Gchil5060.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5060.t1
Unique NameGchil5060.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004393_piloncontigtig00004393_pilon:2484076..2484900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX49473
PFAMsCCB2_CCB4
Max annot lvl2759|Eukaryota
Evalue4.5e-08
EggNOG OGs2E9EW@1|root,2SFT0@2759|Eukaryota
DescriptionPfam:DUF2930
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5060Gchil5060Gracilaria chilensis NLEC103_M9 malegenetig00004393_pilon 2484076..2484900 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5060.t1.start1Gchil5060.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004393_pilon 2484076..2484078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5060.t1.CDS1Gchil5060.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004393_pilon 2484076..2484900 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5060.t1.exon1Gchil5060.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004393_pilon 2484076..2484900 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5060.t1.stop1Gchil5060.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004393_pilon 2484898..2484900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5060.t1Gchil5060.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004393_pilon 2484076..2484900 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5060.t1 ID=Gchil5060.t1|Name=Gchil5060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=275bp
MPAAPSRTPAFCPTPALPTRTVLRRASLTRRSAPRAKAPPPSAKPIFYKN
PSKAIEKGGGFYVPGLRGPRLRFAVASVVATLLTANHVVTAVAQPPHTLL
TSEALAAAAVLAVFVTALRDSKRPAPDRTSAPSPPAPVVAPAAPVPPQRT
GAESSVPTPPNSIWPIAVCTDLTPVTHVAHFTNGVLRSSTPNVASRVAPG
TAVDRVLNESRSIYISDSSTLPAHVTLPFLAEGVWSVFLVPNEGGVVAFA
KSGTDALSVDHRRWLAIFAKHYFL*
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spliced messenger RNA

>Gchil5060.t1 ID=Gchil5060.t1|Name=Gchil5060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00004393_pilon:2484076..2484900+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCGCCCCGTCCCGAACCCCGGCCTTCTGCCCAACCCCCGCGCT
CCCCACGCGCACCGTTTTGCGCCGCGCCTCCCTCACGCGTCGTTCCGCGC
CGCGCGCCAAAGCGCCGCCGCCCAGCGCAAAGCCCATCTTCTACAAAAAC
CCGTCCAAGGCCATCGAGAAGGGCGGCGGTTTCTACGTCCCGGGGCTGCG
CGGTCCCCGTCTTCGCTTTGCCGTCGCCTCCGTTGTAGCCACCCTACTCA
CCGCCAACCACGTTGTCACCGCCGTCGCCCAACCGCCCCACACCCTGCTC
ACCTCAGAGGCGCTTGCCGCAGCCGCTGTCCTCGCCGTCTTTGTCACTGC
GCTGCGCGACTCCAAGCGTcccgcccccgaccgcacgtccgctccgtctc
cgcccgcccccgtcgttgcccccgccgcgcccgtgccgccgcaacgcacc
ggcgccgAGTCTTCGGTCCCCACGCCGCCCAACTCAATCTGGCCAATCGC
CGTATGCACCGATTTGACGCCCGTGACGCATGTGGCGCACTTTACAAACG
GTGTGTTACGCTCGAGTACTCCAAATGTTGCGTCGCGCGTGGCGCCGGGC
ACGGCAGTGGACAGGGTTTTGAACGAGTCGCGTTCCATTTATATCAGTGA
TAGCTCTACGTTGCCCGCCCATGTTACGCTGCCGTTCTTGGCGGAGGGGG
TGTGGAGCGTGTTTCTTGTGCCTAACGAGGGGGGCGTGGTGGCATTTGCC
AAAAGCGGTACCGACGCGCTTTCCGTCGATCATCGCCGCTGGCTTGCTAT
CTTTGCCAAACACTACTTTTTGTGA
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protein sequence of Gchil5060.t1

