Gchil6496.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6496.t1
Unique NameGchil6496.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length144
Homology
BLAST of Gchil6496.t1 vs. uniprot
Match: A0A2V3IMT3_9FLOR (40S ribosomal protein S12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMT3_9FLOR)

HSP 1 Score: 267 bits (682), Expect = 3.110e-90
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 0
Query:    1 MSDGDVAVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKDGADQ 143
            MSD +V VDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEV KALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK+  D+
Sbjct:    1 MSD-EVPVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVVKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKEDGDE 142          
BLAST of Gchil6496.t1 vs. uniprot
Match: R7QB31_CHOCR (40S ribosomal protein S12 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB31_CHOCR)

HSP 1 Score: 229 bits (585), Expect = 2.850e-75
Identity = 110/126 (87.30%), Postives = 120/126 (95.24%), Query Frame = 0
Query:   13 EDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK 138
            EDVGEMD++KALQEV+KK++VHDGLVRGLNE AKALDRG AQLC+LASDCDEP YTRLIEALC+AH VALVRVPDKKQLGEWAGLCKIDEEGNATKVVG+T  VIKEFGESSPGYEFLLEY+KE+K
Sbjct:   26 EDVGEMDLMKALQEVMKKAIVHDGLVRGLNECAKALDRGLAQLCVLASDCDEPAYTRLIEALCSAHSVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGSTCVVIKEFGESSPGYEFLLEYIKEDK 151          
BLAST of Gchil6496.t1 vs. uniprot
Match: A0A2V3INP5_9FLOR (40S ribosomal protein S12 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INP5_9FLOR)

HSP 1 Score: 227 bits (579), Expect = 2.670e-74
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0
Query:   18 MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK 138
            MDILKALQEVLKKS+VHDGL RGLNEV KALDRGQ QLCILASDCDEPRYTRLI+ALCA HEVALVRVPDKKQLGEWAGLCKID+EGNA KVVGATSCVIKEFGESSPGYE LLEYLKE+K
Sbjct:    1 MDILKALQEVLKKSVVHDGLFRGLNEVVKALDRGQVQLCILASDCDEPRYTRLIDALCAVHEVALVRVPDKKQLGEWAGLCKIDKEGNAAKVVGATSCVIKEFGESSPGYELLLEYLKESK 121          
BLAST of Gchil6496.t1 vs. uniprot
Match: A0A1X6P156_PORUM (40S ribosomal protein S12 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P156_PORUM)

HSP 1 Score: 194 bits (494), Expect = 1.750e-61
Identity = 96/136 (70.59%), Postives = 109/136 (80.15%), Query Frame = 0
Query:    5 DVAVDAVPEDVG-EMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKD 139
            DV   A   D G  MD++KALQE+LKK++VHDGLVRGL E AKALDR +AQLCILA DCDEP YTRLIEALCA H +  VRVP+KKQLGEWAGLCKID EG ATKVVG T  V+K+FGE S G+EFLL+YL  NK+
Sbjct:   13 DVPAPAAAGDTGGAMDLMKALQEILKKAIVHDGLVRGLRECAKALDRREAQLCILAQDCDEPAYTRLIEALCAEHSINFVRVPEKKQLGEWAGLCKIDAEGVATKVVGCTCAVVKQFGERSAGFEFLLDYLNANKE 148          
BLAST of Gchil6496.t1 vs. uniprot
Match: A0A2V3IBS1_9FLOR (40S ribosomal protein S12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBS1_9FLOR)

HSP 1 Score: 182 bits (463), Expect = 3.500e-57
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0
Query:   18 MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK 138
            MDILKALQEVLKKS+VH    RGLNEV KALDRGQ QLCILASDCDEPRYTRLI+ALCA HEVALVRVPDKKQLGEWAGLCKID+E               EFGESSPGYE LLEYLKE+K
Sbjct:    1 MDILKALQEVLKKSVVHTDWFRGLNEVVKALDRGQVQLCILASDCDEPRYTRLIDALCAVHEVALVRVPDKKQLGEWAGLCKIDKE---------------EFGESSPGYELLLEYLKESK 106          
BLAST of Gchil6496.t1 vs. uniprot
Match: A0A5J4Z5L5_PORPP (40S ribosomal protein S12 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5L5_PORPP)

HSP 1 Score: 180 bits (457), Expect = 6.180e-56
Identity = 86/123 (69.92%), Postives = 102/123 (82.93%), Query Frame = 0
Query:   14 DVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKE 136
            D GEMDI KALQEVLKK+L+HDGL+RGL E AKALDRG+AQLC+LASDCDEP YTRL+EALCA   + LV+VP+K QLGEWAGL K+DE+G  TK V A+  V+K+FGE S G +FL EYL+E
Sbjct:   18 DEGEMDITKALQEVLKKALIHDGLLRGLRECAKALDRGEAQLCVLASDCDEPAYTRLVEALCAERGINLVKVPEKMQLGEWAGLAKVDEQGIVTKSVKASCVVVKDFGEQSKGLDFLKEYLRE 140          
BLAST of Gchil6496.t1 vs. uniprot
Match: A0A7S0ZM77_9RHOD (40S ribosomal protein S12 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZM77_9RHOD)

