Ggra1000.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1000.t1
Unique Name	Ggra1000.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:121890..122753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3641.EOY09134
PFAMs	Carb_anhydrase
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC02807
KEGG ko	ko:K01674
KEGG Reaction	R00132,R10092
KEGG Pathway	ko00910,map00910
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue	1.11e-36
EggNOG OGs	COG3338@1\|root,KOG0382@2759\|Eukaryota,37Q68@33090\|Viridiplantae,3GGWD@35493\|Streptophyta
EC	4.2.1.1
Description	carbonic anhydrase
COG category	P
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1000	Ggra1000	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 121890..122753 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1000.t1.start1	Ggra1000.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 121890..121892 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1000.t1.CDS1	Ggra1000.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 121890..122753 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1000.t1.exon1	Ggra1000.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 121890..122753 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1000.t1.stop1	Ggra1000.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 122751..122753 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1000.t1	Ggra1000.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 121890..122753 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:121890..122753+
coding sequence from alignment at tig00000027_pilon:121890..122753+

mRNA sequence

>Ggra1000.t1 ID=Ggra1000.t1|Name=Ggra1000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MVVQIWLSIAILFTSVILSRAFRLPIPLVSQQDESGRTFSYDPLACDGPG
NWSLIAPSYATCGAGTIQSPIDFPCPSESGDVPTVLDEDPVMSTTTARLN
LVGTTLNFELDCAEEGSCGKTEFNGTDFDLINIHFHSPSEHHVGGVTYPL
EAHMVHQSSEGALLVVSTMFSYGEEGDCITNAPSKKGRNKFLSFILSKLI
RGKRQFTINTGAFLEDGTSFCMYPGSLTTPPCTEGVTWILAESRQTVSPV
QVKVFQALVGALDSGNARPIQARNGRSVAFAPDVLGV*

spliced messenger RNA

>Ggra1000.t1 ID=Ggra1000.t1|Name=Ggra1000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000027_pilon:121890..122753+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTGCAAATCTGGCTCTCAATTGCAATTTTGTTCACATCTGTTAT
CCTTTCGAGGGCATTCAGACTCCCAATTCCTTTGGTTTCTCAACAAGATG
AATCAGGTCGAACATTTTCTTACGATCCGTTGGCCTGCGACGGACCGGGG
AACTGGTCTCTCATAGCACCTAGCTATGCGACATGTGGTGCTGGAACAAT
CCAGAGCCCGATCGACTTTCCTTGTCCCAGTGAATCTGGTGATGTGCCAA
CGGTCTTGGATGAGGATCCAGTTATGTCTACCACCACCGCCAGGCTAAAC
TTGGTGGGGACCACACTCAACTTTGAACTCGATTGCGCAGAGGAGGGAAG
CTGCGGCAAGACAGAGTTTAATGGCACCGATTTTGATTTGATCAACATCC
ATTTCCATTCACCTAGTGAACATCATGTGGGAGGAGTCACGTATCCGTTG
GAAGCACATATGGTGCATCAATCGTCCGAAGGCGCACTTCTCGTTGTTTC
GACAATGTTTTCATATGGGGAGGAGGGTGATTGCATTACGAACGCACCGT
CAAAGAAAGGACGTAACAAATTTTTGTCGTTTATTCTTTCCAAGTTGATC
CGGGGCAAGAGACAGTTTACAATCAATACCGGGGCATTTTTGGAAGATGG
AACGTCGTTCTGTATGTATCCAGGATCTCTTACCACACCTCCGTGTACTG
AGGGAGTGACATGGATCTTGGCAGAAAGTAGACAGACAGTGTCTCCAGTT
CAGGTCAAGGTATTTCAGGCATTAGTGGGTGCTTTAGACTCTGGTAATGC
CAGACCAATTCAGGCGAGAAACGGAAGGAGCGTTGCTTTTGCCCCCGATG
TCCTTGGAGTATGA

protein sequence of Ggra1000.t1

>Ggra1000.t1 ID=Ggra1000.t1|Name=Ggra1000.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MVVQIWLSIAILFTSVILSRAFRLPIPLVSQQDESGRTFSYDPLACDGPG
NWSLIAPSYATCGAGTIQSPIDFPCPSESGDVPTVLDEDPVMSTTTARLN
LVGTTLNFELDCAEEGSCGKTEFNGTDFDLINIHFHSPSEHHVGGVTYPL
EAHMVHQSSEGALLVVSTMFSYGEEGDCITNAPSKKGRNKFLSFILSKLI
RGKRQFTINTGAFLEDGTSFCMYPGSLTTPPCTEGVTWILAESRQTVSPV
QVKVFQALVGALDSGNARPIQARNGRSVAFAPDVLGV*

