Gchil3909.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3909.t1
Unique NameGchil3909.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length557
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1334451..1336440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3909Gchil3909Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1334451..1336440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3909.t1Gchil3909.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1334451..1336440 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3909.t1.stop1Gchil3909.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1334451..1334453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3909.t1.CDS1Gchil3909.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1334451..1334639 -
Gchil3909.t1.CDS2Gchil3909.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1334732..1334865 -
Gchil3909.t1.CDS3Gchil3909.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1334964..1335137 -
Gchil3909.t1.CDS4Gchil3909.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1335267..1336440 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3909.t1.exon1Gchil3909.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1334451..1334639 -
Gchil3909.t1.exon2Gchil3909.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1334732..1334865 -
Gchil3909.t1.exon3Gchil3909.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1334964..1335137 -
Gchil3909.t1.exon4Gchil3909.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1335267..1336440 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3909.t1.intron1Gchil3909.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1334640..1334731 -
Gchil3909.t1.intron2Gchil3909.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1334866..1334963 -
Gchil3909.t1.intron3Gchil3909.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1335138..1335266 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3909.t1.start1Gchil3909.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1336438..1336440 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3909.t1 ID=Gchil3909.t1|Name=Gchil3909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=557bp
MVLVITFFLLTYSASAGIIEDFQEPDCSNYDPEKRLEEAGENGNCLSALQ
DPLFRMEFDKCKNNTCFLITQEPPIINLNQEFFHAEENRHRMQLPFICRN
PRQVHRSLRGFGFEILKATSAGDDYCVWAGPLSSCTWNSLVHFAAMMGKN
EGYQFAVFGPMYETPQRKCYHFASASWWDDQMIILGRNVRENKTDTHPIW
QLIKPFESQTWIVVGSMITLFFFVCLLIVYRFRAFHRKSLVTAISAYFLF
MGHRDGAVATSRFAEEENFRQPSALKKDGSIGRESSSSLQSAFSTEDFSQ
