.t1 ID=Ggra10006.t1|Name=Ggra10006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1926bp|location=Sequence derived from alignment at tig00000222_pilon:40863..42788- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCTACCTCTCATGGTGCTCGTCTACTGAGTGACCCTTATGCCCG
ATGGGTGGAGTCCCCAGGTTCTGCAATGTGGATGAGACTAGAAGGGGAGA
ACTACGCCATGAAAGAAAATACCATCGAGAACAGTGTGAGGACGTTTCTC
CGCTCCTTTCCCTCTCTTAATTCGATTGGTATTCAACATCCGTTTCGACC
CACACGCTTCGCCGCTCCAGCGGCCGCACAACACTTTGACTGGGGCGACG
AAAGATCACCGAAATTGAGTTATGGTGACATTGTTATCTATGAGGCACAT
GTTCGAGGGCTCACTTCCGCCGGCACTTTCGAAAGTGCTATAAAAAGAAT
ACCGTACCTGAAGTGGCTAGGAATGACAGCCCTGCAGCTCTTACCTATCT
TTGAATTCAATGAACTTGAGATGGACGCCATGACTGGCGAATACGCCTTA
TTGAACAAGAAGCACGTAGATGTGGGTCAAAGGGCTGGTAATTATTGGGG
TTACAGTCCTTTTTCTTGGTTTTCCCCTATGAACAGGTATTCTGAGAAAC
GGAGCAGTGGTGGTCCCCTTGGGCTGAAGAAGTTGGTCCGAGCATTGCAT
GAAGCCGGAATGCAGATTTATCTTGACGTTGTTTATAACCACACCGCAAA
CTCGTCATGTGCATTCCATTTCCTGAACACTCAGTCTTCTTACTACGTAG
GCAAGCAAGGTCACCATTTCTTTAAACATAGTAACATATCTGGATGCGGG
AACACGCTTGCCCCTGCTCGTCCAATGATGCAAGAGTTGGTGATGGACAG
TCTCCGTTGGTGGGTGACGGAATACCGCATTGATGGATTTCGAATCGATG
CTGCTGGCATTCTCTGTCGAGATGAAAACGGAAAGCCCATTAGTAAACCG
CAGATCATTGAAAACATAGTCAATGATCCGGTGCTGAAGGACACAAAGTT
TATCGTGGAGGGATGGGATGCGGGAGACCAGGTTGGGTCACCAAACTTCT
TGCTTGGTTCTAAACATGGCTTTCCGCAAGGCGATCGATTTTGTGAGTGG
AATGCGAAATGGCGAGATGACACACGGCGTTACGTCATGGGCAACCGCGA
TGCGAACAAACACTTTCGAGAAGGTATTCGTGGCTCCCCCCAGTTCTTCT
CGAGGCGCAGCGGCACAGGGCCAGCGTTTCATAGCGTGAATTTTGTCTCG
TGTCACGATGGCATGTGCATGGCCGATGTGGTAAGCTTCAAAAAGAGGTC
CAACGTAAATGGATATGATGAGGTGTCGTTCAACTGTGGCAGCGAAGGTC
ACGTCAGTGATGAAGAAGTTCTGAGGATGCGAGCCCGGTGTCTTCGCAAC
TTCATGTTGGCCCTTGCCATATCGAGGGGTATCCCCATGATCCTGCAAGG
TGACGAGATTGGTGGAACAAAAGATGGCTTCAATAATACTTGGAATGATC
CAAAACGATTCGCTTTACGTGTACCAGAGTTTGACATAAAAAGTATGACC
GGGGACAATAGTGAGTGGGGGTCTCATGAGGGTTTGGTTCGGTTTTGTAG
GCAGGTCTTCTGCGTAAGGAAACGCTTTGAAGATTTTACCAAGGGGGACT
TCATGAATCAAGCGAAATGGTTGGACATGAGGGGTAGAGAAAAAGAGGGT
CGTGATGAACGATATGTTGGTTTTGTTGTGAAGACAAGAGATTTGTGGGA
