Gchil6580.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6580.t1
Unique NameGchil6580.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length369
Homology
BLAST of Gchil6580.t1 vs. uniprot
Match: A0A2V3J003_9FLOR (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J003_9FLOR)

HSP 1 Score: 330 bits (846), Expect = 5.020e-109
Identity = 184/297 (61.95%), Postives = 220/297 (74.07%), Query Frame = 0
Query:   70 SPQVIINKEMTESKLKLLEQSPLRRLIPEADRKAAATELQAKRNMKRKSPQNDAALDSSKKTVKRKAVNGKDRAQQKSPQQSVSSHKRTASENVHDNHDAQKKTDARQNLDNLKLGVAKKKEARRMRWKVRKLRKNGKLAKPDRAVDPGVLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKDPVKLATRSKRILKSARRKQATLARQGLAHAFLELPR 366
            SPQ++IN E+TESKLKLLE+SPLRRLIPE DRKAAA +L A R                             R Q K+ QQ+ S+  +TA++    N  A+ +  AR++LD LKLG+ KKKEARRMRWKVR+LRK+GKL   D   DPGV+YL HIPHGF+EKE+ +YFSQFG VLRVRLSRSV+T RSRGYAF+EFA K+VA+IAADAMDGY+MH+QKLVA+FVP+EKVH +TFKGANR FR IPWS+IERR M+  AKDPVKLA RSK IL++ARR+Q  L  QGL H  LELPR
Sbjct:   40 SPQIVINPEITESKLKLLEKSPLRRLIPEKDRKAAAAQLIANR-----------------------------RNQSKTSQQTASAQPQTAAK-PKPNPPAKGRNGARKDLDKLKLGIVKKKEARRMRWKVRELRKDGKLPHNDSDTDPGVMYLAHIPHGFFEKEITAYFSQFGPVLRVRLSRSVKTARSRGYAFVEFADKQVAQIAADAMDGYLMHRQKLVAKFVPAEKVHPDTFKGANRNFRQIPWSRIERRAMIARAKDPVKLAARSKNILRAARRRQRVLVEQGLTHTLLELPR 306          
BLAST of Gchil6580.t1 vs. uniprot
Match: R7Q752_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q752_CHOCR)

HSP 1 Score: 199 bits (507), Expect = 3.390e-56
Identity = 124/295 (42.03%), Postives = 175/295 (59.32%), Query Frame = 0
Query:   70 SPQVIINKEMTESKLKLLEQSPLRRLIPEADRKAAATELQAKRNMKRKSPQNDAALDSSKKTVKRKAVNGKDRAQQKSPQQSVSSHKRTASENVHDNHDAQKKTDARQNLDNLKLGVAKKKEARRMRWKVRKLRKNGKLAKPDRAVDPGVLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKDPVKLATRSKRILKSARRKQATLARQGLAHAFLEL 364
            SP V++N+ MT+ KL LL +SPL  L+ E D+ AAA ++  +           A+  +    VKRK  N      +  P  S    K+             K  DA  +  +L   VA++KE R  + ++RKLRK+G   +     + GV+YLGHIPHGFYE+E+  YF+QFG V  VRLSRS +T RSRGYAFIEF   E+A+ AA++MDGY+MH QKLVA+ VP E++H ET KGA R F+ + +S + R  ++  ++DP+KLA RSK + K    K+A L + GL + F E+
Sbjct:  196 SPDVVLNRRMTKDKLSLLTRSPLSHLVSEEDKDAAAQQVYGQ----------GASFSTH---VKRKLQNAD--VDEIIPLDSSQPPKK-------------KSKDANADAKDLAELVARRKERRIEKRRLRKLRKSGAREEESTPTESGVMYLGHIPHGFYEEEIRGYFAQFGRVTAVRLSRSKKTARSRGYAFIEFEDTEIAQKAAESMDGYLMHGQKLVAKVVPPERLHPETMKGAERKFKKVKFSTVMRNGLIRRSRDPLKLAQRSKHVQKKLHGKKARLEKMGLKYQFPEI 462          
BLAST of Gchil6580.t1 vs. uniprot
Match: A0A836BMG7_9CHLO (RRM domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BMG7_9CHLO)