QIETTAPELGKHILEKEAFLTKFSLSTSLFRISIVAFIAMFSLFYEVAVV
NFLFQQQNLELTKDIEHLTLKELHQYCVVRDTAAEAIWNFRVNPGGSKFD
DAEKSQIPWKRCQNGAECLSWILDDDNPVQFYITYELEGTHLIKSRASCE
SVTIFETKRSIHHFNSGWLFNEQVPTEKRRKLDRELMALKIDGTLSDLVG
DRAEVCDAIFMSSITYAIILLPVAFLVFPPLLCSAIVAICSRKISSVRNR
PHVTAA*
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spliced messenger RNA

>Gchil3909.t1 ID=Gchil3909.t1|Name=Gchil3909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00000010_pilon:1334451..1336440- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTGGTAATCACTTTTTTCCTGTTGACATATTCAGCATCAGCAGG
AATTATTGAAGATTTTCAAGAACCTGACTGCTCCAACTACGACCCCGAGA
AGAGGTTAGAGGAGGCGGGGGAAAACGGTAACTGTCTTTCTGCTCTTCAG
GATCCGTTGTTTCGCATGGAGTTCGACAAATGCAAAAATAATACATGCTT
CCTCATAACGCAAGAACCCCCAATAATCAATTTGAACCAGGAATTCTTTC
ATGCTGAAGAGAACCGGCATAGGATGCAGCTACCATTCATATGCAGGAAC
CCAAGACAAGTACATCGCTCTCTTCGTGGGTTTGGTTTCGAGATCTTGAA
AGCTACCAGCGCAGGGGATGATTATTGTGTCTGGGCTGGGCCATTGAGTT
CTTGTACATGGAACTCGCTCGTGCACTTCGCTGCTATGATGGGCAAAAAC
GAAGGGTATCAGTTTGCAGTGTTCGGTCCCATGTACGAAACACCCCAGAG
AAAGTGTTACCATTTTGCTAGTGCGTCGTGGTGGGATGATCAAATGATTA
TTCTCGGAAGGAATGTTCGCGAAAACAAAACAGATACACACCCGATTTGG
CAGCTCATCAAACCATTTGAGAGCCAGACATGGATTGTCGTGGGATCTAT
GATAACTTTGTTTTTCTTTGTTTGTCTGCTAATTGTGTATCGCTTTCGTG
CGTTTCATAGAAAGTCATTGGTCACAGCAATTAGTGCTTATTTTCTCTTC
ATGGGACATAGAGATGGGGCTGTGGCCACGAGTCGTTTTGCGGAAGAGGA
AAACTTCAGACAACCTTCAGCATTGAAAAAGGATGGTTCAATTGGGCGGG
AATCTTCGTCATCATTGCAAAGCGCTTTCAGTACTGAAGATTTTTCACAA
CAAATCGAGACAACTGCTCCTGAGCTGGGCAAACATATTCTGGAGAAAGA
AGCGTTTCTGACAAAATTCAGTCTTTCTACTTCTCTGTTCCGGATTTCAA
TAGTCGCGTTCATTGCGATGTTCTCGTTGTTCTACGAGGTGGCAGTCGTC
AACTTCCTCTTTCAACAACAAAATCTTGAGCTCACAAAAGATATTGAACA
TTTGACCTTGAAAGAGTTGCACCAATACTGTGTTGTGCGAGATACAGCCG
CCGAAGCTATATGGAACTTCAGAGTGAATCCGGGAGGCTCAAAATTTGAC
GACGCAGAAAAGTCTCAAATTCCATGGAAGCGTTGCCAAAATGGGGCAGA
ATGTCTCAGTTGGATTCTCGACGACGACAACCCTGTGCAGTTCTATATCA
CGTACGAATTGGAGGGCACACACTTGATAAAGTCCAGGGCAAGTTGTGAA
TCTGTAACGATATTTGAGACGAAAAGATCTATTCATCACTTCAACAGTGG
GTGGTTATTCAACGAACAAGTTCCAACAGAAAAACGCAGAAAATTGGACC
GCGAACTCATGGCGTTGAAGATAGATGGGACTTTGTCAGATTTGGTTGGC
GATCGTGCTGAAGTGTGCGATGCGATTTTTATGTCAAGCATCACTTACGC
GATCATTCTCCTTCCTGTCGCATTTCTTGTGTTTCCTCCCCTACTTTGTT
CTGCAATTGTAGCAATATGCTCGCGGAAGATCAGTTCCGTAAGAAATAGA
CCACATGTCACTGCTGCTTGA
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protein sequence of Gchil3909.t1

>Gchil3909.t1 ID=Gchil3909.t1|Name=Gchil3909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=557bp
MVLVITFFLLTYSASAGIIEDFQEPDCSNYDPEKRLEEAGENGNCLSALQ
