Gchil3948.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3948.t1
Unique Name	Gchil3948.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	619

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:1656504..1658360 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX50556
Preferred name	GSTCD
PFAMs	Methyltransf_31,Methyltransf_32
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue	6.05e-38
EggNOG OGs	COG0500@1\|root,2QUFE@2759\|Eukaryota
Description	Methyltransferase domain
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3948	Gchil3948	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 1656504..1658360 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3948.t1.start1	Gchil3948.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 1656504..1656506 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3948.t1.CDS1	Gchil3948.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 1656504..1658360 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3948.t1.exon1	Gchil3948.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 1656504..1658360 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3948.t1.stop1	Gchil3948.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 1658358..1658360 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3948.t1	Gchil3948.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 1656504..1658360 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:1656504..1658360+
coding sequence from alignment at tig00000010_pilon:1656504..1658360+

mRNA sequence

>Gchil3948.t1 ID=Gchil3948.t1|Name=Gchil3948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=619bp
MTCLNYPASPPLKPEGQDLLRLWNRVEGLDLKIAEQVTRRVLLVDAAHPV
YSLQPPSPPDCPRLLSFLKSSAFANLPLSIDPASRGQSNGPIPRYGVPPA
RAEKKRAQIRYLISVLSVIIDAHPVENPTIVDLCGGCGHVALVIAALLPN
SSVHIVDENNKALSIAADRARNAELNNVQTHHVSVQNLSLSFDIALALHA
CGGASDAAISAAVRSNAALVIVPCCVGAMVTLRGSTTGAAIARTQPVLDF
CGRSEVDWHEPRSALFRSLVKDGEYDCLAKAADFSEHGTDDWRKISKALL
EWDRLQWLRSGHYETRLMKMRPLSCTPKNDVLVAWPKKEGYVFPVEWSFD
ELSNGFVRDVVEGSVLNGLGPVEVREVERILRTLVCDENSNGIYRSAIGA
GKRRRKVFHAVAESMGLWHRSNGRGAQRTVVVSRSSHWPFFFYTYVGLGG
PMVESICADYVNEVPEKLLERRVLVRGRPHHITIISPTEANLIDSKYRDD
RDACLQFISQRLLGTSLLALGLGRVQCSSKLRNSVVGRGGEFQPEIVRKP
PSTFSEQEAYYVVIKWPEAQRLRNEMGLPQKDLHITLGFTEKDIHNCRKD
ARTLVCRKERDHIVNSFG*