>Gchil5060.t1 ID=Gchil5060.t1|Name=Gchil5060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=275bp
MPAAPSRTPAFCPTPALPTRTVLRRASLTRRSAPRAKAPPPSAKPIFYKN
PSKAIEKGGGFYVPGLRGPRLRFAVASVVATLLTANHVVTAVAQPPHTLL
TSEALAAAAVLAVFVTALRDSKRPAPDRTSAPSPPAPVVAPAAPVPPQRT
GAESSVPTPPNSIWPIAVCTDLTPVTHVAHFTNGVLRSSTPNVASRVAPG
TAVDRVLNESRSIYISDSSTLPAHVTLPFLAEGVWSVFLVPNEGGVVAFA
KSGTDALSVDHRRWLAIFAKHYFL*
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mRNA from alignment at tig00004393_pilon:2484076..2484900+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5060.t1 ID=Gchil5060.t1|Name=Gchil5060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00004393_pilon:2484076..2484900+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCCGCCCCGTCCCGAACCCCGGCCTTCTGCCCAACCCCCGCGCT
CCCCACGCGCACCGTTTTGCGCCGCGCCTCCCTCACGCGTCGTTCCGCGC
CGCGCGCCAAAGCGCCGCCGCCCAGCGCAAAGCCCATCTTCTACAAAAAC
CCGTCCAAGGCCATCGAGAAGGGCGGCGGTTTCTACGTCCCGGGGCTGCG
CGGTCCCCGTCTTCGCTTTGCCGTCGCCTCCGTTGTAGCCACCCTACTCA
CCGCCAACCACGTTGTCACCGCCGTCGCCCAACCGCCCCACACCCTGCTC
ACCTCAGAGGCGCTTGCCGCAGCCGCTGTCCTCGCCGTCTTTGTCACTGC
GCTGCGCGACTCCAAGCGTcccgcccccgaccgcacgtccgctccgtctc
cgcccgcccccgtcgttgcccccgccgcgcccgtgccgccgcaacgcacc
ggcgccgAGTCTTCGGTCCCCACGCCGCCCAACTCAATCTGGCCAATCGC
CGTATGCACCGATTTGACGCCCGTGACGCATGTGGCGCACTTTACAAACG
GTGTGTTACGCTCGAGTACTCCAAATGTTGCGTCGCGCGTGGCGCCGGGC
ACGGCAGTGGACAGGGTTTTGAACGAGTCGCGTTCCATTTATATCAGTGA
TAGCTCTACGTTGCCCGCCCATGTTACGCTGCCGTTCTTGGCGGAGGGGG
TGTGGAGCGTGTTTCTTGTGCCTAACGAGGGGGGCGTGGTGGCATTTGCC
AAAAGCGGTACCGACGCGCTTTCCGTCGATCATCGCCGCTGGCTTGCTAT
CTTTGCCAAACACTACTTTTTGTGA
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Coding sequence (CDS) from alignment at tig00004393_pilon:2484076..2484900+

>Gchil5060.t1 ID=Gchil5060.t1|Name=Gchil5060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00004393_pilon:2484076..2484900+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCCGCCCCGTCCCGAACCCCGGCCTTCTGCCCAACCCCCGCGCT
CCCCACGCGCACCGTTTTGCGCCGCGCCTCCCTCACGCGTCGTTCCGCGC
CGCGCGCCAAAGCGCCGCCGCCCAGCGCAAAGCCCATCTTCTACAAAAAC
CCGTCCAAGGCCATCGAGAAGGGCGGCGGTTTCTACGTCCCGGGGCTGCG
CGGTCCCCGTCTTCGCTTTGCCGTCGCCTCCGTTGTAGCCACCCTACTCA
CCGCCAACCACGTTGTCACCGCCGTCGCCCAACCGCCCCACACCCTGCTC
ACCTCAGAGGCGCTTGCCGCAGCCGCTGTCCTCGCCGTCTTTGTCACTGC
GCTGCGCGACTCCAAGCGTcccgcccccgaccgcacgtccgctccgtctc
cgcccgcccccgtcgttgcccccgccgcgcccgtgccgccgcaacgcacc
ggcgccgAGTCTTCGGTCCCCACGCCGCCCAACTCAATCTGGCCAATCGC
CGTATGCACCGATTTGACGCCCGTGACGCATGTGGCGCACTTTACAAACG
GTGTGTTACGCTCGAGTACTCCAAATGTTGCGTCGCGCGTGGCGCCGGGC
ACGGCAGTGGACAGGGTTTTGAACGAGTCGCGTTCCATTTATATCAGTGA
TAGCTCTACGTTGCCCGCCCATGTTACGCTGCCGTTCTTGGCGGAGGGGG
TGTGGAGCGTGTTTCTTGTGCCTAACGAGGGGGGCGTGGTGGCATTTGCC
AAAAGCGGTACCGACGCGCTTTCCGTCGATCATCGCCGCTGGCTTGCTAT
CTTTGCCAAACACTACTTTTTGTGA
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