Gchil6959.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6959.t1
Unique NameGchil6959.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:383720..384724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog266117.Rxyl_2848
PFAMsAA_kinase
Max annot lvl84995|Rubrobacteria
KEGG rclassRC00002,RC00043,RC02803,RC02804
KEGG koko:K00926
KEGG ReactionR00150,R01395
KEGG Pathwayko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200
Evalue2.3e-132
EggNOG OGsCOG0549@1|root,COG0549@2|Bacteria,2HWQ6@201174|Actinobacteria,4CQAT@84995|Rubrobacteria
EC2.7.2.2
DescriptionAmino acid kinase family
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6959Gchil6959Gracilaria chilensis NLEC103_M9 malegenetig00004398_pilon 383720..384724 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6959.t1.stop1Gchil6959.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004398_pilon 383720..383722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6959.t1.CDS1Gchil6959.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 383720..384724 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6959.t1.exon1Gchil6959.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 383720..384724 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6959.t1.start1Gchil6959.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004398_pilon 384722..384724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6959.t1Gchil6959.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004398_pilon 383720..384724 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6959.t1 ID=Gchil6959.t1|Name=Gchil6959.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=335bp
MTNRVAVVAVGGNALIKDKTKKTINDQYNAARETVAHIVDMIQDGWNVVL
THGNGPQVGFDMRRSELAAHELHPVPLDYCDADTQGAIGYMFQRAMHNEF
KRRGMDKAVATIVTLVRVNADDPALENPTKPIGSFLDERTARDRMKDGET
YTEDAGRGWRRVVPSPLPVEIVEADAIKTLIKAGVVVIATGGGGIPVVEN
ETGELDGIEAVIDKDFASALLAKVIGADLLLFSTGVPKVALNFNTSDELW
LDNMTASEARKYNKEGQFAPGSMKPKIEACIKFLENGGKQVLVTDPENIS
RALKGVTGTWIFPEQVARESMNTHDEKLVYHLSE*
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spliced messenger RNA

>Gchil6959.t1 ID=Gchil6959.t1|Name=Gchil6959.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00004398_pilon:383720..384724- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAACCGCGTGGCGGTCGTCGCAGTGGGTGGTAACGCCCTTATCAA
GGATAAGACTAAGAAGACCATCAACGACCAATACAACGCCGCCCGCGAAA
CTGTGGCTCACATCGTCGATATGATCCAAGACGGCTGGAATGTTGTACTA
ACTCATGGCAATGGACCTCAAGTGGGTTTTGACATGCGTCGTTCAGAACT
GGCGGCTCACGAATTGCATCCTGTGCCTCTAGACTATTGTGACGCTGACA
CGCAAGGCGCAATTGGCTATATGTTCCAACGTGCTATGCACAATGAGTTT
AAGCGCCGTGGCATGGACAAGGCAGTCGCGACGATCGTCACTCTAGTTCG
AGTCAACGCGGACGATCCTGCCCTTGAGAATCCCACCAAGCCAATCGGTT
CCTTTCTGGATGAGAGGACGGCCCGAGACCGCATGAAGGATGGTGAGACC
TATACTGAAGACGCTGGTCGTGGCTGGCGCCGAGTGGTGCCTTCTCCTTT
ACCTGTAGAGATAGTTGAAGCAGATGCGATCAAAACCTTGATCAAAGCGG
GAGTGGTGGTTATTGCTACGGGAGGAGGAGGTATTCCAGTCGTGGAAAAC
GAGACAGGAGAACTGGATGGCATCGAAGCCGTTATCGACAAAGACTTTGC
CTCTGCACTACTAGCGAAAGTCATTGGTGCGGACTTGCTGCTGTTCTCCA
CCGGCGTGCCAAAGGTTGCTCTAAATTTCAACACATCCGATGAGTTGTGG
CTCGACAATATGACCGCCTCGGAGGCTAGGAAGTACAACAAAGAGGGGCA
ATTTGCCCCTGGAAGCATGAAGCCCAAAATTGAGGCCTGCATCAAGTTCC
TTGAAAACGGCGGCAAGCAAGTTCTGGTCACCGACCCGGAAAATATATCC
CGAGCGCTCAAAGGCGTAACCGGGACCTGGATCTTCCCGGAACAAGTTGC
TCGTGAAAGTATGAACACACACGATGAAAAACTTGTGTACCATCTGTCTG
AATAG
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protein sequence of Gchil6959.t1