DPLFRMEFDKCKNNTCFLITQEPPIINLNQEFFHAEENRHRMQLPFICRN
PRQVHRSLRGFGFEILKATSAGDDYCVWAGPLSSCTWNSLVHFAAMMGKN
EGYQFAVFGPMYETPQRKCYHFASASWWDDQMIILGRNVRENKTDTHPIW
QLIKPFESQTWIVVGSMITLFFFVCLLIVYRFRAFHRKSLVTAISAYFLF
MGHRDGAVATSRFAEEENFRQPSALKKDGSIGRESSSSLQSAFSTEDFSQ
QIETTAPELGKHILEKEAFLTKFSLSTSLFRISIVAFIAMFSLFYEVAVV
NFLFQQQNLELTKDIEHLTLKELHQYCVVRDTAAEAIWNFRVNPGGSKFD
DAEKSQIPWKRCQNGAECLSWILDDDNPVQFYITYELEGTHLIKSRASCE
SVTIFETKRSIHHFNSGWLFNEQVPTEKRRKLDRELMALKIDGTLSDLVG
DRAEVCDAIFMSSITYAIILLPVAFLVFPPLLCSAIVAICSRKISSVRNR
PHVTAA*
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mRNA from alignment at tig00000010_pilon:1334451..1336440-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3909.t1 ID=Gchil3909.t1|Name=Gchil3909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1990bp|location=Sequence derived from alignment at tig00000010_pilon:1334451..1336440- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTTGGTAATCACTTTTTTCCTGTTGACATATTCAGCATCAGCAGG
AATTATTGAAGATTTTCAAGAACCTGACTGCTCCAACTACGACCCCGAGA
AGAGGTTAGAGGAGGCGGGGGAAAACGGTAACTGTCTTTCTGCTCTTCAG
GATCCGTTGTTTCGCATGGAGTTCGACAAATGCAAAAATAATACATGCTT
CCTCATAACGCAAGAACCCCCAATAATCAATTTGAACCAGGAATTCTTTC
ATGCTGAAGAGAACCGGCATAGGATGCAGCTACCATTCATATGCAGGAAC
CCAAGACAAGTACATCGCTCTCTTCGTGGGTTTGGTTTCGAGATCTTGAA
AGCTACCAGCGCAGGGGATGATTATTGTGTCTGGGCTGGGCCATTGAGTT
CTTGTACATGGAACTCGCTCGTGCACTTCGCTGCTATGATGGGCAAAAAC
GAAGGGTATCAGTTTGCAGTGTTCGGTCCCATGTACGAAACACCCCAGAG
AAAGTGTTACCATTTTGCTAGTGCGTCGTGGTGGGATGATCAAATGATTA
TTCTCGGAAGGAATGTTCGCGAAAACAAAACAGATACACACCCGATTTGG
CAGCTCATCAAACCATTTGAGAGCCAGACATGGATTGTCGTGGGATCTAT
GATAACTTTGTTTTTCTTTGTTTGTCTGCTAATTGTGTATCGCTTTCGTG
CGTTTCATAGAAAGTCATTGGTCACAGCAATTAGTGCTTATTTTCTCTTC
ATGGGACATAGAGATGGGGCTGTGGCCACGAGTCGTTTTGCGGAAGAGGA
AAACTTCAGACAACCTTCAGCATTGAAAAAGGATGGTTCAATTGGGCGGG
AATCTTCGTCATCATTGCAAAGCGCTTTCAGTACTGAAGATTTTTCACAA
CAAATCGAGACAACTGCTCCTGAGCTGGGCAAACATATTCTGGAGAAAGA
AGCGTTTCTGACAAAATTCAGTCTTTCTACTTCTCTGTTCCGGATTTCAA
TAGTCGCGTTCATTGCGATGTTCTCGTTGTTCTACGAGGTGGCAGTCGTC
AACTTCCTCTTTCAACAACAAAATCTTGAGCTCACAAAAGATATTGAACA
TTTGACCTTGAAAGAGTTGCACCAATACTGTGTTGTGCGAGATACAGCCG
CCGAAGCTATATGGAACTTCAGAGGTGAGTGAAAGAAAATGTTATTTTTC
GGGAGTTCTTTGTTCGCTCGCTGTTACTCAATTCGGTTCTAACTGATGGA
CACTGGCCATTCTTTCCCACAAATAATCGACTTTGTGTTGAGCTGTCGTG
CAGTGAATCCGGGAGGCTCAAAATTTGACGACGCAGAAAAGTCTCAAATT
CCATGGAAGCGTTGCCAAAATGGGGCAGAATGTCTCAGTTGGATTCTCGA
CGACGACAACCCTGTGCAGTTCTATATCACGTACGAATTGGAGGGCACAC
ACTTGATAAAGTCCAGGGCAAGTTGTGGTAAGTGAAGCAATTTGTGATTA
CAGATGGCAATATCAGGTTTATCATGTGATCTGTTCTAACTATCTTTTAC