CTCCAATACAGGTTCTGAGAAATGGGTTTACGTAGGGTTTTACAACGGTG
CTCATGGAACCAGGATAAAGCTGCCAGATGTGGGAGTCACTAAATGGAGC
GTCATTTTGGACACTTTTCGATGGAACTCCAACTGTAGGGAAGGTTTTGA
AGAGTATTTGGTTGGAGACAATGGCTTTTTGGAAATAGGGGGTCATTCAG
CTGTTGTTGCCATAGGGAAGGCTTGA
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protein sequence of Ggra10006.t1

>Ggra10006.t1 ID=Ggra10006.t1|Name=Ggra10006.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=642bp
MIPTSHGARLLSDPYARWVESPGSAMWMRLEGENYAMKENTIENSVRTFL
RSFPSLNSIGIQHPFRPTRFAAPAAAQHFDWGDERSPKLSYGDIVIYEAH
VRGLTSAGTFESAIKRIPYLKWLGMTALQLLPIFEFNELEMDAMTGEYAL
LNKKHVDVGQRAGNYWGYSPFSWFSPMNRYSEKRSSGGPLGLKKLVRALH
EAGMQIYLDVVYNHTANSSCAFHFLNTQSSYYVGKQGHHFFKHSNISGCG
NTLAPARPMMQELVMDSLRWWVTEYRIDGFRIDAAGILCRDENGKPISKP
QIIENIVNDPVLKDTKFIVEGWDAGDQVGSPNFLLGSKHGFPQGDRFCEW
NAKWRDDTRRYVMGNRDANKHFREGIRGSPQFFSRRSGTGPAFHSVNFVS
CHDGMCMADVVSFKKRSNVNGYDEVSFNCGSEGHVSDEEVLRMRARCLRN
FMLALAISRGIPMILQGDEIGGTKDGFNNTWNDPKRFALRVPEFDIKSMT
GDNSEWGSHEGLVRFCRQVFCVRKRFEDFTKGDFMNQAKWLDMRGREKEG
RDERYVGFVVKTRDLWDSNTGSEKWVYVGFYNGAHGTRIKLPDVGVTKWS
VILDTFRWNSNCREGFEEYLVGDNGFLEIGGHSAVVAIGKA*
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mRNA from alignment at tig00000222_pilon:40863..42788-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10006.t1 ID=Ggra10006.t1|Name=Ggra10006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1926bp|location=Sequence derived from alignment at tig00000222_pilon:40863..42788- (Gracilaria gracilis GNS1m male)
ATGATTCCTACCTCTCATGGTGCTCGTCTACTGAGTGACCCTTATGCCCG
ATGGGTGGAGTCCCCAGGTTCTGCAATGTGGATGAGACTAGAAGGGGAGA
ACTACGCCATGAAAGAAAATACCATCGAGAACAGTGTGAGGACGTTTCTC
CGCTCCTTTCCCTCTCTTAATTCGATTGGTATTCAACATCCGTTTCGACC
CACACGCTTCGCCGCTCCAGCGGCCGCACAACACTTTGACTGGGGCGACG
AAAGATCACCGAAATTGAGTTATGGTGACATTGTTATCTATGAGGCACAT
GTTCGAGGGCTCACTTCCGCCGGCACTTTCGAAAGTGCTATAAAAAGAAT
ACCGTACCTGAAGTGGCTAGGAATGACAGCCCTGCAGCTCTTACCTATCT
TTGAATTCAATGAACTTGAGATGGACGCCATGACTGGCGAATACGCCTTA
