Gchil6535.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6535.t1
Unique NameGchil6535.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length386
Homology
BLAST of Gchil6535.t1 vs. uniprot
Match: A0A2V3J6Q3_9FLOR (Nucleoporin nup44 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q3_9FLOR)

HSP 1 Score: 397 bits (1019), Expect = 9.260e-136
Identity = 206/263 (78.33%), Postives = 226/263 (85.93%), Query Frame = 0
Query:  123 LFGASQPQMTQNQXXXXXXXXPLRLPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDMDEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIVELEASNIDSSGILTPTETERKKRLDTIARALAAPAEFKDKLSDLVEIAETTILNRQTQPAVEIRDPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIMAAALNR 385
            +FGASQPQ+ Q Q        PLRLPR+LT+VIE LNPLHPESKFH ALYN V PGDISRY R ++MDEKLWDEAV KNPDPSRLVPVQANLFDDLI+RSN Q KRI++HL+VLSKI+QLIKKIDG+V      KLAA RRRHRELARKLLRIAS VEL ASN DSSG+LTP ETERKKRLDTIARALAAPAEFKDKLSDLVE+AETTILNRQTQPAVEIRD  AA  IKQLL DQLQGIQHLSHVC+R DRD++IM ++L+R
Sbjct:    1 MFGASQPQIAQPQQ-------PLRLPRALTEVIEKLNPLHPESKFHAALYNNVQPGDISRYSRAANMDEKLWDEAVLKNPDPSRLVPVQANLFDDLIQRSNLQTKRIEDHLVVLSKIEQLIKKIDGDVDTEISTKLAACRRRHRELARKLLRIASSVELAASNTDSSGVLTPKETERKKRLDTIARALAAPAEFKDKLSDLVELAETTILNRQTQPAVEIRDGAAATAIKQLLGDQLQGIQHLSHVCERIDRDVNIMDSSLSR 256          
BLAST of Gchil6535.t1 vs. uniprot
Match: R7QP53_CHOCR (Nup54 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP53_CHOCR)

HSP 1 Score: 251 bits (642), Expect = 1.880e-78
Identity = 139/259 (53.67%), Postives = 184/259 (71.04%), Query Frame = 0
Query:  121 SSLFGASQPQMTQNQXXXXXXXXPLRLPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDMDEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIVELEASNIDSSGILTPTETERKKRLDTIARALAAPAEFKDKLSDLVEIAETTILNRQTQPAVEIRDPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIM 379
            +SLFG  Q Q     XXXXXXXX      +L ++I+ LNP+  ES  H ALYN VSP D+SRY RP+ M+E LWD AV  NPDPSR+VPVQAN FDDL+ RS  Q +RI EH  VLS+I++ + +++  V      +LA YRRRHRELARKLLR+AS+V++E +  D +  LT  E ER+K++  IARALA PAEFKDKL+DLVE+ E+ +L R+ +  VEIRD +AA  I+ LL +QL+GI+HL+ VC++  RD+ I+
Sbjct:    8 TSLFGVGQTQQQMXXXXXXXXXXXXXXXXALMELIDRLNPMRNESSMHAALYNVVSPSDVSRYGRPAAMNESLWDAAVANNPDPSRMVPVQANNFDDLLRRSEMQTQRIQEHGAVLSQIEEGLSQMESAVEGDVTTRLATYRRRHRELARKLLRLASVVDMETARGDRAT-LTVGEAERRKKVVAIARALAEPAEFKDKLADLVELGESHVLERRARKDVEIRDVRAAGAIRNLLGEQLKGIEHLAKVCEKAKRDLDIV 265          
BLAST of Gchil6535.t1 vs. uniprot
Match: A0A7S1TAT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TAT8_9RHOD)

HSP 1 Score: 160 bits (406), Expect = 2.200e-42
Identity = 87/235 (37.02%), Postives = 143/235 (60.85%), Query Frame = 0
Query:  147 LPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDMDEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIVELEASNIDSSGILTPTETERKKRLDTIARALAAPAEFKDKLSDLVEIAETTILNRQ--TQPAVEIRDPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIM 379
            LP SL  +IE  NP  P   F   LYN V P  +S Y+RPS++DE+LW +A + NPDP+RL+P+Q + FDDL  R + Q  RI +HL  LS I+  + K++ ++      K++ YRRR +EL+R+LL +   ++  A+   S   LT  E   K R++T+  +++ P   +++L DL +  E+ ++ R+  +   VE+ D ++A  +K  LS+QL+GI HL +  + ++RD+ I+
Sbjct:  105 LPPSLLSIIEAFNPSSPYYLFRHMLYNVVEPNALSNYQRPSNIDERLWLQAQQNNPDPTRLIPIQVSGFDDLAARISQQETRISQHLGALSTIESTLGKLEEDLKLVAGVKISEYRRRQQELSRRLLGLHLRLDRAAA---SGRNLTSEELMAKSRIETLVASVSGPDGLRERLLDLSDSVESKLVERRLSSNVQVEVVDARSATALKTHLSEQLRGISHLVNELNASERDMRII 336          
BLAST of Gchil6535.t1 vs. uniprot
Match: A0A5J4YRR7_PORPP (Nucleoporin nup44 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRR7_PORPP)

