Gchil6257.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6257.t1
Unique NameGchil6257.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length471
Homology
BLAST of Gchil6257.t1 vs. uniprot
Match: A0A2V3IY28_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY28_9FLOR)

HSP 1 Score: 590 bits (1522), Expect = 1.830e-207
Identity = 329/448 (73.44%), Postives = 352/448 (78.57%), Query Frame = 0
Query:   37 TPVVHPVATSLVELTTTTATHDLSPPLSPSNLSATPPLSPHL----------SEQPSPLSDSDDHSAPASPKHKQSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIIRQPGCDDVIKAVRDIIAERRQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMTKYPAPGAPSEPLPLEDLFSDGTDFSPNAFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSSHINSTFDLILNWDKILRNNFQ-KPRVWACLTNDGLEGDPATIDVKSAISAISPPDLRPKAHYFCSTDDNFSVSFRSLAKDIVTMGRIARDEELANSIALEEARNLADHEAXXXXXXXXXASLVIANNGIGVPPS---SXXXXXXXXXXXXXXXXXXGVGRTFSLRGLRDRGNHHGQGLSLSNFIVWNWFASSNES 470
            TPV  P+AT L+        H L+ P  P N S +PPLSP +                     D S P+SPK   S+T LLDSDSSCVVCFERPTNV LDPCGHANLCDVCVSRLVKRRCPTCRARARKV IR+PGC+DVIKAVRDIIAER+QRESKVLEDTLQVVFLGPEKVGKKTLV KLMTKYP PGAPSEPL LE+LFSDGTDFSPNAFI G NVRLTVLRRT+LTSRRMILDDVRVLKPDVLVLCCSSH+ STF+LILNWDKILRNNFQ KPRVWACLT D ++ D  TIDVK AI AI+P DLRPKAHYFCST  +FSV FRSLAKD+V MG IARDEELAN+IALEEARNLADH  XXXXXXXXX +LVIANNGIGVPPS   S                  GVGR+FSLRG RDRGNH GQGLSLSN IVWNWFA SN+S
Sbjct:   35 TPVEQPLATPLL--------HILASP--PDNTSPSPPLSPSILXXXXXXXXXXXXXXXXXXDSDQSTPSSPKEHNSDTGLLDSDSSCVVCFERPTNVTLDPCGHANLCDVCVSRLVKRRCPTCRARARKVCIRKPGCNDVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLVRKLMTKYPLPGAPSEPLSLEELFSDGTDFSPNAFIDGKNVRLTVLRRTNLTSRRMILDDVRVLKPDVLVLCCSSHVRSTFELILNWDKILRNNFQQKPRVWACLTMDDVDCDSTTIDVKGAIGAIAPADLRPKAHYFCSTGGHFSVGFRSLAKDVVRMGGIARDEELANAIALEEARNLADHXXXXXXXXXXXXNLVIANNGIGVPPSAHTSSHAHRSNNSGSRNHHPHHGVGRSFSLRGFRDRGNH-GQGLSLSNLIVWNWFAGSNDS 471          
BLAST of Gchil6257.t1 vs. uniprot
Match: R7Q5N8_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5N8_CHOCR)