mRNA from alignment at tig00000027_pilon:121890..122753+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1000.t1 ID=Ggra1000.t1|Name=Ggra1000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000027_pilon:121890..122753+ (Gracilaria gracilis GNS1m male)
ATGGTGGTGCAAATCTGGCTCTCAATTGCAATTTTGTTCACATCTGTTAT
CCTTTCGAGGGCATTCAGACTCCCAATTCCTTTGGTTTCTCAACAAGATG
AATCAGGTCGAACATTTTCTTACGATCCGTTGGCCTGCGACGGACCGGGG
AACTGGTCTCTCATAGCACCTAGCTATGCGACATGTGGTGCTGGAACAAT
CCAGAGCCCGATCGACTTTCCTTGTCCCAGTGAATCTGGTGATGTGCCAA
CGGTCTTGGATGAGGATCCAGTTATGTCTACCACCACCGCCAGGCTAAAC
TTGGTGGGGACCACACTCAACTTTGAACTCGATTGCGCAGAGGAGGGAAG
CTGCGGCAAGACAGAGTTTAATGGCACCGATTTTGATTTGATCAACATCC
ATTTCCATTCACCTAGTGAACATCATGTGGGAGGAGTCACGTATCCGTTG
GAAGCACATATGGTGCATCAATCGTCCGAAGGCGCACTTCTCGTTGTTTC
GACAATGTTTTCATATGGGGAGGAGGGTGATTGCATTACGAACGCACCGT
CAAAGAAAGGACGTAACAAATTTTTGTCGTTTATTCTTTCCAAGTTGATC
CGGGGCAAGAGACAGTTTACAATCAATACCGGGGCATTTTTGGAAGATGG
AACGTCGTTCTGTATGTATCCAGGATCTCTTACCACACCTCCGTGTACTG
AGGGAGTGACATGGATCTTGGCAGAAAGTAGACAGACAGTGTCTCCAGTT
CAGGTCAAGGTATTTCAGGCATTAGTGGGTGCTTTAGACTCTGGTAATGC
CAGACCAATTCAGGCGAGAAACGGAAGGAGCGTTGCTTTTGCCCCCGATG
TCCTTGGAGTATGA

Coding sequence (CDS) from alignment at tig00000027_pilon:121890..122753+

>Ggra1000.t1 ID=Ggra1000.t1|Name=Ggra1000.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000027_pilon:121890..122753+ (Gracilaria gracilis GNS1m male)
ATGGTGGTGCAAATCTGGCTCTCAATTGCAATTTTGTTCACATCTGTTAT
CCTTTCGAGGGCATTCAGACTCCCAATTCCTTTGGTTTCTCAACAAGATG
AATCAGGTCGAACATTTTCTTACGATCCGTTGGCCTGCGACGGACCGGGG
AACTGGTCTCTCATAGCACCTAGCTATGCGACATGTGGTGCTGGAACAAT
CCAGAGCCCGATCGACTTTCCTTGTCCCAGTGAATCTGGTGATGTGCCAA
CGGTCTTGGATGAGGATCCAGTTATGTCTACCACCACCGCCAGGCTAAAC
TTGGTGGGGACCACACTCAACTTTGAACTCGATTGCGCAGAGGAGGGAAG
CTGCGGCAAGACAGAGTTTAATGGCACCGATTTTGATTTGATCAACATCC
ATTTCCATTCACCTAGTGAACATCATGTGGGAGGAGTCACGTATCCGTTG
GAAGCACATATGGTGCATCAATCGTCCGAAGGCGCACTTCTCGTTGTTTC
GACAATGTTTTCATATGGGGAGGAGGGTGATTGCATTACGAACGCACCGT
CAAAGAAAGGACGTAACAAATTTTTGTCGTTTATTCTTTCCAAGTTGATC
CGGGGCAAGAGACAGTTTACAATCAATACCGGGGCATTTTTGGAAGATGG
AACGTCGTTCTGTATGTATCCAGGATCTCTTACCACACCTCCGTGTACTG
AGGGAGTGACATGGATCTTGGCAGAAAGTAGACAGACAGTGTCTCCAGTT
CAGGTCAAGGTATTTCAGGCATTAGTGGGTGCTTTAGACTCTGGTAATGC
CAGACCAATTCAGGCGAGAAACGGAAGGAGCGTTGCTTTTGCCCCCGATG
TCCTTGGAGTATGA