HSP 1 Score: 175 bits (443), Expect = 8.080e-54
Identity = 89/128 (69.53%), Postives = 103/128 (80.47%), Query Frame = 0
Query:   10 AVPEDVGE--MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLK 135
            +VPE + E  MDI  ALQEVLK +L+HDGLVRGL E AKALDR QAQLCILASDCDEP YTRL+EALCA   + LV+VP+K QLG+WAGL KIDE G ATKVV A+  V+K+FG++S G EFLL YLK
Sbjct:   13 SVPEVLDESVMDITMALQEVLKVALIHDGLVRGLRECAKALDRRQAQLCILASDCDEPAYTRLVEALCAERGINLVKVPEKMQLGQWAGLAKIDETGTATKVVKASCVVVKDFGDTSKGLEFLLNYLK 140          
BLAST of Gchil6496.t1 vs. uniprot
Match: U4TUS6_DENPD (40S ribosomal protein S12 n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4TUS6_DENPD)

HSP 1 Score: 166 bits (421), Expect = 1.910e-50
Identity = 76/123 (61.79%), Postives = 99/123 (80.49%), Query Frame = 0
Query:   16 GEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK 138
            G MD+ +ALQEVLKK+L+HDG+V GL+E AKALD+ QA LC+LA +CDEPRY +L++ALCA H++ L++V + K+LGEW+GLCKID  G A KVVG++  VIK+FGE SP  + L EYLK NK
Sbjct:   22 GPMDVNQALQEVLKKALIHDGVVHGLHEAAKALDKRQAVLCVLAENCDEPRYKQLVQALCAEHQIDLIKVDNNKKLGEWSGLCKIDSTGKARKVVGSSCVVIKDFGEESPALDVLKEYLKNNK 144          
BLAST of Gchil6496.t1 vs. uniprot
Match: A0A7M7LM97_NASVI (40S ribosomal protein S12 n=5 Tax=Parasitoida TaxID=1955251 RepID=A0A7M7LM97_NASVI)

HSP 1 Score: 162 bits (411), Expect = 5.590e-49
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 0
Query:    5 DVAVDAVPEDV--GEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKEN 137
            DV  D VP  V  G+MD+  ALQEVLK +L+HDG+V GL+E AK LD+ QA LCILA +CDEP Y +L++ALC  H++ L++V + K+LGEWAGLCKID  G A KVVG +  VIK+FGE +P  + L+EYLK++
Sbjct:    3 DVETDDVPSAVIGGQMDVNTALQEVLKNALIHDGVVHGLHEAAKVLDKRQAMLCILAENCDEPMYKKLVQALCNEHQIPLIKVDNNKKLGEWAGLCKIDNAGKARKVVGCSCVVIKDFGEETPAKDVLMEYLKQS 137          
BLAST of Gchil6496.t1 vs. uniprot
Match: M1XYD7_9METZ (40S ribosomal protein S12 n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XYD7_9METZ)

HSP 1 Score: 162 bits (409), Expect = 1.020e-48
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 0
Query:    2 SDGDVAVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLK 135
            ++GD    AV      MDI  AL EVLK SL+HDGL RGL+E AKALD+ QA LC+LAS+CDEP Y RL+EALCA H++ L++V D K+LGEW+GLCK+D+EG A KVVG +  V+K++G+ S   + LLEYLK
Sbjct:    3 AEGDAPAAAV-----SMDITTALTEVLKTSLIHDGLARGLHEAAKALDKRQAHLCVLASNCDEPSYVRLVEALCAEHQIKLLKVDDSKKLGEWSGLCKLDKEGKARKVVGCSCVVVKDYGKESQALDVLLEYLK 131          
The following BLAST results are available for this feature:
BLAST of Gchil6496.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMT3_9FLOR3.110e-9094.4140S ribosomal protein S12 n=1 Tax=Gracilariopsis c... [more]
R7QB31_CHOCR2.850e-7587.3040S ribosomal protein S12 n=1 Tax=Chondrus crispus... [more]
A0A2V3INP5_9FLOR2.670e-7491.7440S ribosomal protein S12 n=2 Tax=Gracilariopsis c... [more]
A0A1X6P156_PORUM1.750e-6170.5940S ribosomal protein S12 n=1 Tax=Porphyra umbilic... [more]
A0A2V3IBS1_9FLOR3.500e-5777.6940S ribosomal protein S12 n=1 Tax=Gracilariopsis c... [more]
A0A5J4Z5L5_PORPP6.180e-5669.9240S ribosomal protein S12 n=1 Tax=Porphyridium pur... [more]
A0A7S0ZM77_9RHOD8.080e-5469.5340S ribosomal protein S12 n=1 Tax=Timspurckia olig... [more]
U4TUS6_DENPD1.910e-5061.7940S ribosomal protein S12 n=2 Tax=Dendroctonus pon... [more]
A0A7M7LM97_NASVI5.590e-4957.0440S ribosomal protein S12 n=5 Tax=Parasitoida TaxI... [more]
M1XYD7_9METZ1.020e-4858.2140S ribosomal protein S12 n=1 Tax=Sycon ciliatum T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 41..57
score: 56.68
coord: 27..40
score: 65.58
coord: 82..103
score: 63.64
coord: 107..120
score: 37.66
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 13..137
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 23..41
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 2..137
e-value: 2.0E-51
score: 174.8
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 17..136
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 23..115
e-value: 7.4E-30
score: 102.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:121299..121730 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6496.t1Gchil6496.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 121299..121730 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6496.t1 ID=Gchil6496.t1|Name=Gchil6496.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=144bp
MSDGDVAVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDR
GQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKI
DEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKDGADQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000530Ribosomal_S12e
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45