Gchil6566.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6566.t1
Unique Name	Gchil6566.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:644593..646224 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	240292.Ava_0200
Preferred name	crtQ
PFAMs	Amino_oxidase
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01214,RC01959
KEGG ko	ko:K00514
KEGG Reaction	R04798,R04800,R07511,R09656,R09658
KEGG Pathway	ko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG Module	M00097
Evalue	3.58e-228
EggNOG OGs	COG3349@1\|root,COG3349@2\|Bacteria,1G09Q@1117\|Cyanobacteria,1HKFZ@1161\|Nostocales
EC	1.3.5.6
Description	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6566	Gchil6566	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 644593..646224 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6566.t1.start1	Gchil6566.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 644593..644595 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6566.t1.CDS1	Gchil6566.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 644593..646224 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6566.t1.exon1	Gchil6566.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 644593..646224 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6566.t1.stop1	Gchil6566.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 646222..646224 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6566.t1	Gchil6566.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 644593..646224 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:644593..646224+
coding sequence from alignment at tig00004390_pilon:644593..646224+

mRNA sequence

>Gchil6566.t1 ID=Gchil6566.t1|Name=Gchil6566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=544bp
MHRNTAFTTASPLPCRVSSQSHQSKCALRVLRPRRCLRMSLAADVWNVNT
VPQTNANGKKIALVGAGLAALITAMELVDAGCHVSLYDTRPFAGGKVGSW
VDPDGNHIEMGLHVFFGCYYNLFDVMAKVGSFKHLLMKEHTHQFINKGGL
VGELDFRMGTVGAPFNGLKAFGATSQLGFVDKVRNALALGSSVIVRGLVD
FDGAMSDIRALDNISFSEWFLSKGGTRGSIQRLWDPIAYALGFINCDNMS
ARCMLTIFQLFAARSEASVLRMLEGSPDKFLTAPIVRYIEERGATLNLRT
KVREVLYETDEKGHTRVTGLVVANGVENKVVQADYYVAACDVAGAKRLIP
GEWRERYDQFKKLYELDAVPVVTVQVRFDGWVTELQDEQKRMRVGNGQAY
GINNLLYSADADFSCFADLALTSPTDYYKEGEGSLMQVVLTPGDPYITKT
DKEIVSAVLEQLQALFPSARDLKCTWSSVVKLAESLYREEPGKDLYRPTQ
RTVVDNFFLAGSYTYQDYIDSMEGAVKSGKLAAAAVLETVAAN*