HSP 1 Score: 122 bits (307), Expect = 5.560e-27
Identity = 82/251 (32.67%), Postives = 122/251 (48.61%), Query Frame = 0
Query:  145 LRLPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDMDEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHR-ELARKLLRIASIVELEASNIDSSGILTPTETERKKRLDTIARALAAPAEFKDKLSDLVEIAETTILN-----------RQTQPAVEIRDPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIMAAAL 383
            L +P+S+  + ++ NP     +F   LYN V       Y RP+D DEKLW +AV+ NPD SR+VPVQ   FD L  R   Q  RI +H+  L KI   +  +   V      ++A  RRR R + +R L     I  L A N      L+  E   + RL +I R +  P    D L++L  IA     N           R  +  V+  D +A + +K  L+D+L+GI+ L    +   RD+++++AAL
Sbjct:  338 LYMPQSIQTIYDSFNPQSSYFRFRHMLYNVVEKSTAQFYTRPADCDEKLWQQAVQSNPDASRMVPVQVCGFDQLQMRVEQQDNRIKQHMAALGKISDNLGAVKEHVKQDASIRVAELRRRQRVQYSRLLAACCRIERLVAKNAP----LSSDEIALRNRLQSIKRQMDTPVRLVDHLAELELIANAGGWNSAENLQGGAAARGARSNVKALDKRALHGLKSYLADELRGIESLYDEMESNARDLNVLSAAL 584          
BLAST of Gchil6535.t1 vs. uniprot
Match: A0A1X2I6X7_9FUNG (Nucleoporin complex subunit 54-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I6X7_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 1.130e-20
Identity = 70/262 (26.72%), Postives = 131/262 (50.00%), Query Frame = 0
Query:  128 QPQMTQNQXXXXXXXXPLRLPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDMDEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIVELEASNIDSSGI-LTPTETERKKRLDTIARALAAPAEFKDKLSDLVEIAETTILNRQTQPAV-----EIRDPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIMAAAL 383
            QPQ +Q Q         L L ++  D      P  P  +F    YN V P ++  Y RP + DE+LW+EA +KNPDPS +VPV A  F+D+++R + Q ++ + H   L +I Q ++ +  +       +L  ++RRH +L ++++R+  +V++    I   G  L+  E   +K+ + ++   + P +   K+ +L    +     ++T+P+      E  +    N I ++L D+ QG+ H+  +  +   D+  + A L
Sbjct:  243 QPQSSQPQQPQYNVWQQLALIKANWD------PSSPLCQFRHYFYNMVPPNEVQLYIRPPNQDEQLWNEAQQKNPDPSCMVPVLAVGFEDVLKRMDIQDRQSELHKEKLEEISQRLETVRRKYELGSRARLEEHKRRHADLTQRIIRLLRVVQV----IRYKGFPLSQQEELCQKQFEELSTQASNPEQLYTKMLELWSQLQAI---KKTRPSSDNGHWEALNQNDTNRIAKVLGDEQQGLSHVIDILKKDLEDVKALEANL 491          
BLAST of Gchil6535.t1 vs. uniprot
Match: D8Q8A4_SCHCM (Nup54 domain-containing protein n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8Q8A4_SCHCM)

HSP 1 Score: 102 bits (255), Expect = 3.190e-20
Identity = 73/243 (30.04%), Postives = 116/243 (47.74%), Query Frame = 0
Query:  145 LRLPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDM-DEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIVELEASNIDSSGILTPTETERKKRLDTIARALA---APAEFKDKLSDLVEIAE--TTILNRQTQPAVE--IRDPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIM 379
            LRL   + ++    NP  P+ +F    YN V P  ++ Y RP++  +E  W EAV +NPDP RLVPV AN F DL  R   Q K   EH   +  ++  I K+          KL        ++  +LL+  + + L   ++  S +L P E + +  L+ I   LA        + KL++L  +    +    RQ   A E  + D +    I Q+L+DQ  G+ HL+ V  ++ RDI+++
Sbjct:  265 LRLQARMEEIYNAWNPQSPQCRFQHYFYNLVMPEQVAMYGRPANATNEAAWQEAVRRNPDPPRLVPVPANGFGDLRARVEGQTKHAAEHQEKIKDLQSRIAKLRHAHELENHTKLQRAAATQMQVTHRLLKFVARLYLLIPSVRQSTLL-PEEEQLRAALEEIEEDLAHGQGGGRMRAKLNELWALVGVLSAAKERQVSGAGEWAVVDEEGLARIGQILADQQSGLAHLTKVLKKSQRDIAVI 506          
BLAST of Gchil6535.t1 vs. uniprot
Match: A0A284RN56_ARMOS (Nup54 domain-containing protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284RN56_ARMOS)