TTTTTGGTTGTTGTATACGCGCCAGAATCTGTAACGATATTTGAGACGAA
AAGATCTATTCATCACTTCAACAGTGGGTGGTTATTCAACGAACAAGTTC
CAACAGAAAAACGCAGAAAATTGGACCGCGAACTCATGGCGTTGAAGATA
GATGGGACTGTACGTGACTCGAAAGCAGAGTGCAATTGCAGTGATATTGA
GATTATCAGATACTAATCAGTTTTTGTTTTTTTGTGTGTCTTTTTCGGTA
GTTGTCAGATTTGGTTGGCGATCGTGCTGAAGTGTGCGATGCGATTTTTA
TGTCAAGCATCACTTACGCGATCATTCTCCTTCCTGTCGCATTTCTTGTG
TTTCCTCCCCTACTTTGTTCTGCAATTGTAGCAATATGCTCGCGGAAGAT
CAGTTCCGTAAGAAATAGACCACATGTCACTGCTGCTTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1334451..1336440-

>Gchil3909.t1 ID=Gchil3909.t1|Name=Gchil3909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1671bp|location=Sequence derived from alignment at tig00000010_pilon:1334451..1336440- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTTGGTAATCACTTTTTTCCTGTTGACATATTCAGCATCAGCAGG
AATTATTGAAGATTTTCAAGAACCTGACTGCTCCAACTACGACCCCGAGA
AGAGGTTAGAGGAGGCGGGGGAAAACGGTAACTGTCTTTCTGCTCTTCAG
GATCCGTTGTTTCGCATGGAGTTCGACAAATGCAAAAATAATACATGCTT
CCTCATAACGCAAGAACCCCCAATAATCAATTTGAACCAGGAATTCTTTC
ATGCTGAAGAGAACCGGCATAGGATGCAGCTACCATTCATATGCAGGAAC
CCAAGACAAGTACATCGCTCTCTTCGTGGGTTTGGTTTCGAGATCTTGAA
AGCTACCAGCGCAGGGGATGATTATTGTGTCTGGGCTGGGCCATTGAGTT
CTTGTACATGGAACTCGCTCGTGCACTTCGCTGCTATGATGGGCAAAAAC
GAAGGGTATCAGTTTGCAGTGTTCGGTCCCATGTACGAAACACCCCAGAG
AAAGTGTTACCATTTTGCTAGTGCGTCGTGGTGGGATGATCAAATGATTA
TTCTCGGAAGGAATGTTCGCGAAAACAAAACAGATACACACCCGATTTGG
CAGCTCATCAAACCATTTGAGAGCCAGACATGGATTGTCGTGGGATCTAT
GATAACTTTGTTTTTCTTTGTTTGTCTGCTAATTGTGTATCGCTTTCGTG
CGTTTCATAGAAAGTCATTGGTCACAGCAATTAGTGCTTATTTTCTCTTC
ATGGGACATAGAGATGGGGCTGTGGCCACGAGTCGTTTTGCGGAAGAGGA
AAACTTCAGACAACCTTCAGCATTGAAAAAGGATGGTTCAATTGGGCGGG
AATCTTCGTCATCATTGCAAAGCGCTTTCAGTACTGAAGATTTTTCACAA
CAAATCGAGACAACTGCTCCTGAGCTGGGCAAACATATTCTGGAGAAAGA
AGCGTTTCTGACAAAATTCAGTCTTTCTACTTCTCTGTTCCGGATTTCAA
TAGTCGCGTTCATTGCGATGTTCTCGTTGTTCTACGAGGTGGCAGTCGTC
AACTTCCTCTTTCAACAACAAAATCTTGAGCTCACAAAAGATATTGAACA
TTTGACCTTGAAAGAGTTGCACCAATACTGTGTTGTGCGAGATACAGCCG
CCGAAGCTATATGGAACTTCAGAGTGAATCCGGGAGGCTCAAAATTTGAC
GACGCAGAAAAGTCTCAAATTCCATGGAAGCGTTGCCAAAATGGGGCAGA
ATGTCTCAGTTGGATTCTCGACGACGACAACCCTGTGCAGTTCTATATCA
CGTACGAATTGGAGGGCACACACTTGATAAAGTCCAGGGCAAGTTGTGAA
TCTGTAACGATATTTGAGACGAAAAGATCTATTCATCACTTCAACAGTGG
GTGGTTATTCAACGAACAAGTTCCAACAGAAAAACGCAGAAAATTGGACC
GCGAACTCATGGCGTTGAAGATAGATGGGACTTTGTCAGATTTGGTTGGC
GATCGTGCTGAAGTGTGCGATGCGATTTTTATGTCAAGCATCACTTACGC
GATCATTCTCCTTCCTGTCGCATTTCTTGTGTTTCCTCCCCTACTTTGTT
CTGCAATTGTAGCAATATGCTCGCGGAAGATCAGTTCCGTAAGAAATAGA
CCACATGTCACTGCTGCTTGA
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