Ggra10005.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10005.t1
Unique NameGgra10005.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:27341..28617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10005Ggra10005Gracilaria gracilis GNS1m malegenetig00000222_pilon 27341..28617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10005.t1Ggra10005.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 27341..28617 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10005.t1.stop1Ggra10005.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 27341..27343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10005.t1.CDS1Ggra10005.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 27341..28332 -
Ggra10005.t1.CDS2Ggra10005.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000222_pilon 28566..28617 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10005.t1.exon1Ggra10005.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 27341..28332 -
Ggra10005.t1.exon2Ggra10005.t1.exon2Gracilaria gracilis GNS1m maleexontig00000222_pilon 28566..28617 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10005.t1.intron1Ggra10005.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000222_pilon 28333..28565 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10005.t1.start1Ggra10005.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 28615..28617 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10005.t1 ID=Ggra10005.t1|Name=Ggra10005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp
MGAGKAWKALENYWHVRRNPNELDIMHLATAFFNKRVEGRNVYKFLGLDK
EACGPRFEFGNCYKWLQSTHLWSSITRSISRVYSSQKRITPSEEVLKHHV
DETSICNAEDTEGVTEIEDTAGTAAGGRTTLSSPVKFQNNARLSRLQGTK
KTKAQVAIAQAMKRNGDNIDGLVQQSAKRNKIFANYVMLQKEKNNHMLFS
MEGTDVLLRERYITLIQKKVLLELEEGLSAANANDVADPAATVQQLALIS
AHNESSLSAGQSAAVAQEQCLIGSASTGPSSCGKAKELEDNVVILEGSRE
KDDDLFTGQFAPLSTDSSSRSIVPIRNQNATKDSDTSRISVADLLSG*
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spliced messenger RNA

>Ggra10005.t1 ID=Ggra10005.t1|Name=Ggra10005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000222_pilon:27341..28617- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCAGGAAAAGCATGGAAAGCTCTAGAAAATTACTGGCATGTCAG
GCGTAACCCGAATGAATTGGATATTATGCACTTGGCTACGGCATTTTTTA
ACAAACGTGTTGAAGGAAGAAACGTATACAAATTTTTGGGTCTAGACAAG
GAGGCATGTGGGCCGCGGTTTGAATTCGGAAACTGCTACAAATGGCTGCA
GAGCACTCACTTATGGAGCTCCATTACTAGAAGTATATCTCGTGTGTACA
GCTCCCAGAAACGTATAACCCCTTCTGAAGAGGTTCTCAAACATCATGTT
GATGAAACCTCTATATGCAATGCAGAGGACACCGAGGGTGTCACAGAAAT
CGAAGACACCGCTGGAACTGCTGCTGGTGGTCGAACTACATTATCGAGTC
CTGTTAAATTCCAGAACAATGCGAGGCTTTCCCGTTTGCAGGGAACGAAG
AAGACGAAGGCTCAGGTGGCCATTGCGCAGGCAATGAAGCGGAATGGGGA
CAATATTGACGGACTGGTTCAGCAGTCAGCTAAGCGTAACAAAATCTTTG
CAAATTACGTTATGTTACAAAAGGAAAAGAATAACCATATGCTGTTCAGT
ATGGAGGGTACGGACGTTTTATTGCGGGAGAGGTACATTACACTTATCCA
AAAAAAGGTGCTGTTGGAGCTAGAAGAGGGACTAAGTGCTGCGAACGCGA
ATGACGTTGCTGATCCTGCAGCAACTGTTCAGCAACTAGCACTAATATCT
GCCCACAACGAGAGTTCTTTGAGCGCTGGACAGAGTGCTGCCGTTGCTCA
GGAGCAATGCCTGATTGGCAGCGCAAGTACTGGCCCAAGCAGTTGCGGCA
AAGCTAAGGAACTGGAGGATAACGTGGTAATACTAGAAGGCTCACGAGAG
AAAGATGACGATTTGTTTACTGGTCAATTCGCACCGCTCTCTACAGACAG
TTCTTCACGAAGTATTGTTCCAATCCGAAATCAGAACGCCACGAAGGATT
CTGATACGTCCCGTATTAGTGTCGCAGATTTGCTTTCAGGCTAA
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protein sequence of Ggra10005.t1

