Gchil8143.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8143.t1
Unique NameGchil8143.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length213
Homology
BLAST of Gchil8143.t1 vs. uniprot
Match: A0A2V3IPW2_9FLOR (Superoxide dismutase [Cu-Zn] n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPW2_9FLOR)

HSP 1 Score: 282 bits (722), Expect = 5.410e-94
Identity = 138/192 (71.88%), Postives = 155/192 (80.73%), Query Frame = 0
Query:   21 ASSAKIRSVSRQTVPTFSEQTCTTLPSLICNVQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGGVVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNPEVQSSA 212
            A S K+ S     VP+FSE TC+ LP+LICNVQPT GN VSG VY TP W  RS+DSQ+F CYTR+TAS++GL GP HGFH HTYGDLS+ DG STGGHFTNPAG D  HGYP +A RHWGDFGNL V  D GIAEYDR+DDVIRLGG+VGRSITIHAE+DKGV EQPSG +GSRVAYCVIGY+NP V + A
Sbjct:   30 ARSLKVTS-RHAVVPSFSESTCSALPTLICNVQPTDGNQVSGTVYLTPIWSQRSADSQSFACYTRVTASIAGLPGPKHGFHAHTYGDLSSADGKSTGGHFTNPAGTDAQHGYPGDATRHWGDFGNLHVGAD-GIAEYDRIDDVIRLGGMVGRSITIHAEDDKGVEEQPSGGAGSRVAYCVIGYANPAVVADA 219          
BLAST of Gchil8143.t1 vs. uniprot
Match: R7QQ00_CHOCR (Potential copper-zinc superoxide dismutase, CuZn SOD1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ00_CHOCR)

HSP 1 Score: 236 bits (601), Expect = 7.590e-76
Identity = 114/195 (58.46%), Postives = 144/195 (73.85%), Query Frame = 0
Query:   20 AASSAKIRSVSRQTVPTFSEQTCTTLPSLICNVQPTQGNTVSGAVYFTPAWVPRSSDSQA--FDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGGVVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNPEVQSSA 212
            AA  A +   +   VP F+++ C+ LP+L+C VQPT G +V G VYFTPAW  R    Q   F CY RI A+V+GL+ P HGFH+HTYGD+S  DGSSTGGHFTN AGD+I HG P++ +RHWGD GNL +++  G AEYDRVD V+RLG +VGR ITIH + D G SEQP+GASG+R+ +CVIGY+NPEV +SA
Sbjct:    7 AALLAAVSLAAAAEVPLFTQEGCSNLPTLVCTVQPTDGYSVEGVVYFTPAWRRRGVGEQPDLFTCYVRIMAAVAGLTNPQHGFHVHTYGDVSVSDGSSTGGHFTNVAGDEIEHGLPDDEIRHWGDLGNL-INDGKGNAEYDRVDKVVRLGALVGRGITIHEDQDAGSSEQPTGASGTRIGFCVIGYANPEVIASA 200          
BLAST of Gchil8143.t1 vs. uniprot
Match: A0A2V3IQ98_9FLOR (Superoxide dismutase [Cu-Zn] n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ98_9FLOR)

HSP 1 Score: 169 bits (429), Expect = 7.650e-50
Identity = 85/173 (49.13%), Postives = 115/173 (66.47%), Query Frame = 0
Query:   35 PTFSEQTCTTLPSLICNVQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGGVVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNPE 207
            P + ++ C + PSL C   PT G+ V+G+V F+P ++ ++       C+ RITA ++ LS   HGFHIHTYGD+ + DG STGGHF+NP+G    H  P +  RHWGDFG+L+   D G A YDRVD +I+L G+VGR + +HA  DKG   QPSG +GSR A CVIG +NP+
Sbjct:   22 PFYWKKPCLSQPSLTCYFTPTAGHNVTGSVQFSPLFMRKARSRNR--CFVRITAKLNNLSPGYHGFHIHTYGDIRSSDGKSTGGHFSNPSGIARQHALPGDWPRHWGDFGSLEAAGD-GTATYDRVDYIIKLRGIVGRGMIVHALEDKGKEAQPSGGAGSRQARCVIGIANPD 191          
BLAST of Gchil8143.t1 vs. uniprot
Match: R7QRY5_CHOCR (Potential copper-zinc superoxide dismutase, CuZn SOD2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRY5_CHOCR)

