Ggra10001.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10001.t1
Unique NameGgra10001.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:150611..151431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10001Ggra10001Gracilaria gracilis GNS1m malegenetig00000213_pilon 150611..151431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10001.t1Ggra10001.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 150611..151431 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10001.t1.stop1Ggra10001.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 150611..150613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10001.t1.CDS1Ggra10001.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 150611..150754 -
Ggra10001.t1.CDS2Ggra10001.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 150850..151077 -
Ggra10001.t1.CDS3Ggra10001.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000213_pilon 151196..151306 -
Ggra10001.t1.CDS4Ggra10001.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000213_pilon 151390..151431 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10001.t1.exon1Ggra10001.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 150611..150754 -
Ggra10001.t1.exon2Ggra10001.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 150850..151077 -
Ggra10001.t1.exon3Ggra10001.t1.exon3Gracilaria gracilis GNS1m maleexontig00000213_pilon 151196..151306 -
Ggra10001.t1.exon4Ggra10001.t1.exon4Gracilaria gracilis GNS1m maleexontig00000213_pilon 151390..151431 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10001.t1.intron1Ggra10001.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 150755..150849 -
Ggra10001.t1.intron2Ggra10001.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000213_pilon 151078..151195 -
Ggra10001.t1.intron3Ggra10001.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000213_pilon 151307..151389 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10001.t1.start1Ggra10001.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 151429..151431 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10001.t1 ID=Ggra10001.t1|Name=Ggra10001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=175bp
MISKERLRHNNHSMHLLLYLGLGPTLRPPANKSHSLACGWKVESYSLDAS
SMAVSNIHGRKLFKKGLARFGIESFQSSLVDRVDLRFRLVFEPSGQMGDL
QSIHWAFDRSEEIESSWMPFHFNRMEWNRRPSFLADEFNDTSVNPTSIFS
AGSIMCAENHMYLPHKEQVFMSHT*
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spliced messenger RNA

>Ggra10001.t1 ID=Ggra10001.t1|Name=Ggra10001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000213_pilon:150611..151431- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAGTAAGGAGCGATTGCGCCACAACAACCATTCTATGCATTTGTT
GCTTTACCTCGGGCTGGGACCTACCCTGAGACCGCCAGCCAACAAGTCAC
ACAGCTTAGCTTGTGGGTGGAAGGTAGAAAGCTACTCCTTGGATGCTTCA
AGTATGGCCGTTTCGAACATTCATGGCAGGAAGCTGTTTAAAAAGGGTCT
GGCCCGGTTTGGAATCGAATCCTTTCAATCATCTCTGGTTGATCGTGTTG
ATTTAAGATTTCGATTAGTCTTCGAACCATCAGGACAAATGGGTGACCTC
CAATCAATCCATTGGGCATTCGACAGAAGTGAAGAAATAGAATCTTCGTG
GATGCCCTTCCACTTTAATCGAATGGAATGGAACAGACGCCCCTCATTTC
TGGCCGATGAGTTCAATGATACCTCTGTCAATCCAACCAGCATATTCAGT
GCAGGATCGATCATGTGTGCTGAAAACCACATGTATTTACCACATAAGGA
GCAGGTCTTCATGAGTCACACTTGA
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protein sequence of Ggra10001.t1

>Ggra10001.t1 ID=Ggra10001.t1|Name=Ggra10001.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=175bp
MISKERLRHNNHSMHLLLYLGLGPTLRPPANKSHSLACGWKVESYSLDAS
SMAVSNIHGRKLFKKGLARFGIESFQSSLVDRVDLRFRLVFEPSGQMGDL
QSIHWAFDRSEEIESSWMPFHFNRMEWNRRPSFLADEFNDTSVNPTSIFS
AGSIMCAENHMYLPHKEQVFMSHT*
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mRNA from alignment at tig00000213_pilon:150611..151431-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10001.t1 ID=Ggra10001.t1|Name=Ggra10001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=821bp|location=Sequence derived from alignment at tig00000213_pilon:150611..151431- (Gracilaria gracilis GNS1m male)
ATGATTAGTAAGGAGCGATTGCGCCACAACAACCATTCTATGGTAAGAAA
TCAATGTCTGGATACACCCGTAACCACATCTTCTGTTGTACATATTGACC
CTAGGCTCTCATGTTTGGAATAAAGCATTTGTTGCTTTACCTCGGGCTGG
GACCTACCCTGAGACCGCCAGCCAACAAGTCACACAGCTTAGCTTGTGGG
TGGAAGGTAGAAAGCTACTCCTTGGATGCTTCAAGTGTTCGTACCTCTTT
CGCTGTGATGGGCACAACAATTATTCTACCCGTGTACTGTATCTTTCCAT
TTTTGCATGTCCGATTCCCTGTGAAGTTGACTCGCTTGCTTCCTTTAGTC
ACAGATGGCCGTTTCGAACATTCATGGCAGGAAGCTGTTTAAAAAGGGTC
TGGCCCGGTTTGGAATCGAATCCTTTCAATCATCTCTGGTTGATCGTGTT
GATTTAAGATTTCGATTAGTCTTCGAACCATCAGGACAAATGGGTGACCT
CCAATCAATCCATTGGGCATTCGACAGAAGTGAAGAAATAGAATCTTCGT
GGATGCCCTTCCACTTTAATCGAATGGAATGGGTGTCTTCTGGGCGAATC
AACTTTGGGCAAGGGGGGGAAAAGGGGGAGATGGGAACACGAGTTTTCTC
ATCATTGTTTTCGATATATGTCTAAAGAACAGACGCCCCTCATTTCTGGC
CGATGAGTTCAATGATACCTCTGTCAATCCAACCAGCATATTCAGTGCAG
GATCGATCATGTGTGCTGAAAACCACATGTATTTACCACATAAGGAGCAG
GTCTTCATGAGTCACACTTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:150611..151431-

>Ggra10001.t1 ID=Ggra10001.t1|Name=Ggra10001.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00000213_pilon:150611..151431- (Gracilaria gracilis GNS1m male)
ATGATTAGTAAGGAGCGATTGCGCCACAACAACCATTCTATGCATTTGTT
GCTTTACCTCGGGCTGGGACCTACCCTGAGACCGCCAGCCAACAAGTCAC
ACAGCTTAGCTTGTGGGTGGAAGGTAGAAAGCTACTCCTTGGATGCTTCA
AGTATGGCCGTTTCGAACATTCATGGCAGGAAGCTGTTTAAAAAGGGTCT
GGCCCGGTTTGGAATCGAATCCTTTCAATCATCTCTGGTTGATCGTGTTG
ATTTAAGATTTCGATTAGTCTTCGAACCATCAGGACAAATGGGTGACCTC
CAATCAATCCATTGGGCATTCGACAGAAGTGAAGAAATAGAATCTTCGTG
GATGCCCTTCCACTTTAATCGAATGGAATGGAACAGACGCCCCTCATTTC
TGGCCGATGAGTTCAATGATACCTCTGTCAATCCAACCAGCATATTCAGT
GCAGGATCGATCATGTGTGCTGAAAACCACATGTATTTACCACATAAGGA
GCAGGTCTTCATGAGTCACACTTGA
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