HSP 1 Score: 441 bits (1133), Expect = 3.730e-149
Identity = 247/397 (62.22%), Postives = 288/397 (72.54%), Query Frame = 0
Query:   87 DSDDHSAPASPKHKQSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIIRQPGCDDVIKAVRDIIAERRQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMTKYPAPGAP-SEPLPLE-DLFSDGTDFSPNAFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSSHINSTFDLILNWDKILRNNFQKPRVWACLTNDGLEGDPATI------DVKSAISAISPPDLRPKAHYFCSTDDNFSVSFRSLAKDIVTMGRIARDEELANSIALEEARNLADHEAXXXXXXXXXASLVIANNGIGVPPSSXXXXXXXXXXXXXXXXXXGVGRTFSLRGLRDRGNHH-----GQGLSLSNFIVWNWFASSNES 470
            + DD + P SP            D++CVVCFER  NV LDPCGHANLCDVCVSRLVKRRCPTCRARARKV I++PG   V K VR++I ER+ RESKVLEDTLQVVFLGPEKVGKKTLV KL++K+P P +  +E    E D+FSDGTDFS NA I G NVRLTVLRRT+LTSRRM+LDDVRVLKPDVLVLCCS+H+ +TF+ IL+WDK+LRNNFQKPR+WA LT D  +G PAT       DV  AISAI P DLRPK+H+ CS  + FS+ FRSL KDIV++GRIARD+ELA SIALEEAR+LADHEA         A LV ANNGI VP SS                  GVGR+FSLRG R+R +++     GQG+S+SNF   NW A S+ES
Sbjct:   37 EDDDRTPPVSPLPADDPPP----DAACVVCFERQPNVTLDPCGHANLCDVCVSRLVKRRCPTCRARARKVAIQRPGEQVVTKGVREVIQERKLRESKVLEDTLQVVFLGPEKVGKKTLVRKLISKFPHPTSQLNEDHHSELDVFSDGTDFSANAAIYGANVRLTVLRRTTLTSRRMVLDDVRVLKPDVLVLCCSAHVGATFNTILSWDKVLRNNFQKPRLWALLTLDDKDG-PATTKFDTAHDVSGAISAIIPTDLRPKSHHICSLGEQFSIGFRSLPKDIVSLGRIARDQELAASIALEEARSLADHEAAGTIGDQAAAELVRANNGIEVPSSSTSVPGHGSRGGNSSRGN-GVGRSFSLRGFRERNSNNPNGSSGQGISVSNFF--NWLAGSHES 425          
BLAST of Gchil6257.t1 vs. uniprot
Match: A0A1X6NLT0_PORUM (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLT0_PORUM)

HSP 1 Score: 196 bits (497), Expect = 1.850e-52
Identity = 133/372 (35.75%), Postives = 183/372 (49.19%), Query Frame = 0
Query:  108 DSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVII----RQPGCDDVIKAV-------------------RDIIAERRQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMTKYP----------------APGAPSEPLPLEDLF-----------SDGTDFSPNAFI-GGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSSHIN-STFDLILNWDKILRNNFQKPRVWACLTNDGL--------EGDP---------------------------------------------ATID--VKSAISAISPPDLRPKAHYFCSTDDNFSVSFRSLAKDIVTMGRIARDEELA 372
            D  S C++CFER  NV+L PC HAN+C  CV RLVKRRCPTCRAR R++ +     + G DD   A+                   R++I+ R+QRE   L+ TLQ+VF+GP  VGKK+LV KL  K+P                A GA                       DGTDF PN  + GG+  RLTVLRRT LTSRRM+LDDVR+L+PD LVLCC++    ++F  +L++D++LR +   PR+WA +   G          G P                                             AT+   V SA+++++PP +RP+  YF +    FS+  R+LA+D+V  GR  R+  +A
Sbjct:  172 DPASWCIICFERAPNVELRPCTHANICLDCVVRLVKRRCPTCRARVRRIRLLTADAEAGVDDSEAAIAAAAALGMPPTDAAGTVSLRELISARKQREVAALDSTLQIVFVGPPAVGKKSLVRKLCAKWPLRPPGGRGGAAASSAAADGAADXXXXXXXXXXXXADIGVNGNGDGTDFRPNVTLPGGIPARLTVLRRTLLTSRRMLLDDVRLLRPDALVLCCAAGDGCASFGELLSFDRVLRASIAAPRLWAVVDGGGALSVGGGLPSGGPDALWPSPAAATSGSWDGSSTSLGXXXXXXXXXGRSPVGAASVTSDATLRDFVGSALASVNPPSVRPRGLYFVTPSAPFSMGLRALARDLVDHGRSGREAAIA 543          
BLAST of Gchil6257.t1 vs. uniprot
Match: A0A6T6ALF8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6ALF8_9RHOD)

