Ggra10004.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10004.t1
Unique NameGgra10004.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:156984..157781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_09347T0
PFAMsBand_7
Max annot lvl33154|Opisthokonta
Evalue1.78e-58
EggNOG OGs2BVGR@1|root,2S28P@2759|Eukaryota,3AMEN@33154|Opisthokonta
Descriptionprohibitin homologues
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10004Ggra10004Gracilaria gracilis GNS1m malegenetig00000213_pilon 156984..157781 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10004.t1.start1Ggra10004.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 156984..156986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10004.t1.CDS1Ggra10004.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 156984..157781 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10004.t1.exon1Ggra10004.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 156984..157781 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10004.t1.stop1Ggra10004.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 157779..157781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10004.t1Ggra10004.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 156984..157781 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10004.t1 ID=Ggra10004.t1|Name=Ggra10004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MEPPAAAAMDDFSHTDTPFKPDNTMCMSTPLDIILPCLNCFVLPEKRQIV
QLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNP
VVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSA
DVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAML
KRQQAEALVQAREAIVRGAKHIALDAVQDMGTELQLSQEKKAELLSNLLI
VLVGDKDVTPTLQVA*
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spliced messenger RNA

>Ggra10004.t1 ID=Ggra10004.t1|Name=Ggra10004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000213_pilon:156984..157781+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCGCCCGCCGCCGCCGCCATGGACGACTTTTCCCATACTGACAC
CCCGTTCAAACCCGACAACACGATGTGCATGTCCACCCCGCTCGACATCA
TCCTGCCCTGTCTCAACTGCTTCGTGCTGCCGGAAAAACGTCAAATCGTC
CAACTCTTCTTCGGAAAGTATCACGGTACCATCACCGAGCCCGGCTGCTA
CTGCCGAACCGGCCTGGGCATGGAGCTACGCCGCGTCGACACCGACCTTA
ACACCTTCGACATGGCCAACACAAAGGTGCTCGACGCGCGCGGAAACCCC
GTCGTCATCTCCGGTGTGGTCACCTACTTCATCGAAGATACCAGAAAGGC
CGCCATCGACGTCCGAGACCCTCACCGCTTCGTGCACGACCAGGCGCCCG
CTGTGTTGAAACGCGTCGTCTCACAGTTTCCGTACGAATCTTCCTCCGCC
GATGTGCCTAGCTTACGCTCCGAAACCACCGATGTGTCCAACCGCATGCG
CGACGTGCTGCAGACCAAGTGTGCCGTGGCGGGCGTCAAGATCGTCACCT
TTAGCATCAACGAGCTTTCTTACGCGCCGGAGATTGCGCAGGCCATGCTC
AAGAGACAGCAGGCGGAGGCGTTGGTGCAGGCGAGAGAAGCGATTGTGCG
AGGAGCCAAGCATATTGCGCTGGATGCCGTGCAGGATATGGGAACAGAGC
TGCAGCTTTCGCAGGAGAAGAAGGCTGAATTGTTGAGCAATTTGCTCATT
GTGTTGGTGGGTGATAAGGATGTTACGCCCACATTACAGGTTGCTTGA
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protein sequence of Ggra10004.t1

>Ggra10004.t1 ID=Ggra10004.t1|Name=Ggra10004.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MEPPAAAAMDDFSHTDTPFKPDNTMCMSTPLDIILPCLNCFVLPEKRQIV
QLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNP
VVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSA
DVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAML
KRQQAEALVQAREAIVRGAKHIALDAVQDMGTELQLSQEKKAELLSNLLI
VLVGDKDVTPTLQVA*
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mRNA from alignment at tig00000213_pilon:156984..157781+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10004.t1 ID=Ggra10004.t1|Name=Ggra10004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000213_pilon:156984..157781+ (Gracilaria gracilis GNS1m male)
ATGGAACCGCCCGCCGCCGCCGCCATGGACGACTTTTCCCATACTGACAC
CCCGTTCAAACCCGACAACACGATGTGCATGTCCACCCCGCTCGACATCA
TCCTGCCCTGTCTCAACTGCTTCGTGCTGCCGGAAAAACGTCAAATCGTC
CAACTCTTCTTCGGAAAGTATCACGGTACCATCACCGAGCCCGGCTGCTA
CTGCCGAACCGGCCTGGGCATGGAGCTACGCCGCGTCGACACCGACCTTA
ACACCTTCGACATGGCCAACACAAAGGTGCTCGACGCGCGCGGAAACCCC
GTCGTCATCTCCGGTGTGGTCACCTACTTCATCGAAGATACCAGAAAGGC
CGCCATCGACGTCCGAGACCCTCACCGCTTCGTGCACGACCAGGCGCCCG
CTGTGTTGAAACGCGTCGTCTCACAGTTTCCGTACGAATCTTCCTCCGCC
GATGTGCCTAGCTTACGCTCCGAAACCACCGATGTGTCCAACCGCATGCG
CGACGTGCTGCAGACCAAGTGTGCCGTGGCGGGCGTCAAGATCGTCACCT
TTAGCATCAACGAGCTTTCTTACGCGCCGGAGATTGCGCAGGCCATGCTC
AAGAGACAGCAGGCGGAGGCGTTGGTGCAGGCGAGAGAAGCGATTGTGCG
AGGAGCCAAGCATATTGCGCTGGATGCCGTGCAGGATATGGGAACAGAGC
TGCAGCTTTCGCAGGAGAAGAAGGCTGAATTGTTGAGCAATTTGCTCATT
GTGTTGGTGGGTGATAAGGATGTTACGCCCACATTACAGGTTGCTTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:156984..157781+

>Ggra10004.t1 ID=Ggra10004.t1|Name=Ggra10004.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000213_pilon:156984..157781+ (Gracilaria gracilis GNS1m male)
ATGGAACCGCCCGCCGCCGCCGCCATGGACGACTTTTCCCATACTGACAC
CCCGTTCAAACCCGACAACACGATGTGCATGTCCACCCCGCTCGACATCA
TCCTGCCCTGTCTCAACTGCTTCGTGCTGCCGGAAAAACGTCAAATCGTC
CAACTCTTCTTCGGAAAGTATCACGGTACCATCACCGAGCCCGGCTGCTA
CTGCCGAACCGGCCTGGGCATGGAGCTACGCCGCGTCGACACCGACCTTA
ACACCTTCGACATGGCCAACACAAAGGTGCTCGACGCGCGCGGAAACCCC
GTCGTCATCTCCGGTGTGGTCACCTACTTCATCGAAGATACCAGAAAGGC
CGCCATCGACGTCCGAGACCCTCACCGCTTCGTGCACGACCAGGCGCCCG
CTGTGTTGAAACGCGTCGTCTCACAGTTTCCGTACGAATCTTCCTCCGCC
GATGTGCCTAGCTTACGCTCCGAAACCACCGATGTGTCCAACCGCATGCG
CGACGTGCTGCAGACCAAGTGTGCCGTGGCGGGCGTCAAGATCGTCACCT
TTAGCATCAACGAGCTTTCTTACGCGCCGGAGATTGCGCAGGCCATGCTC
AAGAGACAGCAGGCGGAGGCGTTGGTGCAGGCGAGAGAAGCGATTGTGCG
AGGAGCCAAGCATATTGCGCTGGATGCCGTGCAGGATATGGGAACAGAGC
TGCAGCTTTCGCAGGAGAAGAAGGCTGAATTGTTGAGCAATTTGCTCATT
GTGTTGGTGGGTGATAAGGATGTTACGCCCACATTACAGGTTGCTTGA
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