HSP 1 Score: 157 bits (396), Expect = 5.350e-43
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 0
Query:  219 VLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKDPVKLATRSKRILKSARRKQATLARQGLAHAF 361
            VLYLGH+PHGFYEKEM+ YFSQFG+V RVRLSRS RTG++RGYAF+EF H EVA +AA+AMDGY + KQ+L  + +P  KVH   F GANR F+ IPW ++ER    +  + P + A R  ++++  + + A +A  GL + +
Sbjct:   30 VLYLGHLPHGFYEKEMLGYFSQFGKVTRVRLSRSKRTGKARGYAFVEFMHPEVASVAAEAMDGYFLFKQRLSVKLLPPAKVHPLLFNGANRKFKVIPWRKVER-GRHDRERSPAEHAARIAKLIRRDKARAARIAEAGLEYEY 171          
BLAST of Gchil6580.t1 vs. uniprot
Match: A0A250XKQ7_9CHLO (RRM domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XKQ7_9CHLO)

HSP 1 Score: 153 bits (386), Expect = 2.330e-41
Identity = 71/157 (45.22%), Postives = 111/157 (70.70%), Query Frame = 0
Query:  210 KPDRAVDPGVLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKD--PVKLATRSKRILKSARRKQATLARQGLAHAFLEL 364
            +P  +    V+Y+GH+PHGFYEK+++ +FSQFG++ RVRLSRS ++GR++ YAF+EF + EVA++AA+AM+GY +  QKL  + +P +K+H E FKGANR F+++PWS++ERR    H K+  P +LA R  R +K  + +Q  +   G+ + +  L
Sbjct:   29 EPSSSEQSRVVYIGHLPHGFYEKQLLGFFSQFGKLTRVRLSRSKKSGRAKHYAFLEFQYPEVAQVAAEAMNGYFLFSQKLDVKLMPVDKIHPELFKGANRRFKNVPWSKLERRR---HDKELTPAELARRVSRAIKKDKERQKKILEAGIEYEYPSL 182          
BLAST of Gchil6580.t1 vs. uniprot
Match: A0A2P6TMU9_CHLSO (MKI67 FHA domain-interacting nucleolar phospho n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TMU9_CHLSO)

HSP 1 Score: 152 bits (385), Expect = 2.740e-41
Identity = 69/143 (48.25%), Postives = 107/143 (74.83%), Query Frame = 0
Query:  219 VLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKDPVKLATRSKRILKSARRKQATLARQGLAHAF 361
            V+YLGH+PHGFYEK++  YFSQFG+V +VRLSR+ ++G+S+GYAF+EF+  EVA+IAADAMDGY++  QKL +R +P+++VH + FKGANR F+ +PW +IER    N  +   +   R+++ ++   R+Q  +A+ G+ + +
Sbjct:   34 VVYLGHLPHGFYEKQLKEYFSQFGKVTKVRLSRNKKSGKSKGYAFLEFSSAEVAKIAADAMDGYMLFTQKLTSRVLPADEVHPDLFKGANRVFKQVPWQKIERERQ-NRDRTAAEAEKRARQAVERDERRQRRIAQAGIDYQY 175          
BLAST of Gchil6580.t1 vs. uniprot
Match: A0A1S8W0N7_9FUNG (RRM domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W0N7_9FUNG)