HSP 1 Score: 124 bits (311), Expect = 7.350e-28
Identity = 91/309 (29.45%), Postives = 142/309 (45.95%), Query Frame = 0
Query:   95 ASPKHKQSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVII---------------------------------------RQPGC---DDVIKAVRDIIAERRQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMTKYPAPGAPSEPLPLEDLFSDG--------------TDFSP----NAFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSSHINSTFDLILNWDKILRNNFQKPRVWACLTNDGLEGDPATIDVKS----AISAISPPDLRPKAH 339
            A+P  + SE   L+ + SC VC+ER   + L+PC H +LC+VCV+RL ++RCPTCR R  +                                          R+P C   +   + +RDI+ E+R++E +  +  LQ++ +G  K  K+ L+   +  +       +      L  DG               D  P    NA + G  +RL+ L R   + RR++LDDV++ +PD +V+C S     +FD +L WD++LRNNF  PR W  L  +G E +    +++     AIS I P   RP  H
Sbjct:   28 ANPADEASEEPDLE-EGSCCVCWERKATLFLEPCLHRHLCEVCVTRLWRKRCPTCRDRVYRAHFGNCSSADVTTALSRISLENGFAPEEEKESEEGESNTNGRREPPCAFGEGPCRLIRDIMREKREKEEEEWKGALQILLVGSPKEDKRDLIATAVGMFHLDRGTIQGSARGCLHPDGGREVHTNQSYDTSEDDALPCYRANAMLDGSLLRLSCLDRDVSSFRRILLDDVKLFRPDCIVICSSLSNRQSFDSLLLWDRVLRNNFSVPRFWVLL--EGEESNLTFPEIREQLGRAISTI-PTISRPATH 332          
BLAST of Gchil6257.t1 vs. uniprot
Match: A0A7S0G2R4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2R4_9RHOD)

HSP 1 Score: 101 bits (251), Expect = 3.440e-20
Identity = 67/244 (27.46%), Postives = 112/244 (45.90%), Query Frame = 0
Query:  100 KQSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIIRQPGCDDVIKAVR--DIIAERRQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMT--------KYPAPGAPSEPLPLEDLFSDGTD----FSPNAFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSSHINSTFDLILNWDKILRNNFQKPRVWACLTNDGLEGDPATIDVKSAISAI 329
            +  E A+      C VC  +   VK  PCGH  +CD C+  L + RC  CR R   V       +D  + ++  +    R + E+  L++T QV+FLGP  V  + LV +L +        ++            E+ F  G +    F  N++I G   R + L+  +  +RR +      + PD++VLCC  H   +F  ++ WDK LR   + PR+W    + GL+  P  ++V  ++  +
Sbjct:    2 RMEEQAVHGDRDFCAVCLSQDAAVKFIPCGHRTVCDCCLPFLDEPRCIICRRRIELV-------EDGGRLMKWGEAFNGRLEAEAMDLQNTFQVLFLGPGSVSTRALVRELCSTLSSDNKRRFLRRNGRRNSTIREEGFVVGAEWNARFQCNSYIRGAKHRFSSLQVAATPTRRAVARIYEEIVPDMVVLCCDYHDPESFVNMVRWDKALRLRCKVPRMWVVQIHSGLDESPCVLNVAGSVEKV 238          
BLAST of Gchil6257.t1 vs. uniprot
Match: A0A7S2ZAZ4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAZ4_9RHOD)

HSP 1 Score: 90.5 bits (223), Expect = 1.930e-16
Identity = 65/242 (26.86%), Postives = 111/242 (45.87%), Query Frame = 0
Query:  100 KQSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIIRQPGCDDVIKAVRDIIAERRQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMTKYPAPGAPS--------EPLPLEDLFSDGTDFSP----NAFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSSHINSTFDLILNWDKILRNNFQKPRVWACLTNDGLEGDPATIDVKSAISAI 329
            +  E A+ +    C VC  +   VK  PC H  +CD C+  L +  C  CR   R + + + G D ++K   +    R + E+  L++T QV+FLGP  V  + LV +L +   +                  E+ F  G ++S     N +I G+  R + L+  +  +R  +      + PD++VLCC  H   +F  ++ WDK LR   + PR+W    + GLE     ++V  ++  +
Sbjct:    6 RMGEQAVQEERDLCSVCLSQDATVKFLPCEHRIVCDCCLPFLDEPHCIMCR---RHIDLVEDG-DRLVKWG-EAFRGRLEAEAMDLQNTFQVLFLGPGSVSTRALVRELCSTLSSDNKRPFFRRNFRRSSTISEEEFVVGAEWSARFQCNGYIRGVRHRFSSLQVATTPTRGAVARIYEEIVPDMVVLCCDYHDPESFLNMVRWDKALRLRCKVPRMWIVQIHSGLEEPQFVLNVAGSVEKV 242          
BLAST of Gchil6257.t1 vs. uniprot
Match: A0A7S0ZUU8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZUU8_NOCSC)