spliced messenger RNA

>Gchil3948.t1 ID=Gchil3948.t1|Name=Gchil3948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at tig00000010_pilon:1656504..1658360+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTGTCTCAATTACCCAGCATCTCCTCCCCTCAAACCAGAAGGCCA
AGACTTACTTCGGCTTTGGAATCGCGTCGAAGGGCTTGACTTGAAAATTG
CTGAGCAGGTCACAAGACGCGTACTTCTGGTCGATGCCGCGCACCCCGTC
TACTCCCTCCAACCCCCAAGTCCACCCGACTGTCCCAGATTGCTTTCTTT
TTTGAAATCTTCTGCGTTTGCTAACCTACCACTGTCAATAGATCCCGCAT
CGAGAGGGCAATCGAATGGACCAATCCCGAGATACGGAGTTCCGCCTGCC
CGTGCCGAAAAGAAACGAGCACAGATTCGATATCTCATCTCAGTCCTTTC
TGTCATCATCGACGCTCATCCTGTGGAAAACCCCACCATCGTTGATCTTT
GTGGCGGCTGCGGTCATGTTGCTCTTGTCATCGCCGCTCTCCTGCCAAAC
TCCTCTGTACACATCGTGGACGAGAACAACAAGGCTCTTTCTATCGCCGC
GGATCGCGCCAGGAACGCAGAGTTGAACAATGTGCAAACGCACCACGTTT
CCGTTCAAAATCTTTCTCTTTCGTTTGACATAGCTTTGGCGTTACACGCA
TGCGGCGGCGCATCTGATGCCGCCATATCTGCCGCCGTCCGCTCTAACGC
CGCTCTTGTAATTGTTCCGTGCTGTGTAGGTGCGATGGTCACTTTGCGAG
GTTCAACAACCGGAGCTGCAATCGCTCGCACACAGCCGGTCCTGGACTTC
TGTGGTCGTTCTGAGGTAGATTGGCATGAGCCGCGGAGCGCCTTATTTAG
AAGCTTGGTCAAAGACGGCGAGTATGATTGTCTCGCAAAAGCGGCAGATT
TCAGTGAACACGGAACAGACGACTGGCGAAAGATTTCGAAAGCTTTGCTT
GAATGGGATCGCCTACAATGGCTCCGGTCGGGGCACTATGAGACACGGTT
AATGAAGATGAGGCCTTTATCTTGCACCCCCAAAAACGACGTTCTGGTAG
CATGGCCCAAGAAGGAGGGTTATGTGTTCCCTGTCGAGTGGTCGTTTGAT
GAGCTAAGCAATGGATTTGTCCGCGACGTTGTGGAAGGCAGTGTGTTGAA
TGGGCTCGGGCCTGTCGAGGTAAGGGAAGTGGAAAGAATACTGAGAACGT
TGGTATGTGACGAGAATTCCAACGGAATATATCGCTCAGCGATTGGTGCT
GGCAAGAGACGAAGAAAGGTGTTTCATGCTGTTGCTGAATCAATGGGTTT
ATGGCATCGAAGCAATGGGCGAGGAGCACAACGCACTGTGGTCGTATCGC
GTTCATCACACTGGCCGTTCTTCTTTTACACTTACGTAGGGCTCGGGGGT
CCAATGGTTGAATCCATCTGTGCCGATTATGTCAATGAAGTGCCTGAAAA
GTTACTAGAGCGCCGAGTTCTTGTTCGAGGGCGACCTCATCACATAACAA
TAATTTCTCCAACTGAGGCCAACCTCATAGATTCTAAATATAGAGACGAT
CGAGACGCATGCCTACAATTCATTTCCCAGCGATTGTTGGGAACCTCTTT
ACTAGCTTTGGGCCTTGGACGTGTTCAGTGTTCTTCCAAGTTGCGCAACT
CTGTGGTAGGGCGTGGGGGTGAATTTCAGCCCGAAATTGTCAGAAAACCT
CCATCGACTTTTTCCGAGCAAGAGGCATATTATGTCGTAATCAAATGGCC
AGAAGCGCAGAGATTAAGGAATGAAATGGGTTTACCCCAGAAAGATTTGC
ATATAACCTTGGGTTTCACCGAGAAGGATATTCATAATTGCCGAAAAGAT
GCGCGCACTTTAGTGTGTCGAAAGGAGCGAGACCATATTGTAAACTCGTT
CGGCTAA

protein sequence of Gchil3948.t1

>Gchil3948.t1 ID=Gchil3948.t1|Name=Gchil3948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=619bp
MTCLNYPASPPLKPEGQDLLRLWNRVEGLDLKIAEQVTRRVLLVDAAHPV
YSLQPPSPPDCPRLLSFLKSSAFANLPLSIDPASRGQSNGPIPRYGVPPA
RAEKKRAQIRYLISVLSVIIDAHPVENPTIVDLCGGCGHVALVIAALLPN
SSVHIVDENNKALSIAADRARNAELNNVQTHHVSVQNLSLSFDIALALHA
CGGASDAAISAAVRSNAALVIVPCCVGAMVTLRGSTTGAAIARTQPVLDF
CGRSEVDWHEPRSALFRSLVKDGEYDCLAKAADFSEHGTDDWRKISKALL
EWDRLQWLRSGHYETRLMKMRPLSCTPKNDVLVAWPKKEGYVFPVEWSFD
ELSNGFVRDVVEGSVLNGLGPVEVREVERILRTLVCDENSNGIYRSAIGA
GKRRRKVFHAVAESMGLWHRSNGRGAQRTVVVSRSSHWPFFFYTYVGLGG
PMVESICADYVNEVPEKLLERRVLVRGRPHHITIISPTEANLIDSKYRDD
RDACLQFISQRLLGTSLLALGLGRVQCSSKLRNSVVGRGGEFQPEIVRKP
PSTFSEQEAYYVVIKWPEAQRLRNEMGLPQKDLHITLGFTEKDIHNCRKD
ARTLVCRKERDHIVNSFG*