HSP 1 Score: 152 bits (383), Expect = 6.420e-39
Identity = 75/161 (46.58%), Postives = 110/161 (68.32%), Query Frame = 0
Query:  201 KLRKNGKLAKPDRAVDPGVLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKDPVKLATRSKRILKSARRKQATLARQGLAHAF 361
            KL+ + K    +   +PGV+YLGH+PHGFYE EMMSYFSQFGEV R+RLSR+ +TGRS+ YAFIEF   EVA+I +D M+ Y+M  Q +  + V +EK+H +TFKG NR F+ +PW++++R+   N  K   + +  +KR+ K+  +K+  L   G+ + F
Sbjct:  190 KLKNSTKKVNSNPKAEPGVVYLGHVPHGFYEAEMMSYFSQFGEVTRLRLSRNKKTGRSKHYAFIEFKDAEVAKIVSDTMNNYLMFNQIIKCKLVAAEKLHVDTFKGCNRKFKVVPWNKVQRQKQ-NKPKTLEQWSANTKRLEKNDVKKRKHLESLGIEYEF 349          
BLAST of Gchil6580.t1 vs. uniprot
Match: D8TQJ3_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQJ3_VOLCA)

HSP 1 Score: 145 bits (365), Expect = 1.960e-38
Identity = 64/139 (46.04%), Postives = 102/139 (73.38%), Query Frame = 0
Query:  219 VLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKDPVKLATRSKRILKSARRKQATLARQGL 357
            V+Y+GH+PHGF+EK+M+ YFSQFG+V R+RLSRS +TG ++GYAF+EF + EVA +AA+AMDGY + KQ+L  + +P  +VH + F+GANR F+ IPW ++ER+   +  + P + A R  ++++  +++Q  +   G+
Sbjct:   29 VVYVGHVPHGFFEKQMLGYFSQFGKVTRLRLSRSKKTGNAKGYAFLEFQYPEVARVAAEAMDGYFLFKQRLKCKLIPPSRVHPQLFQGANRRFKVIPWRRVERQRH-DRERTPTEHAQRVAKLVRKDKQRQKKIKEAGI 166          
BLAST of Gchil6580.t1 vs. uniprot
Match: A8J450_CHLRE (Predicted protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8J450_CHLRE)

HSP 1 Score: 144 bits (364), Expect = 2.440e-38
Identity = 73/155 (47.10%), Postives = 102/155 (65.81%), Query Frame = 0
Query:  212 DRAVDPGVLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKD--PVKLATRSKRILKSARRKQATLARQGLAHAFLEL 364
            D      V+Y+GHIPHGF+EK+M+ YFSQFG+V RVRLSRS RTG S+GYAFIEF H EVA +AA+AMDGY + KQ+L  + +P  +VH   F GANR F+ IP   +ER+    H K+  P + A R  ++++  + +Q  +   G+ + +  L
Sbjct:   18 DDTAQARVIYVGHIPHGFFEKQMLGYFSQFGKVTRVRLSRSKRTGNSKGYAFIEFQHPEVARVAAEAMDGYFIFKQRLSCKLMPPARVHPMLFNGANRKFKVIPRRTVERKR---HEKERTPKEQAARIAKLIRRDKLRQKKITEAGIEYEYAGL 169          
BLAST of Gchil6580.t1 vs. uniprot
Match: A0A383WD88_TETOB (RRM domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383WD88_TETOB)

HSP 1 Score: 142 bits (357), Expect = 3.850e-37
Identity = 67/150 (44.67%), Postives = 101/150 (67.33%), Query Frame = 0
Query:  214 AVDP--GVLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKDPVKLATRSKRILKSARRKQATLARQGLAHAF 361
            A DP   V+Y+GH+PHGFYE E++ +FSQFG+++RVRLSRS +T + + YAF+EF H +VA+IAA+ MDGY M KQKL  R +   +VH + FKGANR F+ +PW +IE   + N  + P + A R   +++  + +   +A  G+ + +
Sbjct:   29 AADPLTAVVYIGHLPHGFYEDELLGFFSQFGKLVRVRLSRSKKTAKPKHYAFLEFQHADVAQIAAETMDGYFMFKQKLSCRVLKQSEVHPQLFKGANRKFKKVPWKKIEAERV-NKDRTPEEAAARMAALIRKDKARAKRIAAAGIEYEY 177          
BLAST of Gchil6580.t1 vs. uniprot
Match: A0A7S0S0W1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S0W1_9CHLO)