spliced messenger RNA

>Gchil6566.t1 ID=Gchil6566.t1|Name=Gchil6566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00004390_pilon:644593..646224+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCAACACCGCGTTTACCACCGCAAGTCCGCTGCCGTGCAGAGT
CTCTTCACAATCGCACCAGTCCAAATGTGCGCTCCGCGTCCTGCGACCGC
GCCGCTGCTTGCGCATGTCCCTGGCCGCTGACGTCTGGAACGTGAACACT
GTGCCTCAGACCAACGCAAACGGTAAGAAAATTGCCCTTGTCGGCGCTGG
CCTGGCCGCCTTGATTACTGCTATGGAGCTTGTGGACGCCGGCTGCCACG
TTTCTCTGTACGATACCCGCCCGTTTGCTGGCGGCAAAGTGGGTAGCTGG
GTTGATCCCGATGGCAACCACATTGAGATGGGTTTGCATGTGTTTTTCGG
CTGCTATTACAACTTGTTTGATGTTATGGCAAAGGTCGGTTCTTTTAAGC
ACTTGTTAATGAAGGAGCACACTCATCAGTTCATCAACAAGGGTGGATTA
GTCGGTGAGCTTGATTTTCGAATGGGCACTGTGGGCGCCCCATTTAATGG
CCTCAAGGCGTTTGGCGCAACCTCGCAGCTCGGCTTTGTCGATAAAGTAC
GAAATGCTCTGGCGCTCGGTAGTTCTGTAATTGTCAGGGGCCTGGTTGAC
TTTGATGGCGCCATGAGCGACATCCGTGCCTTGGACAACATCTCCTTCTC
GGAGTGGTTCTTGTCCAAGGGTGGAACTCGCGGTTCTATCCAGCGTTTGT
GGGATCCTATTGCTTATGCTTTGGGATTTATTAACTGCGATAATATGTCT
GCCAGGTGCATGCTCACCATATTTCAACTGTTCGCTGCCAGGTCAGAAGC
GTCTGTCCTGAGAATGCTGGAAGGTAGTCCGGACAAGTTTCTCACCGCTC
CTATTGTGAGATATATCGAGGAAAGAGGCGCCACTCTCAATTTGCGAACA
AAGGTACGAGAAGTTTTGTACGAAACTGATGAGAAAGGACACACACGGGT
AACTGGCCTTGTTGTGGCAAATGGTGTGGAGAACAAAGTAGTGCAAGCGG
ATTATTATGTGGCTGCCTGTGATGTTGCTGGCGCAAAACGTCTCATCCCG
GGAGAGTGGAGAGAGCGGTATGACCAATTTAAAAAACTCTACGAATTGGA
CGCAGTCCCAGTTGTCACAGTGCAGGTGCGCTTTGATGGCTGGGTGACGG
AATTGCAAGACGAACAAAAGCGAATGCGCGTTGGAAACGGGCAAGCCTAC
GGAATCAACAATCTGTTATACTCGGCAGACGCAGATTTTTCGTGTTTCGC
AGACCTCGCGCTCACGTCGCCAACAGACTACTACAAGGAAGGCGAAGGCA
GTTTGATGCAAGTGGTTTTGACGCCTGGAGACCCTTATATTACTAAGACA
GACAAAGAGATTGTGTCGGCCGTTTTGGAGCAACTGCAAGCTCTGTTCCC
TAGCGCGCGAGACCTCAAGTGCACTTGGAGCTCGGTTGTGAAGCTCGCTG
AAAGCTTGTACAGAGAAGAGCCTGGGAAGGACCTTTATCGACCGACGCAA
AGAACAGTCGTGGACAACTTTTTCTTGGCTGGTAGCTATACATATCAAGA
CTATATTGACTCGATGGAAGGCGCGGTGAAGAGCGGGAAGCTGGCGGCAG
CGGCGGTTCTGGAGACTGTTGCGGCTAACTAG

protein sequence of Gchil6566.t1

>Gchil6566.t1 ID=Gchil6566.t1|Name=Gchil6566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=544bp
MHRNTAFTTASPLPCRVSSQSHQSKCALRVLRPRRCLRMSLAADVWNVNT
VPQTNANGKKIALVGAGLAALITAMELVDAGCHVSLYDTRPFAGGKVGSW
VDPDGNHIEMGLHVFFGCYYNLFDVMAKVGSFKHLLMKEHTHQFINKGGL
VGELDFRMGTVGAPFNGLKAFGATSQLGFVDKVRNALALGSSVIVRGLVD
FDGAMSDIRALDNISFSEWFLSKGGTRGSIQRLWDPIAYALGFINCDNMS
ARCMLTIFQLFAARSEASVLRMLEGSPDKFLTAPIVRYIEERGATLNLRT
KVREVLYETDEKGHTRVTGLVVANGVENKVVQADYYVAACDVAGAKRLIP
GEWRERYDQFKKLYELDAVPVVTVQVRFDGWVTELQDEQKRMRVGNGQAY
GINNLLYSADADFSCFADLALTSPTDYYKEGEGSLMQVVLTPGDPYITKT
DKEIVSAVLEQLQALFPSARDLKCTWSSVVKLAESLYREEPGKDLYRPTQ
RTVVDNFFLAGSYTYQDYIDSMEGAVKSGKLAAAAVLETVAAN*