mRNA from alignment at tig00000010_pilon:1656504..1658360+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3948.t1 ID=Gchil3948.t1|Name=Gchil3948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at tig00000010_pilon:1656504..1658360+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTGTCTCAATTACCCAGCATCTCCTCCCCTCAAACCAGAAGGCCA
AGACTTACTTCGGCTTTGGAATCGCGTCGAAGGGCTTGACTTGAAAATTG
CTGAGCAGGTCACAAGACGCGTACTTCTGGTCGATGCCGCGCACCCCGTC
TACTCCCTCCAACCCCCAAGTCCACCCGACTGTCCCAGATTGCTTTCTTT
TTTGAAATCTTCTGCGTTTGCTAACCTACCACTGTCAATAGATCCCGCAT
CGAGAGGGCAATCGAATGGACCAATCCCGAGATACGGAGTTCCGCCTGCC
CGTGCCGAAAAGAAACGAGCACAGATTCGATATCTCATCTCAGTCCTTTC
TGTCATCATCGACGCTCATCCTGTGGAAAACCCCACCATCGTTGATCTTT
GTGGCGGCTGCGGTCATGTTGCTCTTGTCATCGCCGCTCTCCTGCCAAAC
TCCTCTGTACACATCGTGGACGAGAACAACAAGGCTCTTTCTATCGCCGC
GGATCGCGCCAGGAACGCAGAGTTGAACAATGTGCAAACGCACCACGTTT
CCGTTCAAAATCTTTCTCTTTCGTTTGACATAGCTTTGGCGTTACACGCA
TGCGGCGGCGCATCTGATGCCGCCATATCTGCCGCCGTCCGCTCTAACGC
CGCTCTTGTAATTGTTCCGTGCTGTGTAGGTGCGATGGTCACTTTGCGAG
GTTCAACAACCGGAGCTGCAATCGCTCGCACACAGCCGGTCCTGGACTTC
TGTGGTCGTTCTGAGGTAGATTGGCATGAGCCGCGGAGCGCCTTATTTAG
AAGCTTGGTCAAAGACGGCGAGTATGATTGTCTCGCAAAAGCGGCAGATT
TCAGTGAACACGGAACAGACGACTGGCGAAAGATTTCGAAAGCTTTGCTT
GAATGGGATCGCCTACAATGGCTCCGGTCGGGGCACTATGAGACACGGTT
AATGAAGATGAGGCCTTTATCTTGCACCCCCAAAAACGACGTTCTGGTAG
CATGGCCCAAGAAGGAGGGTTATGTGTTCCCTGTCGAGTGGTCGTTTGAT
GAGCTAAGCAATGGATTTGTCCGCGACGTTGTGGAAGGCAGTGTGTTGAA
TGGGCTCGGGCCTGTCGAGGTAAGGGAAGTGGAAAGAATACTGAGAACGT
TGGTATGTGACGAGAATTCCAACGGAATATATCGCTCAGCGATTGGTGCT
GGCAAGAGACGAAGAAAGGTGTTTCATGCTGTTGCTGAATCAATGGGTTT
ATGGCATCGAAGCAATGGGCGAGGAGCACAACGCACTGTGGTCGTATCGC
GTTCATCACACTGGCCGTTCTTCTTTTACACTTACGTAGGGCTCGGGGGT
CCAATGGTTGAATCCATCTGTGCCGATTATGTCAATGAAGTGCCTGAAAA
GTTACTAGAGCGCCGAGTTCTTGTTCGAGGGCGACCTCATCACATAACAA
TAATTTCTCCAACTGAGGCCAACCTCATAGATTCTAAATATAGAGACGAT
CGAGACGCATGCCTACAATTCATTTCCCAGCGATTGTTGGGAACCTCTTT
ACTAGCTTTGGGCCTTGGACGTGTTCAGTGTTCTTCCAAGTTGCGCAACT
CTGTGGTAGGGCGTGGGGGTGAATTTCAGCCCGAAATTGTCAGAAAACCT
CCATCGACTTTTTCCGAGCAAGAGGCATATTATGTCGTAATCAAATGGCC
AGAAGCGCAGAGATTAAGGAATGAAATGGGTTTACCCCAGAAAGATTTGC
ATATAACCTTGGGTTTCACCGAGAAGGATATTCATAATTGCCGAAAAGAT
GCGCGCACTTTAGTGTGTCGAAAGGAGCGAGACCATATTGTAAACTCGTT
CGGCTAA

