Gchil3936.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3936.t1
Unique NameGchil3936.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1484165..1485301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3936Gchil3936Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1484165..1485301 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3936.t1.stop1Gchil3936.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1484165..1484167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3936.t1.CDS1Gchil3936.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1484165..1485301 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3936.t1.exon1Gchil3936.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1484165..1485301 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3936.t1.start1Gchil3936.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1485299..1485301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3936.t1Gchil3936.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1484165..1485301 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3936.t1 ID=Gchil3936.t1|Name=Gchil3936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=379bp
MADLCHSHPVPPLLHLHRPNVYTRPELQRLPMAMRLSFVTPPPLAASPHV
KMLSDPHFTSFNIYPTTDTHVRLHRVLHTAANLGALPAPMLDSVFDQQVH
ALAFTPELFEFLATVTFEELQTAIIDFLGLLHHQLLWDADHAAVDSMHRE
LLPSVWQRVHAQIGFFEYGEPTSGRRSIVLEHLVQISFMTPWRVDVHAIF
TPSASSSDTALKPSSNMQAPSSLLLTKLVQDWILFDSLLKPIHCTPHEVV
EALERSIATSQSSHIFACIFTLLQSQFVAQLPPDVFDRLVAWLLRRSCER
LPPRQRRLASLRKLLAISSQRLQEVSFETSLSVSELLLQDEDDDSSVQDD
VLSTSEPQPSYPLDVLPWKRYRSVRRGL*
back to top

spliced messenger RNA

>Gchil3936.t1 ID=Gchil3936.t1|Name=Gchil3936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000010_pilon:1484165..1485301- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGACCTATGTCACTCCCATCCCGTCCCGCCTCTGCTTCATCTTCA
CCGCCCCAATGTCTACACCCGCCCCGAACTGCAGCGCTTGCCAATGGCCA
TGCGGCTGTCGTTCGTCACCCCGCCCCCGCTTGCCGCCTCACCGCATGTC
AAGATGCTTTCCGACCCTCATTTCACCAGCTTTAACATTTATCCTACCAC
AGACACCCACGTACGTCTGCATCGCGTCTTGCACACTGCTGCCAATCTGG
GTGCCCTGCCCGCCCCAATGCTAGACAGCGTCTTCGACCAACAGGTGCAT
GCCTTGGCGTTTACCCCGGAGCTGTTTGAATTTCTGGCCACCGTCACCTT
TGAAGAGCTACAGACCGCAATCATCGACTTTTTGGGGCTCCTGCATCACC
AATTGCTCTGGGATGCCGATCACGCCGCCGTCGACAGCATGCATCGCGAG
TTGCTACCGTCGGTATGGCAGCGCGTACACGCCCAGATTGGTTTCTTCGA
GTACGGAGAACCCACTAGTGGTCGTCGTTCCATCGTTCTGGAGCATCTCG
TACAGATTAGTTTCATGACTCCATGGCGCGTTGACGTGCATGCTATTTTT
ACACCCTCCGCTTCTTCTTCTGATACAGCGCTCAAGCCCAGCTCCAATAT
GCAAGCACCCTCCTCGTTGCTGCTCACTAAATTGGTGCAGGATTGGATTC
TTTTTGACTCTCTTCTCAAACCGATTCACTGCACCCCCCACGAAGTCGTC
GAAGCTCTGGAACGATCCATTGCAACCTCGCAGTCCTCTCACATTTTCGC
GTGTATCTTCACGTTGTTGCAGTCACAGTTTGTCGCACAACTACCGCCGG
ACGTCTTCGATCGTCTCGTCGCATGGCTTCTCCGCCGCAGTTGCGAGCGT
TTACCGCCCCGTCAGCGACGCCTAGCAAGCCTTCGCAAGCTTCTGGCCAT
AAGTTCGCAGCGCTTGCAAGAGGTGTCTTTCGAAACCTCCCTGTCAGTTT
CGGAGCTTTTGCTGCAGGACGAAGACGACGATAGCAGCGTTCAAGACGAC
GTTCTATCCACATCTGAGCCACAACCCTCCTACCCGTTGGACGTGCTCCC
TTGGAAGAGGTACCGCTCAGTGCGCCGTGGGTTGTGA
back to top

protein sequence of Gchil3936.t1

>Gchil3936.t1 ID=Gchil3936.t1|Name=Gchil3936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=379bp
MADLCHSHPVPPLLHLHRPNVYTRPELQRLPMAMRLSFVTPPPLAASPHV
KMLSDPHFTSFNIYPTTDTHVRLHRVLHTAANLGALPAPMLDSVFDQQVH
ALAFTPELFEFLATVTFEELQTAIIDFLGLLHHQLLWDADHAAVDSMHRE
LLPSVWQRVHAQIGFFEYGEPTSGRRSIVLEHLVQISFMTPWRVDVHAIF
TPSASSSDTALKPSSNMQAPSSLLLTKLVQDWILFDSLLKPIHCTPHEVV
EALERSIATSQSSHIFACIFTLLQSQFVAQLPPDVFDRLVAWLLRRSCER
LPPRQRRLASLRKLLAISSQRLQEVSFETSLSVSELLLQDEDDDSSVQDD
VLSTSEPQPSYPLDVLPWKRYRSVRRGL*
back to top

