Gchil7364.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7364.t1
Unique NameGchil7364.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:708001..708441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121374.KB891590_gene1719
Max annot lvl1236|Gammaproteobacteria
Evalue0.000233
EggNOG OGs29R72@1|root,30C8E@2|Bacteria,1RE0P@1224|Proteobacteria,1S53D@1236|Gammaproteobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7364Gchil7364Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 708001..708441 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7364.t1.stop1Gchil7364.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 708001..708003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7364.t1.CDS1Gchil7364.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 708001..708441 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7364.t1.exon1Gchil7364.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 708001..708441 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7364.t1.start1Gchil7364.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 708439..708441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7364.t1Gchil7364.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 708001..708441 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7364.t1 ID=Gchil7364.t1|Name=Gchil7364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=147bp
MLSDNQKEVIRNRVNAQTDIPFLRESTESALIDTVIDTLNPHIEPSLRQI
CPAPYVDCIKIALTESIPIEQRREQISIILQQQLVLPLASQLNGKLDVSL
IPESVEQKLLTVLSSKIIDEFVQWTVAEIDERMQTSLVQSRDAAAL*
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spliced messenger RNA

>Gchil7364.t1 ID=Gchil7364.t1|Name=Gchil7364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000007_pilon:708001..708441- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCTGACAACCAGAAAGAGGTCATCCGGAACCGCGTTAACGCTCA
GACCGACATCCCCTTTCTCCGCGAGTCCACTGAATCCGCTCTCATCGACA
CCGTCATCGACACCCTCAACCCGCACATCGAGCCCTCCCTCCGCCAAATC
TGCCCAGCCCCCTATGTCGATTGCATCAAGATCGCCCTCACGGAATCCAT
TCCAATTGAGCAGCGTCGTGAGCAAATCTCCATCATCCTGCAACAACAGC
TCGTTCTTCCGCTGGCGTCCCAGCTCAACGGCAAATTGGATGTCTCCTTG
ATCCCGGAGAGCGTCGAACAAAAGCTCTTGACCGTGCTTTCCAGCAAGAT
CATTGACGAATTTGTGCAGTGGACTGTTGCCGAGATTGACGAGCGCATGC
AAACTTCCTTGGTACAGAGTCGTGATGCCGCCGCTCTTTGA
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protein sequence of Gchil7364.t1

>Gchil7364.t1 ID=Gchil7364.t1|Name=Gchil7364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=147bp
MLSDNQKEVIRNRVNAQTDIPFLRESTESALIDTVIDTLNPHIEPSLRQI
CPAPYVDCIKIALTESIPIEQRREQISIILQQQLVLPLASQLNGKLDVSL
IPESVEQKLLTVLSSKIIDEFVQWTVAEIDERMQTSLVQSRDAAAL*
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mRNA from alignment at tig00000007_pilon:708001..708441-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7364.t1 ID=Gchil7364.t1|Name=Gchil7364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000007_pilon:708001..708441- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCTGACAACCAGAAAGAGGTCATCCGGAACCGCGTTAACGCTCA
GACCGACATCCCCTTTCTCCGCGAGTCCACTGAATCCGCTCTCATCGACA
CCGTCATCGACACCCTCAACCCGCACATCGAGCCCTCCCTCCGCCAAATC
TGCCCAGCCCCCTATGTCGATTGCATCAAGATCGCCCTCACGGAATCCAT
TCCAATTGAGCAGCGTCGTGAGCAAATCTCCATCATCCTGCAACAACAGC
TCGTTCTTCCGCTGGCGTCCCAGCTCAACGGCAAATTGGATGTCTCCTTG
ATCCCGGAGAGCGTCGAACAAAAGCTCTTGACCGTGCTTTCCAGCAAGAT
CATTGACGAATTTGTGCAGTGGACTGTTGCCGAGATTGACGAGCGCATGC
AAACTTCCTTGGTACAGAGTCGTGATGCCGCCGCTCTTTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:708001..708441-

>Gchil7364.t1 ID=Gchil7364.t1|Name=Gchil7364.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000007_pilon:708001..708441- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCTGACAACCAGAAAGAGGTCATCCGGAACCGCGTTAACGCTCA
GACCGACATCCCCTTTCTCCGCGAGTCCACTGAATCCGCTCTCATCGACA
CCGTCATCGACACCCTCAACCCGCACATCGAGCCCTCCCTCCGCCAAATC
TGCCCAGCCCCCTATGTCGATTGCATCAAGATCGCCCTCACGGAATCCAT
TCCAATTGAGCAGCGTCGTGAGCAAATCTCCATCATCCTGCAACAACAGC
TCGTTCTTCCGCTGGCGTCCCAGCTCAACGGCAAATTGGATGTCTCCTTG
ATCCCGGAGAGCGTCGAACAAAAGCTCTTGACCGTGCTTTCCAGCAAGAT
CATTGACGAATTTGTGCAGTGGACTGTTGCCGAGATTGACGAGCGCATGC
AAACTTCCTTGGTACAGAGTCGTGATGCCGCCGCTCTTTGA
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