TTGAACAAGAAGCACGTAGATGTGGGTCAAAGGGCTGGTAATTATTGGGG
TTACAGTCCTTTTTCTTGGTTTTCCCCTATGAACAGGTATTCTGAGAAAC
GGAGCAGTGGTGGTCCCCTTGGGCTGAAGAAGTTGGTCCGAGCATTGCAT
GAAGCCGGAATGCAGATTTATCTTGACGTTGTTTATAACCACACCGCAAA
CTCGTCATGTGCATTCCATTTCCTGAACACTCAGTCTTCTTACTACGTAG
GCAAGCAAGGTCACCATTTCTTTAAACATAGTAACATATCTGGATGCGGG
AACACGCTTGCCCCTGCTCGTCCAATGATGCAAGAGTTGGTGATGGACAG
TCTCCGTTGGTGGGTGACGGAATACCGCATTGATGGATTTCGAATCGATG
CTGCTGGCATTCTCTGTCGAGATGAAAACGGAAAGCCCATTAGTAAACCG
CAGATCATTGAAAACATAGTCAATGATCCGGTGCTGAAGGACACAAAGTT
TATCGTGGAGGGATGGGATGCGGGAGACCAGGTTGGGTCACCAAACTTCT
TGCTTGGTTCTAAACATGGCTTTCCGCAAGGCGATCGATTTTGTGAGTGG
AATGCGAAATGGCGAGATGACACACGGCGTTACGTCATGGGCAACCGCGA
TGCGAACAAACACTTTCGAGAAGGTATTCGTGGCTCCCCCCAGTTCTTCT
CGAGGCGCAGCGGCACAGGGCCAGCGTTTCATAGCGTGAATTTTGTCTCG
TGTCACGATGGCATGTGCATGGCCGATGTGGTAAGCTTCAAAAAGAGGTC
CAACGTAAATGGATATGATGAGGTGTCGTTCAACTGTGGCAGCGAAGGTC
ACGTCAGTGATGAAGAAGTTCTGAGGATGCGAGCCCGGTGTCTTCGCAAC
TTCATGTTGGCCCTTGCCATATCGAGGGGTATCCCCATGATCCTGCAAGG
TGACGAGATTGGTGGAACAAAAGATGGCTTCAATAATACTTGGAATGATC
CAAAACGATTCGCTTTACGTGTACCAGAGTTTGACATAAAAAGTATGACC
GGGGACAATAGTGAGTGGGGGTCTCATGAGGGTTTGGTTCGGTTTTGTAG
GCAGGTCTTCTGCGTAAGGAAACGCTTTGAAGATTTTACCAAGGGGGACT
TCATGAATCAAGCGAAATGGTTGGACATGAGGGGTAGAGAAAAAGAGGGT
CGTGATGAACGATATGTTGGTTTTGTTGTGAAGACAAGAGATTTGTGGGA
CTCCAATACAGGTTCTGAGAAATGGGTTTACGTAGGGTTTTACAACGGTG
CTCATGGAACCAGGATAAAGCTGCCAGATGTGGGAGTCACTAAATGGAGC
GTCATTTTGGACACTTTTCGATGGAACTCCAACTGTAGGGAAGGTTTTGA
AGAGTATTTGGTTGGAGACAATGGCTTTTTGGAAATAGGGGGTCATTCAG
CTGTTGTTGCCATAGGGAAGGCTTGA
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Coding sequence (CDS) from alignment at tig00000222_pilon:40863..42788-

>Ggra10006.t1 ID=Ggra10006.t1|Name=Ggra10006.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1926bp|location=Sequence derived from alignment at tig00000222_pilon:40863..42788- (Gracilaria gracilis GNS1m male)
ATGATTCCTACCTCTCATGGTGCTCGTCTACTGAGTGACCCTTATGCCCG
ATGGGTGGAGTCCCCAGGTTCTGCAATGTGGATGAGACTAGAAGGGGAGA