mRNA from alignment at tig00000010_pilon:1484165..1485301-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3936.t1 ID=Gchil3936.t1|Name=Gchil3936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000010_pilon:1484165..1485301- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGACCTATGTCACTCCCATCCCGTCCCGCCTCTGCTTCATCTTCA
CCGCCCCAATGTCTACACCCGCCCCGAACTGCAGCGCTTGCCAATGGCCA
TGCGGCTGTCGTTCGTCACCCCGCCCCCGCTTGCCGCCTCACCGCATGTC
AAGATGCTTTCCGACCCTCATTTCACCAGCTTTAACATTTATCCTACCAC
AGACACCCACGTACGTCTGCATCGCGTCTTGCACACTGCTGCCAATCTGG
GTGCCCTGCCCGCCCCAATGCTAGACAGCGTCTTCGACCAACAGGTGCAT
GCCTTGGCGTTTACCCCGGAGCTGTTTGAATTTCTGGCCACCGTCACCTT
TGAAGAGCTACAGACCGCAATCATCGACTTTTTGGGGCTCCTGCATCACC
AATTGCTCTGGGATGCCGATCACGCCGCCGTCGACAGCATGCATCGCGAG
TTGCTACCGTCGGTATGGCAGCGCGTACACGCCCAGATTGGTTTCTTCGA
GTACGGAGAACCCACTAGTGGTCGTCGTTCCATCGTTCTGGAGCATCTCG
TACAGATTAGTTTCATGACTCCATGGCGCGTTGACGTGCATGCTATTTTT
ACACCCTCCGCTTCTTCTTCTGATACAGCGCTCAAGCCCAGCTCCAATAT
GCAAGCACCCTCCTCGTTGCTGCTCACTAAATTGGTGCAGGATTGGATTC
TTTTTGACTCTCTTCTCAAACCGATTCACTGCACCCCCCACGAAGTCGTC
GAAGCTCTGGAACGATCCATTGCAACCTCGCAGTCCTCTCACATTTTCGC
GTGTATCTTCACGTTGTTGCAGTCACAGTTTGTCGCACAACTACCGCCGG
ACGTCTTCGATCGTCTCGTCGCATGGCTTCTCCGCCGCAGTTGCGAGCGT
TTACCGCCCCGTCAGCGACGCCTAGCAAGCCTTCGCAAGCTTCTGGCCAT
AAGTTCGCAGCGCTTGCAAGAGGTGTCTTTCGAAACCTCCCTGTCAGTTT
CGGAGCTTTTGCTGCAGGACGAAGACGACGATAGCAGCGTTCAAGACGAC
GTTCTATCCACATCTGAGCCACAACCCTCCTACCCGTTGGACGTGCTCCC
TTGGAAGAGGTACCGCTCAGTGCGCCGTGGGTTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000010_pilon:1484165..1485301-

>Gchil3936.t1 ID=Gchil3936.t1|Name=Gchil3936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000010_pilon:1484165..1485301- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGACCTATGTCACTCCCATCCCGTCCCGCCTCTGCTTCATCTTCA
CCGCCCCAATGTCTACACCCGCCCCGAACTGCAGCGCTTGCCAATGGCCA
TGCGGCTGTCGTTCGTCACCCCGCCCCCGCTTGCCGCCTCACCGCATGTC
AAGATGCTTTCCGACCCTCATTTCACCAGCTTTAACATTTATCCTACCAC
AGACACCCACGTACGTCTGCATCGCGTCTTGCACACTGCTGCCAATCTGG
GTGCCCTGCCCGCCCCAATGCTAGACAGCGTCTTCGACCAACAGGTGCAT
GCCTTGGCGTTTACCCCGGAGCTGTTTGAATTTCTGGCCACCGTCACCTT
TGAAGAGCTACAGACCGCAATCATCGACTTTTTGGGGCTCCTGCATCACC
AATTGCTCTGGGATGCCGATCACGCCGCCGTCGACAGCATGCATCGCGAG
TTGCTACCGTCGGTATGGCAGCGCGTACACGCCCAGATTGGTTTCTTCGA
GTACGGAGAACCCACTAGTGGTCGTCGTTCCATCGTTCTGGAGCATCTCG
TACAGATTAGTTTCATGACTCCATGGCGCGTTGACGTGCATGCTATTTTT
ACACCCTCCGCTTCTTCTTCTGATACAGCGCTCAAGCCCAGCTCCAATAT
GCAAGCACCCTCCTCGTTGCTGCTCACTAAATTGGTGCAGGATTGGATTC
TTTTTGACTCTCTTCTCAAACCGATTCACTGCACCCCCCACGAAGTCGTC
GAAGCTCTGGAACGATCCATTGCAACCTCGCAGTCCTCTCACATTTTCGC
GTGTATCTTCACGTTGTTGCAGTCACAGTTTGTCGCACAACTACCGCCGG
ACGTCTTCGATCGTCTCGTCGCATGGCTTCTCCGCCGCAGTTGCGAGCGT
TTACCGCCCCGTCAGCGACGCCTAGCAAGCCTTCGCAAGCTTCTGGCCAT
AAGTTCGCAGCGCTTGCAAGAGGTGTCTTTCGAAACCTCCCTGTCAGTTT
CGGAGCTTTTGCTGCAGGACGAAGACGACGATAGCAGCGTTCAAGACGAC
GTTCTATCCACATCTGAGCCACAACCCTCCTACCCGTTGGACGTGCTCCC
TTGGAAGAGGTACCGCTCAGTGCGCCGTGGGTTGTGA
back to top