mRNA from alignment at tig00004390_pilon:644593..646224+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6566.t1 ID=Gchil6566.t1|Name=Gchil6566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00004390_pilon:644593..646224+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGCAACACCGCGTTTACCACCGCAAGTCCGCTGCCGTGCAGAGT
CTCTTCACAATCGCACCAGTCCAAATGTGCGCTCCGCGTCCTGCGACCGC
GCCGCTGCTTGCGCATGTCCCTGGCCGCTGACGTCTGGAACGTGAACACT
GTGCCTCAGACCAACGCAAACGGTAAGAAAATTGCCCTTGTCGGCGCTGG
CCTGGCCGCCTTGATTACTGCTATGGAGCTTGTGGACGCCGGCTGCCACG
TTTCTCTGTACGATACCCGCCCGTTTGCTGGCGGCAAAGTGGGTAGCTGG
GTTGATCCCGATGGCAACCACATTGAGATGGGTTTGCATGTGTTTTTCGG
CTGCTATTACAACTTGTTTGATGTTATGGCAAAGGTCGGTTCTTTTAAGC
ACTTGTTAATGAAGGAGCACACTCATCAGTTCATCAACAAGGGTGGATTA
GTCGGTGAGCTTGATTTTCGAATGGGCACTGTGGGCGCCCCATTTAATGG
CCTCAAGGCGTTTGGCGCAACCTCGCAGCTCGGCTTTGTCGATAAAGTAC
GAAATGCTCTGGCGCTCGGTAGTTCTGTAATTGTCAGGGGCCTGGTTGAC
TTTGATGGCGCCATGAGCGACATCCGTGCCTTGGACAACATCTCCTTCTC
GGAGTGGTTCTTGTCCAAGGGTGGAACTCGCGGTTCTATCCAGCGTTTGT
GGGATCCTATTGCTTATGCTTTGGGATTTATTAACTGCGATAATATGTCT
GCCAGGTGCATGCTCACCATATTTCAACTGTTCGCTGCCAGGTCAGAAGC
GTCTGTCCTGAGAATGCTGGAAGGTAGTCCGGACAAGTTTCTCACCGCTC
CTATTGTGAGATATATCGAGGAAAGAGGCGCCACTCTCAATTTGCGAACA
AAGGTACGAGAAGTTTTGTACGAAACTGATGAGAAAGGACACACACGGGT
AACTGGCCTTGTTGTGGCAAATGGTGTGGAGAACAAAGTAGTGCAAGCGG
ATTATTATGTGGCTGCCTGTGATGTTGCTGGCGCAAAACGTCTCATCCCG
GGAGAGTGGAGAGAGCGGTATGACCAATTTAAAAAACTCTACGAATTGGA
CGCAGTCCCAGTTGTCACAGTGCAGGTGCGCTTTGATGGCTGGGTGACGG
AATTGCAAGACGAACAAAAGCGAATGCGCGTTGGAAACGGGCAAGCCTAC
GGAATCAACAATCTGTTATACTCGGCAGACGCAGATTTTTCGTGTTTCGC
AGACCTCGCGCTCACGTCGCCAACAGACTACTACAAGGAAGGCGAAGGCA
GTTTGATGCAAGTGGTTTTGACGCCTGGAGACCCTTATATTACTAAGACA
GACAAAGAGATTGTGTCGGCCGTTTTGGAGCAACTGCAAGCTCTGTTCCC
TAGCGCGCGAGACCTCAAGTGCACTTGGAGCTCGGTTGTGAAGCTCGCTG
AAAGCTTGTACAGAGAAGAGCCTGGGAAGGACCTTTATCGACCGACGCAA
AGAACAGTCGTGGACAACTTTTTCTTGGCTGGTAGCTATACATATCAAGA
CTATATTGACTCGATGGAAGGCGCGGTGAAGAGCGGGAAGCTGGCGGCAG
CGGCGGTTCTGGAGACTGTTGCGGCTAACTAG