HSP 1 Score: 142 bits (357), Expect = 4.580e-37
Identity = 67/145 (46.21%), Postives = 102/145 (70.34%), Query Frame = 0
Query:  219 VLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLSRSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVHAETFKGANRTFRHIPWSQIERRNMLNHAKD--PVKLATRSKRILKSARRKQATLARQGLAHAF 361
            V+Y+G++PHGFYEK+++ +FSQFG++ RVRLSR+ +TG+++ YAF+EF H EVA IAADAMDGY M  Q+L  + +  E +H   F GAN+ F+++PW +IER+    H K+  P + A R  R++K  R +Q  +A  G+ + +
Sbjct:   42 VVYIGNLPHGFYEKQLLGFFSQFGKLTRVRLSRNKKTGKAKHYAFLEFLHPEVARIAADAMDGYFMFSQRLTVKVMKQEAIHPLLFVGANKRFKNVPWRKIERQR---HDKERTPEEFAKRIARLVKKDRARQKKIAESGIEYEY 183          
The following BLAST results are available for this feature:
BLAST of Gchil6580.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J003_9FLOR5.020e-10961.95Putative RNA-binding protein n=1 Tax=Gracilariopsi... [more]
R7Q752_CHOCR3.390e-5642.03RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A836BMG7_9CHLO5.350e-4352.45RRM domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A250XKQ7_9CHLO2.330e-4145.22RRM domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A2P6TMU9_CHLSO2.740e-4148.25MKI67 FHA domain-interacting nucleolar phospho n=1... [more]
A0A1S8W0N7_9FUNG6.420e-3946.58RRM domain-containing protein n=1 Tax=Batrachochyt... [more]
D8TQJ3_VOLCA1.960e-3846.04RRM domain-containing protein n=1 Tax=Volvox carte... [more]
A8J450_CHLRE2.440e-3847.10Predicted protein n=2 Tax=Chlamydomonas TaxID=3052... [more]
A0A383WD88_TETOB3.850e-3744.67RRM domain-containing protein n=2 Tax=Scenedesmace... [more]
A0A7S0S0W1_9CHLO4.580e-3746.21Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 219..292
e-value: 1.5E-17
score: 74.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 220..289
e-value: 2.9E-14
score: 52.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 218..296
score: 16.363689
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 150..303
e-value: 1.6E-24
score: 88.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..181
NoneNo IPR availablePANTHERPTHR12311:SF8SUBFAMILY NOT NAMEDcoord: 106..354
NoneNo IPR availableCDDcd12307RRM_NIFK_likecoord: 219..292
e-value: 3.65548E-40
score: 134.624
IPR039119ABT1/Esf2PANTHERPTHR12311ACTIVATOR OF BASAL TRANSCRIPTION 1coord: 106..354
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 205..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:688349..689455 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6580.t1Gchil6580.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 688349..689455 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6580.t1 ID=Gchil6580.t1|Name=Gchil6580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MSTPNKSPRTTSISKKSPRSRQAPSAKPIAHSSKPSGPQLKKRSTQLAKQ
TSPKIMKKSTSPTDTSATASPQVIINKEMTESKLKLLEQSPLRRLIPEAD
RKAAATELQAKRNMKRKSPQNDAALDSSKKTVKRKAVNGKDRAQQKSPQQ
SVSSHKRTASENVHDNHDAQKKTDARQNLDNLKLGVAKKKEARRMRWKVR
KLRKNGKLAKPDRAVDPGVLYLGHIPHGFYEKEMMSYFSQFGEVLRVRLS
RSVRTGRSRGYAFIEFAHKEVAEIAADAMDGYIMHKQKLVARFVPSEKVH
AETFKGANRTFRHIPWSQIERRNMLNHAKDPVKLATRSKRILKSARRKQA
TLARQGLAHAFLELPRGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR039119ABT1/Esf2
IPR035979RBD_domain_sf