Coding sequence (CDS) from alignment at tig00000010_pilon:1656504..1658360+

>Gchil3948.t1 ID=Gchil3948.t1|Name=Gchil3948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1857bp|location=Sequence derived from alignment at tig00000010_pilon:1656504..1658360+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTGTCTCAATTACCCAGCATCTCCTCCCCTCAAACCAGAAGGCCA
AGACTTACTTCGGCTTTGGAATCGCGTCGAAGGGCTTGACTTGAAAATTG
CTGAGCAGGTCACAAGACGCGTACTTCTGGTCGATGCCGCGCACCCCGTC
TACTCCCTCCAACCCCCAAGTCCACCCGACTGTCCCAGATTGCTTTCTTT
TTTGAAATCTTCTGCGTTTGCTAACCTACCACTGTCAATAGATCCCGCAT
CGAGAGGGCAATCGAATGGACCAATCCCGAGATACGGAGTTCCGCCTGCC
CGTGCCGAAAAGAAACGAGCACAGATTCGATATCTCATCTCAGTCCTTTC
TGTCATCATCGACGCTCATCCTGTGGAAAACCCCACCATCGTTGATCTTT
GTGGCGGCTGCGGTCATGTTGCTCTTGTCATCGCCGCTCTCCTGCCAAAC
TCCTCTGTACACATCGTGGACGAGAACAACAAGGCTCTTTCTATCGCCGC
GGATCGCGCCAGGAACGCAGAGTTGAACAATGTGCAAACGCACCACGTTT
CCGTTCAAAATCTTTCTCTTTCGTTTGACATAGCTTTGGCGTTACACGCA
TGCGGCGGCGCATCTGATGCCGCCATATCTGCCGCCGTCCGCTCTAACGC
CGCTCTTGTAATTGTTCCGTGCTGTGTAGGTGCGATGGTCACTTTGCGAG
GTTCAACAACCGGAGCTGCAATCGCTCGCACACAGCCGGTCCTGGACTTC
TGTGGTCGTTCTGAGGTAGATTGGCATGAGCCGCGGAGCGCCTTATTTAG
AAGCTTGGTCAAAGACGGCGAGTATGATTGTCTCGCAAAAGCGGCAGATT
TCAGTGAACACGGAACAGACGACTGGCGAAAGATTTCGAAAGCTTTGCTT
GAATGGGATCGCCTACAATGGCTCCGGTCGGGGCACTATGAGACACGGTT
AATGAAGATGAGGCCTTTATCTTGCACCCCCAAAAACGACGTTCTGGTAG
CATGGCCCAAGAAGGAGGGTTATGTGTTCCCTGTCGAGTGGTCGTTTGAT
GAGCTAAGCAATGGATTTGTCCGCGACGTTGTGGAAGGCAGTGTGTTGAA
TGGGCTCGGGCCTGTCGAGGTAAGGGAAGTGGAAAGAATACTGAGAACGT
TGGTATGTGACGAGAATTCCAACGGAATATATCGCTCAGCGATTGGTGCT
GGCAAGAGACGAAGAAAGGTGTTTCATGCTGTTGCTGAATCAATGGGTTT
ATGGCATCGAAGCAATGGGCGAGGAGCACAACGCACTGTGGTCGTATCGC
GTTCATCACACTGGCCGTTCTTCTTTTACACTTACGTAGGGCTCGGGGGT
CCAATGGTTGAATCCATCTGTGCCGATTATGTCAATGAAGTGCCTGAAAA
GTTACTAGAGCGCCGAGTTCTTGTTCGAGGGCGACCTCATCACATAACAA
TAATTTCTCCAACTGAGGCCAACCTCATAGATTCTAAATATAGAGACGAT
CGAGACGCATGCCTACAATTCATTTCCCAGCGATTGTTGGGAACCTCTTT
ACTAGCTTTGGGCCTTGGACGTGTTCAGTGTTCTTCCAAGTTGCGCAACT
CTGTGGTAGGGCGTGGGGGTGAATTTCAGCCCGAAATTGTCAGAAAACCT
CCATCGACTTTTTCCGAGCAAGAGGCATATTATGTCGTAATCAAATGGCC
AGAAGCGCAGAGATTAAGGAATGAAATGGGTTTACCCCAGAAAGATTTGC
ATATAACCTTGGGTTTCACCGAGAAGGATATTCATAATTGCCGAAAAGAT
GCGCGCACTTTAGTGTGTCGAAAGGAGCGAGACCATATTGTAAACTCGTT
CGGCTAA