Coding sequence (CDS) from alignment at tig00004390_pilon:644593..646224+

>Gchil6566.t1 ID=Gchil6566.t1|Name=Gchil6566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00004390_pilon:644593..646224+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGCAACACCGCGTTTACCACCGCAAGTCCGCTGCCGTGCAGAGT
CTCTTCACAATCGCACCAGTCCAAATGTGCGCTCCGCGTCCTGCGACCGC
GCCGCTGCTTGCGCATGTCCCTGGCCGCTGACGTCTGGAACGTGAACACT
GTGCCTCAGACCAACGCAAACGGTAAGAAAATTGCCCTTGTCGGCGCTGG
CCTGGCCGCCTTGATTACTGCTATGGAGCTTGTGGACGCCGGCTGCCACG
TTTCTCTGTACGATACCCGCCCGTTTGCTGGCGGCAAAGTGGGTAGCTGG
GTTGATCCCGATGGCAACCACATTGAGATGGGTTTGCATGTGTTTTTCGG
CTGCTATTACAACTTGTTTGATGTTATGGCAAAGGTCGGTTCTTTTAAGC
ACTTGTTAATGAAGGAGCACACTCATCAGTTCATCAACAAGGGTGGATTA
GTCGGTGAGCTTGATTTTCGAATGGGCACTGTGGGCGCCCCATTTAATGG
CCTCAAGGCGTTTGGCGCAACCTCGCAGCTCGGCTTTGTCGATAAAGTAC
GAAATGCTCTGGCGCTCGGTAGTTCTGTAATTGTCAGGGGCCTGGTTGAC
TTTGATGGCGCCATGAGCGACATCCGTGCCTTGGACAACATCTCCTTCTC
GGAGTGGTTCTTGTCCAAGGGTGGAACTCGCGGTTCTATCCAGCGTTTGT
GGGATCCTATTGCTTATGCTTTGGGATTTATTAACTGCGATAATATGTCT
GCCAGGTGCATGCTCACCATATTTCAACTGTTCGCTGCCAGGTCAGAAGC
GTCTGTCCTGAGAATGCTGGAAGGTAGTCCGGACAAGTTTCTCACCGCTC
CTATTGTGAGATATATCGAGGAAAGAGGCGCCACTCTCAATTTGCGAACA
AAGGTACGAGAAGTTTTGTACGAAACTGATGAGAAAGGACACACACGGGT
AACTGGCCTTGTTGTGGCAAATGGTGTGGAGAACAAAGTAGTGCAAGCGG
ATTATTATGTGGCTGCCTGTGATGTTGCTGGCGCAAAACGTCTCATCCCG
GGAGAGTGGAGAGAGCGGTATGACCAATTTAAAAAACTCTACGAATTGGA
CGCAGTCCCAGTTGTCACAGTGCAGGTGCGCTTTGATGGCTGGGTGACGG
AATTGCAAGACGAACAAAAGCGAATGCGCGTTGGAAACGGGCAAGCCTAC
GGAATCAACAATCTGTTATACTCGGCAGACGCAGATTTTTCGTGTTTCGC
AGACCTCGCGCTCACGTCGCCAACAGACTACTACAAGGAAGGCGAAGGCA
GTTTGATGCAAGTGGTTTTGACGCCTGGAGACCCTTATATTACTAAGACA
GACAAAGAGATTGTGTCGGCCGTTTTGGAGCAACTGCAAGCTCTGTTCCC
TAGCGCGCGAGACCTCAAGTGCACTTGGAGCTCGGTTGTGAAGCTCGCTG
AAAGCTTGTACAGAGAAGAGCCTGGGAAGGACCTTTATCGACCGACGCAA
AGAACAGTCGTGGACAACTTTTTCTTGGCTGGTAGCTATACATATCAAGA
CTATATTGACTCGATGGAAGGCGCGGTGAAGAGCGGGAAGCTGGCGGCAG
CGGCGGTTCTGGAGACTGTTGCGGCTAACTAG