HSP 1 Score: 69.7 bits (169), Expect = 1.980e-10
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 0
Query:   48 VELTTTTATHDLSPPLSPSNLSATPPLSPHLSEQP---SPLSDSDDHSAPA---------SPKHKQSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRA 151
            + L  +TA    SPP +P      PP +P L   P   SP S +  HS P+         SP  ++S  AL D D++CV+CFE P  V+L+PCGH+  C  C  ++  R+CP CRA
Sbjct:   32 IGLRRSTAPSAQSPPHAPPVPETPPPQAPLLVLPPTLQSPSSPNRRHSVPSTLSPKAPVDSPGRRRSAPALDDDDNTCVICFESPGGVRLEPCGHSLFCQACARKV--RKCPLCRA 145          
BLAST of Gchil6257.t1 vs. uniprot
Match: A0A7S1AEH7_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AEH7_NOCSC)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 0
Query:   98 KHKQSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRA 151
            K   +ET   D D  CV+CFERP  V+L PCGH   C VC  ++  R+CP CRA
Sbjct:  115 KRSTAETESADEDDMCVICFERPGGVQLQPCGHDPFCRVCARQV--RKCPLCRA 166          
The following BLAST results are available for this feature:
BLAST of Gchil6257.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IY28_9FLOR1.830e-20773.44RING-type domain-containing protein n=1 Tax=Gracil... [more]
R7Q5N8_CHOCR3.730e-14962.22RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A1X6NLT0_PORUM1.850e-5235.75RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A6T6ALF8_9RHOD7.350e-2829.45Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0G2R4_9RHOD3.440e-2027.46Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZAZ4_9RHOD1.930e-1626.86Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ZUU8_NOCSC1.980e-1038.79Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S1AEH7_NOCSC1.020e-750.00Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 113..149
e-value: 2.6E-5
score: 33.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 113..150
score: 11.574592
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 110..155
e-value: 1.2E-10
score: 41.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..432
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..435
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..90
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 105..155
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 90..158
e-value: 1.8E-13
score: 51.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 188..350

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004388_piloncontigtig00004388_pilon:181597..183009 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6257.t1Gchil6257.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004388_pilon 181597..183009 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6257.t1 ID=Gchil6257.t1|Name=Gchil6257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=471bp
MDSDIHNVQQDPQQTLPQHVIPDQQRPQHQHQPQLPTPVVHPVATSLVEL
TTTTATHDLSPPLSPSNLSATPPLSPHLSEQPSPLSDSDDHSAPASPKHK
QSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCR
ARARKVIIRQPGCDDVIKAVRDIIAERRQRESKVLEDTLQVVFLGPEKVG
KKTLVTKLMTKYPAPGAPSEPLPLEDLFSDGTDFSPNAFIGGMNVRLTVL
RRTSLTSRRMILDDVRVLKPDVLVLCCSSHINSTFDLILNWDKILRNNFQ
KPRVWACLTNDGLEGDPATIDVKSAISAISPPDLRPKAHYFCSTDDNFSV
SFRSLAKDIVTMGRIARDEELANSIALEEARNLADHEAAGTLADHAAASL
VIANNGIGVPPSSHSSSNSSRANNNNSRHHHGVGRTFSLRGLRDRGNHHG
QGLSLSNFIVWNWFASSNES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR027417P-loop_NTPase