Gchil5060.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil5060.t1
Unique Name	Gchil5060.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	275

Homology

[Close]

BLAST of Gchil5060.t1 vs. uniprot
Match: A0A2V3J4S2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4S2_9FLOR)

HSP 1 Score: 231 bits (589), Expect = 4.420e-72
Identity = 129/234 (55.13%), Postives = 158/234 (67.52%), Query Frame = 0

Query:   40 PPSAKPIFYKNPSKAIEKGGGFYVPGLRGPRLRFAVASVVATLLTANHVVTAVAQPPHTLLTSEALAAAAVLAVFVTALRDSKRPAPDRTSAPSPPAPVVAPAAPVPPQRTGAESSVPTPPNSIWPIAVCTDLTPVTHVAHFTNGVLRSSTPNVASRVAPGTAVDRVLNESRSIYISDSSTLPAHVTLPFLAEGVWSVFLVPNEGGVVAFAKSGTDALSVDHRRWLAIFAKHYF 273
            PP  KP+FY+NPSKAIEKGGGFY+PGLRGPRLRF VASV  +LLT NH+ +    P  +LL SE +AA  +LAV VTA  DS R   D     SP    ++    V  +   +E  + T   S W +AVCTDLT VTH+A F NG L+S T NV +  APG AV+RVL E+RS+YISD+STLP++VT PFL +GVWSV+LVP    VV FAK G + LS+D RRWL +F   YF
Sbjct:   38 PPKTKPVFYRNPSKAIEKGGGFYIPGLRGPRLRFFVASVAGSLLTINHLASTATIP--SLLNSERIAAVGILAVLVTAFNDSLRSEDDAGPKISPDTETMSVTGLVE-EAIVSEEQLSTSEASTWAMAVCTDLTAVTHIAQFRNGFLQSKTMNVTAGSAPGEAVNRVLEEARSLYISDTSTLPSNVTFPFLQDGVWSVYLVPKGVDVVVFAKQGKEGLSIDSRRWLDVFVDQYF 268

[Close]

BLAST of Gchil5060.t1 vs. uniprot
Match: W7TJU1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJU1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.910e-6
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 0

Query:   44 KPIFYKNPSKAIEKGGGFYVPGLRGPRLRFAVASVVATLLTANHVVTAVAQPPHTLLTSEALAAAAVLAVFVTAL 118
            K  FYK PSKAIE GGGF++PGL G +LR A A +V  LL  N        P  + LTSEA+ A A + +   AL
Sbjct:   74 KSSFYKRPSKAIEMGGGFFIPGLEGYKLRLATALLVLLLLALNRYPGY--TPAASQLTSEAIGAGAAVILLAQAL 146

The following BLAST results are available for this feature:

BLAST of Gchil5060.t1 vs. uniprot

BLAST of Gchil5060.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J4S2_9FLOR	4.420e-72	55.13	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
W7TJU1_9STRA	2.910e-6	48.00	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4	PFAM	PF11152	CCB2_CCB4	coord: 183..270 e-value: 4.0E-6 score: 26.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..157
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 99..118
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..72
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 119..274
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 73..93
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 94..98

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004393_pilon	contig	tig00004393_pilon:2484076..2484900 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5060.t1	Gchil5060.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004393_pilon 2484076..2484900 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil5060.t1 ID=Gchil5060.t1|Name=Gchil5060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=275bp
MPAAPSRTPAFCPTPALPTRTVLRRASLTRRSAPRAKAPPPSAKPIFYKN
PSKAIEKGGGFYVPGLRGPRLRFAVASVVATLLTANHVVTAVAQPPHTLL
TSEALAAAAVLAVFVTALRDSKRPAPDRTSAPSPPAPVVAPAAPVPPQRT
GAESSVPTPPNSIWPIAVCTDLTPVTHVAHFTNGVLRSSTPNVASRVAPG
TAVDRVLNESRSIYISDSSTLPAHVTLPFLAEGVWSVFLVPNEGGVVAFA
KSGTDALSVDHRRWLAIFAKHYFL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021325	CCB2/CCB4