>Ggra10005.t1 ID=Ggra10005.t1|Name=Ggra10005.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=348bp
MGAGKAWKALENYWHVRRNPNELDIMHLATAFFNKRVEGRNVYKFLGLDK
EACGPRFEFGNCYKWLQSTHLWSSITRSISRVYSSQKRITPSEEVLKHHV
DETSICNAEDTEGVTEIEDTAGTAAGGRTTLSSPVKFQNNARLSRLQGTK
KTKAQVAIAQAMKRNGDNIDGLVQQSAKRNKIFANYVMLQKEKNNHMLFS
MEGTDVLLRERYITLIQKKVLLELEEGLSAANANDVADPAATVQQLALIS
AHNESSLSAGQSAAVAQEQCLIGSASTGPSSCGKAKELEDNVVILEGSRE
KDDDLFTGQFAPLSTDSSSRSIVPIRNQNATKDSDTSRISVADLLSG*
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mRNA from alignment at tig00000222_pilon:27341..28617-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10005.t1 ID=Ggra10005.t1|Name=Ggra10005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1277bp|location=Sequence derived from alignment at tig00000222_pilon:27341..28617- (Gracilaria gracilis GNS1m male)
ATGGGAGCAGGAAAAGCATGGAAAGCTCTAGAAAATTACTGGCATGTCAG
GCGTATGTGACCGCATCCGAAGATACGATCTGCGGAAACGGACAGGCAAT
CGCTTAGTTTCAGAAGAAGATAGAGAATGAATTTGGAGCGCTGACCAAGC
AGCAAAAAGAATCTGACCAAACCAAAGTCAAAAAGCGCTCCGGTAGCTCA
ATTTTTCAGCGGTACAAGCGCATTAAGAAAGAATGTATCAGCTTTGAGAA
ACATGTTCAACAAGTCAAGTCTCTTTCGTTGACAGGTAACCCGAATGAAT
TGGATATTATGCACTTGGCTACGGCATTTTTTAACAAACGTGTTGAAGGA
AGAAACGTATACAAATTTTTGGGTCTAGACAAGGAGGCATGTGGGCCGCG
GTTTGAATTCGGAAACTGCTACAAATGGCTGCAGAGCACTCACTTATGGA
GCTCCATTACTAGAAGTATATCTCGTGTGTACAGCTCCCAGAAACGTATA
ACCCCTTCTGAAGAGGTTCTCAAACATCATGTTGATGAAACCTCTATATG
CAATGCAGAGGACACCGAGGGTGTCACAGAAATCGAAGACACCGCTGGAA
CTGCTGCTGGTGGTCGAACTACATTATCGAGTCCTGTTAAATTCCAGAAC
AATGCGAGGCTTTCCCGTTTGCAGGGAACGAAGAAGACGAAGGCTCAGGT
GGCCATTGCGCAGGCAATGAAGCGGAATGGGGACAATATTGACGGACTGG
TTCAGCAGTCAGCTAAGCGTAACAAAATCTTTGCAAATTACGTTATGTTA
CAAAAGGAAAAGAATAACCATATGCTGTTCAGTATGGAGGGTACGGACGT
TTTATTGCGGGAGAGGTACATTACACTTATCCAAAAAAAGGTGCTGTTGG
AGCTAGAAGAGGGACTAAGTGCTGCGAACGCGAATGACGTTGCTGATCCT
GCAGCAACTGTTCAGCAACTAGCACTAATATCTGCCCACAACGAGAGTTC
TTTGAGCGCTGGACAGAGTGCTGCCGTTGCTCAGGAGCAATGCCTGATTG
GCAGCGCAAGTACTGGCCCAAGCAGTTGCGGCAAAGCTAAGGAACTGGAG
GATAACGTGGTAATACTAGAAGGCTCACGAGAGAAAGATGACGATTTGTT
TACTGGTCAATTCGCACCGCTCTCTACAGACAGTTCTTCACGAAGTATTG
TTCCAATCCGAAATCAGAACGCCACGAAGGATTCTGATACGTCCCGTATT
AGTGTCGCAGATTTGCTTTCAGGCTAA
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Coding sequence (CDS) from alignment at tig00000222_pilon:27341..28617-

>Ggra10005.t1 ID=Ggra10005.t1|Name=Ggra10005.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00000222_pilon:27341..28617- (Gracilaria gracilis GNS1m male)
ATGGGAGCAGGAAAAGCATGGAAAGCTCTAGAAAATTACTGGCATGTCAG
GCGTAACCCGAATGAATTGGATATTATGCACTTGGCTACGGCATTTTTTA
ACAAACGTGTTGAAGGAAGAAACGTATACAAATTTTTGGGTCTAGACAAG
GAGGCATGTGGGCCGCGGTTTGAATTCGGAAACTGCTACAAATGGCTGCA
GAGCACTCACTTATGGAGCTCCATTACTAGAAGTATATCTCGTGTGTACA
GCTCCCAGAAACGTATAACCCCTTCTGAAGAGGTTCTCAAACATCATGTT
GATGAAACCTCTATATGCAATGCAGAGGACACCGAGGGTGTCACAGAAAT
CGAAGACACCGCTGGAACTGCTGCTGGTGGTCGAACTACATTATCGAGTC
CTGTTAAATTCCAGAACAATGCGAGGCTTTCCCGTTTGCAGGGAACGAAG
AAGACGAAGGCTCAGGTGGCCATTGCGCAGGCAATGAAGCGGAATGGGGA
CAATATTGACGGACTGGTTCAGCAGTCAGCTAAGCGTAACAAAATCTTTG
CAAATTACGTTATGTTACAAAAGGAAAAGAATAACCATATGCTGTTCAGT
ATGGAGGGTACGGACGTTTTATTGCGGGAGAGGTACATTACACTTATCCA
AAAAAAGGTGCTGTTGGAGCTAGAAGAGGGACTAAGTGCTGCGAACGCGA
ATGACGTTGCTGATCCTGCAGCAACTGTTCAGCAACTAGCACTAATATCT
GCCCACAACGAGAGTTCTTTGAGCGCTGGACAGAGTGCTGCCGTTGCTCA
GGAGCAATGCCTGATTGGCAGCGCAAGTACTGGCCCAAGCAGTTGCGGCA
AAGCTAAGGAACTGGAGGATAACGTGGTAATACTAGAAGGCTCACGAGAG
AAAGATGACGATTTGTTTACTGGTCAATTCGCACCGCTCTCTACAGACAG
TTCTTCACGAAGTATTGTTCCAATCCGAAATCAGAACGCCACGAAGGATT
CTGATACGTCCCGTATTAGTGTCGCAGATTTGCTTTCAGGCTAA
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