>Gchil6959.t1 ID=Gchil6959.t1|Name=Gchil6959.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=335bp
MTNRVAVVAVGGNALIKDKTKKTINDQYNAARETVAHIVDMIQDGWNVVL
THGNGPQVGFDMRRSELAAHELHPVPLDYCDADTQGAIGYMFQRAMHNEF
KRRGMDKAVATIVTLVRVNADDPALENPTKPIGSFLDERTARDRMKDGET
YTEDAGRGWRRVVPSPLPVEIVEADAIKTLIKAGVVVIATGGGGIPVVEN
ETGELDGIEAVIDKDFASALLAKVIGADLLLFSTGVPKVALNFNTSDELW
LDNMTASEARKYNKEGQFAPGSMKPKIEACIKFLENGGKQVLVTDPENIS
RALKGVTGTWIFPEQVARESMNTHDEKLVYHLSE*
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mRNA from alignment at tig00004398_pilon:383720..384724-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6959.t1 ID=Gchil6959.t1|Name=Gchil6959.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00004398_pilon:383720..384724- (Gracilaria chilensis NLEC103_M9 male)
ATGACTAACCGCGTGGCGGTCGTCGCAGTGGGTGGTAACGCCCTTATCAA
GGATAAGACTAAGAAGACCATCAACGACCAATACAACGCCGCCCGCGAAA
CTGTGGCTCACATCGTCGATATGATCCAAGACGGCTGGAATGTTGTACTA
ACTCATGGCAATGGACCTCAAGTGGGTTTTGACATGCGTCGTTCAGAACT
GGCGGCTCACGAATTGCATCCTGTGCCTCTAGACTATTGTGACGCTGACA
CGCAAGGCGCAATTGGCTATATGTTCCAACGTGCTATGCACAATGAGTTT
AAGCGCCGTGGCATGGACAAGGCAGTCGCGACGATCGTCACTCTAGTTCG
AGTCAACGCGGACGATCCTGCCCTTGAGAATCCCACCAAGCCAATCGGTT
CCTTTCTGGATGAGAGGACGGCCCGAGACCGCATGAAGGATGGTGAGACC
TATACTGAAGACGCTGGTCGTGGCTGGCGCCGAGTGGTGCCTTCTCCTTT
ACCTGTAGAGATAGTTGAAGCAGATGCGATCAAAACCTTGATCAAAGCGG
GAGTGGTGGTTATTGCTACGGGAGGAGGAGGTATTCCAGTCGTGGAAAAC
GAGACAGGAGAACTGGATGGCATCGAAGCCGTTATCGACAAAGACTTTGC
CTCTGCACTACTAGCGAAAGTCATTGGTGCGGACTTGCTGCTGTTCTCCA
CCGGCGTGCCAAAGGTTGCTCTAAATTTCAACACATCCGATGAGTTGTGG
CTCGACAATATGACCGCCTCGGAGGCTAGGAAGTACAACAAAGAGGGGCA
ATTTGCCCCTGGAAGCATGAAGCCCAAAATTGAGGCCTGCATCAAGTTCC
TTGAAAACGGCGGCAAGCAAGTTCTGGTCACCGACCCGGAAAATATATCC
CGAGCGCTCAAAGGCGTAACCGGGACCTGGATCTTCCCGGAACAAGTTGC
TCGTGAAAGTATGAACACACACGATGAAAAACTTGTGTACCATCTGTCTG
AATAG
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Coding sequence (CDS) from alignment at tig00004398_pilon:383720..384724-

>Gchil6959.t1 ID=Gchil6959.t1|Name=Gchil6959.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1005bp|location=Sequence derived from alignment at tig00004398_pilon:383720..384724- (Gracilaria chilensis NLEC103_M9 male)
ATGACTAACCGCGTGGCGGTCGTCGCAGTGGGTGGTAACGCCCTTATCAA
GGATAAGACTAAGAAGACCATCAACGACCAATACAACGCCGCCCGCGAAA
CTGTGGCTCACATCGTCGATATGATCCAAGACGGCTGGAATGTTGTACTA
ACTCATGGCAATGGACCTCAAGTGGGTTTTGACATGCGTCGTTCAGAACT
GGCGGCTCACGAATTGCATCCTGTGCCTCTAGACTATTGTGACGCTGACA
CGCAAGGCGCAATTGGCTATATGTTCCAACGTGCTATGCACAATGAGTTT
AAGCGCCGTGGCATGGACAAGGCAGTCGCGACGATCGTCACTCTAGTTCG
AGTCAACGCGGACGATCCTGCCCTTGAGAATCCCACCAAGCCAATCGGTT
CCTTTCTGGATGAGAGGACGGCCCGAGACCGCATGAAGGATGGTGAGACC
TATACTGAAGACGCTGGTCGTGGCTGGCGCCGAGTGGTGCCTTCTCCTTT
ACCTGTAGAGATAGTTGAAGCAGATGCGATCAAAACCTTGATCAAAGCGG
GAGTGGTGGTTATTGCTACGGGAGGAGGAGGTATTCCAGTCGTGGAAAAC
GAGACAGGAGAACTGGATGGCATCGAAGCCGTTATCGACAAAGACTTTGC
CTCTGCACTACTAGCGAAAGTCATTGGTGCGGACTTGCTGCTGTTCTCCA
CCGGCGTGCCAAAGGTTGCTCTAAATTTCAACACATCCGATGAGTTGTGG
CTCGACAATATGACCGCCTCGGAGGCTAGGAAGTACAACAAAGAGGGGCA
ATTTGCCCCTGGAAGCATGAAGCCCAAAATTGAGGCCTGCATCAAGTTCC
TTGAAAACGGCGGCAAGCAAGTTCTGGTCACCGACCCGGAAAATATATCC
CGAGCGCTCAAAGGCGTAACCGGGACCTGGATCTTCCCGGAACAAGTTGC
TCGTGAAAGTATGAACACACACGATGAAAAACTTGTGTACCATCTGTCTG
AATAG
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