HSP 1 Score: 101 bits (252), Expect = 8.620e-20
Identity = 69/262 (26.34%), Postives = 129/262 (49.24%), Query Frame = 0
Query:  126 ASQPQMTQNQXXXXXXXXPLRLPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDM-DEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIVELEASNIDSSGILTPTETERKKRLDTIARAL-AAPAEFKDKLSDL------VEIAETTILNRQTQPAVEIRDPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIM 379
            ASQ Q+   Q          +L + +  +    NP  P+ +F    YN V P  +S Y RP +  ++ LW +A+++NPDPS LVPV AN FDDL +R + Q ++   H   +  +++ +  +  +       +LA + +   +LA++++ +A  + L    + SS I  P E E   ++++I   +     + K KL +L      ++  E  I  R+     ++ D +    I Q+LS+Q  G+ +L+ +  +  +D+ I+
Sbjct:  279 ASQQQLVDAQTQFA------KLSQKIESIANAWNPSSPQCRFQHYFYNLVEPNQVSMYGRPPNATNDALWQKAIQENPDPSCLVPVIANGFDDLRQRVDGQTEQATAHKGNIKDLQKRLADLSTQHSTNTISRLARFSQTQIQLAQRIMALAQHLHLLIPTVRSSAI-RPEEEELFAKIESIEEEVRGGKGKMKAKLDELWAVFGALKAKEEGIRERRNSGDWKVVDEEGLARIAQILSEQQNGLAYLTTILQKNLKDLGII 533          
BLAST of Gchil6535.t1 vs. uniprot
Match: A0A550CQJ1_9AGAR (Nucleoporin complex subunit 54-domain-containing protein n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CQJ1_9AGAR)

HSP 1 Score: 100 bits (249), Expect = 2.060e-19
Identity = 71/243 (29.22%), Postives = 117/243 (48.15%), Query Frame = 0
Query:  145 LRLPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDM-DEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIVELEASNIDSSGILTPTETERKKRLDTIARALA---APAEFKDKLSDLVEIAE--TTILNRQTQPAVE--IRDPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIM 379
            LRL   + ++  + NP  P+ +F    YN V P  ++ Y RPS+  ++  W EAV +NPDPSRLVPV AN F DL  R   Q K   +H   +  ++  I K+          KL        ++  +LL+  + + L   ++  S +L P E + +  L+ I   L+        + KL++L  +    +    RQ   A E  + D +    I Q+L+DQ  G+ H++ V  +  RDI+++
Sbjct:  286 LRLQGRIEEISNSWNPQSPQCRFQHYFYNLVLPEQVAMYGRPSNATNDAAWQEAVRRNPDPSRLVPVPANGFGDLRARVEGQTKHAADHQEKIKDLQSRIAKLRNAHELENHTKLQRAAAMQMQVTHRLLKFVARLYLLIPSVRQSTLL-PEEEQLRAVLEEIGEDLSRGQGGGRMRAKLNELWALVGVLSAARERQVTGAGEWAVVDEEGLARIGQILADQQSGLAHITKVLKKAQRDIAVI 527          
BLAST of Gchil6535.t1 vs. uniprot
Match: A0A1C7N1T1_9FUNG (Nucleoporin NUP57 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N1T1_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 2.550e-19
Identity = 59/230 (25.65%), Postives = 115/230 (50.00%), Query Frame = 0
Query:  159 NPLHPESKFHTALYNRVSPGDISRYKRPSDMDEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIVELEASNIDSSGILTPTETERKKRLDTIARALAAPAEFKDKLSDLVEIAET--TILNRQTQPAVEIR---DPKAANTIKQLLSDQLQGIQHLSHVCDRTDRDISIMAAAL 383
            +P      F    YN V   +I  Y+RP +  E+ W+EA+ KNPDP + VPV A  FDD+++R   Q+K+++ H   L +  + ++ +  +       K+  ++RRH +L ++LLR+     L       +G     E+   ++L  +A +  +P +   K++ L    ++    +N+      E+      +  N I ++LSD+ +GI+H++ +    ++D+  + A L
Sbjct:  296 DPTSANCYFRHYFYNMVPENEIHLYRRPENQTEQAWNEAMRKNPDPKKYVPVLAVGFDDILKRMEVQSKQVELHQEKLKETSERLQSVQRQYALGTLVKIEEHKRRHTDLTQRLLRVKYSSVLRYKGFPLNG----EESTCVQQLAQLAESSESPEQLNAKMNALWNRLQSLKAQMNQGGDNRYEVWRTVSEEDTNIIAKILSDEQRGIKHITSILKSDEKDLEAIEAGL 521          
BLAST of Gchil6535.t1 vs. uniprot
Match: A0A1X6PB64_PORUM (Nup54 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PB64_PORUM)