ACTACGCCATGAAAGAAAATACCATCGAGAACAGTGTGAGGACGTTTCTC
CGCTCCTTTCCCTCTCTTAATTCGATTGGTATTCAACATCCGTTTCGACC
CACACGCTTCGCCGCTCCAGCGGCCGCACAACACTTTGACTGGGGCGACG
AAAGATCACCGAAATTGAGTTATGGTGACATTGTTATCTATGAGGCACAT
GTTCGAGGGCTCACTTCCGCCGGCACTTTCGAAAGTGCTATAAAAAGAAT
ACCGTACCTGAAGTGGCTAGGAATGACAGCCCTGCAGCTCTTACCTATCT
TTGAATTCAATGAACTTGAGATGGACGCCATGACTGGCGAATACGCCTTA
TTGAACAAGAAGCACGTAGATGTGGGTCAAAGGGCTGGTAATTATTGGGG
TTACAGTCCTTTTTCTTGGTTTTCCCCTATGAACAGGTATTCTGAGAAAC
GGAGCAGTGGTGGTCCCCTTGGGCTGAAGAAGTTGGTCCGAGCATTGCAT
GAAGCCGGAATGCAGATTTATCTTGACGTTGTTTATAACCACACCGCAAA
CTCGTCATGTGCATTCCATTTCCTGAACACTCAGTCTTCTTACTACGTAG
GCAAGCAAGGTCACCATTTCTTTAAACATAGTAACATATCTGGATGCGGG
AACACGCTTGCCCCTGCTCGTCCAATGATGCAAGAGTTGGTGATGGACAG
TCTCCGTTGGTGGGTGACGGAATACCGCATTGATGGATTTCGAATCGATG
CTGCTGGCATTCTCTGTCGAGATGAAAACGGAAAGCCCATTAGTAAACCG
CAGATCATTGAAAACATAGTCAATGATCCGGTGCTGAAGGACACAAAGTT
TATCGTGGAGGGATGGGATGCGGGAGACCAGGTTGGGTCACCAAACTTCT
TGCTTGGTTCTAAACATGGCTTTCCGCAAGGCGATCGATTTTGTGAGTGG
AATGCGAAATGGCGAGATGACACACGGCGTTACGTCATGGGCAACCGCGA
TGCGAACAAACACTTTCGAGAAGGTATTCGTGGCTCCCCCCAGTTCTTCT
CGAGGCGCAGCGGCACAGGGCCAGCGTTTCATAGCGTGAATTTTGTCTCG
TGTCACGATGGCATGTGCATGGCCGATGTGGTAAGCTTCAAAAAGAGGTC
CAACGTAAATGGATATGATGAGGTGTCGTTCAACTGTGGCAGCGAAGGTC
ACGTCAGTGATGAAGAAGTTCTGAGGATGCGAGCCCGGTGTCTTCGCAAC
TTCATGTTGGCCCTTGCCATATCGAGGGGTATCCCCATGATCCTGCAAGG
TGACGAGATTGGTGGAACAAAAGATGGCTTCAATAATACTTGGAATGATC
CAAAACGATTCGCTTTACGTGTACCAGAGTTTGACATAAAAAGTATGACC
GGGGACAATAGTGAGTGGGGGTCTCATGAGGGTTTGGTTCGGTTTTGTAG
GCAGGTCTTCTGCGTAAGGAAACGCTTTGAAGATTTTACCAAGGGGGACT
TCATGAATCAAGCGAAATGGTTGGACATGAGGGGTAGAGAAAAAGAGGGT
CGTGATGAACGATATGTTGGTTTTGTTGTGAAGACAAGAGATTTGTGGGA
CTCCAATACAGGTTCTGAGAAATGGGTTTACGTAGGGTTTTACAACGGTG
CTCATGGAACCAGGATAAAGCTGCCAGATGTGGGAGTCACTAAATGGAGC
GTCATTTTGGACACTTTTCGATGGAACTCCAACTGTAGGGAAGGTTTTGA
AGAGTATTTGGTTGGAGACAATGGCTTTTTGGAAATAGGGGGTCATTCAG
CTGTTGTTGCCATAGGGAAGGCTTGA
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