HSP 1 Score: 97.8 bits (242), Expect = 3.660e-19
Identity = 58/133 (43.61%), Postives = 78/133 (58.65%), Query Frame = 0
Query:  147 LPRSLTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDMDEKLWDEAVEKNPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEVXXXXXXKLAAYRRRHRELARKLLRIASIV 279
            LP +L  +++ ++P        TALYN V PG   R+ RP D + +LW +AVE+NP P  LVPVQA LFDDL  R+  QA+R+  H  VL+++           XXXX  +LAA RRRHR LA +   +A  V
Sbjct:  202 LPPALVALVKAVDPASATCALRTALYNVVPPGTGGRHVRPPDFEPRLWADAVERNPAPDALVPVQAVLFDDLAARTALQAERLGGHAGVLAQLDGXXXXXXXXXXXXXASRLAAVRRRHRSLAARATAVAGRV 334          
The following BLAST results are available for this feature:
BLAST of Gchil6535.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q3_9FLOR9.260e-13678.33Nucleoporin nup44 n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QP53_CHOCR1.880e-7853.67Nup54 domain-containing protein n=1 Tax=Chondrus c... [more]
A0A7S1TAT8_9RHOD2.200e-4237.02Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YRR7_PORPP5.560e-2732.67Nucleoporin nup44 n=1 Tax=Porphyridium purpureum T... [more]
A0A1X2I6X7_9FUNG1.130e-2026.72Nucleoporin complex subunit 54-domain-containing p... [more]
D8Q8A4_SCHCM3.190e-2030.04Nup54 domain-containing protein n=1 Tax=Schizophyl... [more]
A0A284RN56_ARMOS8.620e-2026.34Nup54 domain-containing protein n=2 Tax=Armillaria... [more]
A0A550CQJ1_9AGAR2.060e-1929.22Nucleoporin complex subunit 54-domain-containing p... [more]
A0A1C7N1T1_9FUNG2.550e-1925.65Nucleoporin NUP57 n=1 Tax=Choanephora cucurbitarum... [more]
A0A1X6PB64_PORUM3.660e-1943.61Nup54 domain-containing protein n=1 Tax=Porphyra u... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025712Nucleoporin Nup54, alpha-helical domainPFAMPF13874Nup54coord: 185..324
e-value: 1.2E-28
score: 100.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..146
NoneNo IPR availablePANTHERPTHR13000:SF0NUCLEOPORIN P54coord: 1..384
IPR024864Nucleoporin Nup54/Nup57/Nup44PANTHERPTHR13000NUCLEOPORIN P54coord: 1..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:416222..417379 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6535.t1Gchil6535.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 416222..417379 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6535.t1 ID=Gchil6535.t1|Name=Gchil6535.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=386bp
MAFTFGGSSQSQPSVGFGTAASSQAAGSFGFGGSQPQSQSLFGSTPQSQS
LFGQPQSQSLFGQPQSQPLFGQSSQSLFGQSSQSLFGQPQSLFGQPQSST
SLFGAQSQSVWGQSSSAFGGSSLFGASQPQMTQNQQQQQQQQQPLRLPRS
LTDVIETLNPLHPESKFHTALYNRVSPGDISRYKRPSDMDEKLWDEAVEK
NPDPSRLVPVQANLFDDLIERSNTQAKRIDEHLIVLSKIKQLIKKIDGEV
DTDISTKLAAYRRRHRELARKLLRIASIVELEASNIDSSGILTPTETERK
KRLDTIARALAAPAEFKDKLSDLVEIAETTILNRQTQPAVEIRDPKAANT
IKQLLSDQLQGIQHLSHVCDRTDRDISIMAAALNR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025712Nup54_alpha-helical_dom
IPR024864Nup54/Nup57/Nup44