HSP 1 Score: 153 bits (386), Expect = 3.520e-42
Identity = 85/210 (40.48%), Postives = 119/210 (56.67%), Query Frame = 0
Query:    1 MPRFVRSLAVCCVLWQVTFAASSAKIRSVSRQTVPTFSEQT-CTTLPSLICNVQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGGVVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNPEVQ 209
            M  F+  LA+  ++  V+   +   + +    T     ++  C     L+CNV  T+G   +G V F P ++       +  C+ R+ A++ GLS   HGFHIHTYGD+   DGSSTGGHFTN  GDD+ HGY +   RH GD  N+ +    G A+Y R D+VIRLG + GR ITIH + D G   QPSGA+G RV  CVIG  + +++
Sbjct:    1 MASFLTPLALLTLVLAVSCMPAPTSVPTAGNSTAAMAEKRKRCLNSLPLVCNVVATKGYNCTGYVKFDPVFIMNRRGMPS--CHARVRANLKGLSPGRHGFHIHTYGDIRGLDGSSTGGHFTNVKGDDLPHGYASSPARHMGDLNNV-MARANGEAKYSREDNVIRLGAIRGRGITIHQDRDMGPGSQPSGAAGDRVGTCVIGVVDAKIE 207          
BLAST of Gchil8143.t1 vs. uniprot
Match: A0A2P8C975_9BACT (Cu-Zn family superoxide dismutase n=3 Tax=Prolixibacter TaxID=314318 RepID=A0A2P8C975_9BACT)

HSP 1 Score: 122 bits (305), Expect = 2.960e-31
Identity = 71/161 (44.10%), Postives = 100/161 (62.11%), Query Frame = 0
Query:   49 ICNVQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGG---VVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNP 206
            +C +QPT+GN V+G V FT             D   ++ A + GL+   HGFH+H YGD+SA DG+STGGHF NP  +++ HG P+  VRH GD GN+    D+    Y R+D +++L G   V+GR+I +HA  D  ++ QP+GA+GSRVA  VIG + P
Sbjct:   47 VCVLQPTEGNHVTGTVTFTKV-----------DGGVQVVADLEGLAPGKHGFHVHQYGDISAADGTSTGGHF-NP--ENVNHGGPDADVRHVGDLGNIVAAADS-TGHYQRIDKMVKLNGPHSVIGRAIIVHAGEDD-LTSQPTGAAGSRVAEGVIGIAKP 191          
BLAST of Gchil8143.t1 vs. uniprot
Match: A0A1I2HLG1_9BACT (Superoxide dismutase, Cu-Zn family n=2 Tax=Sunxiuqinia elliptica TaxID=655355 RepID=A0A1I2HLG1_9BACT)

HSP 1 Score: 122 bits (305), Expect = 4.430e-31
Identity = 77/162 (47.53%), Postives = 98/162 (60.49%), Query Frame = 0
Query:   49 ICNVQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGG---VVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNPE 207
            IC + PT GN V+G V FT +  P             + A+V GL+   HGFH+H YGD SA DG+S GGHF NP G D  HG P+  VRH GD GNL+ DE  G A Y  VD ++ L G   ++GRSI +HA  D  ++ QP+GA+G+RVAY VIG +  E
Sbjct:   61 ICVLHPTAGNEVTGIVTFTDS--PEG---------VVVEATVEGLTPGKHGFHVHHYGDCSAPDGTSAGGHF-NPDGTD--HGGPHAHVRHVGDLGNLEADE-NGKAHYRMVDKMLELNGAHSIIGRSIIVHAGEDD-LTSQPTGAAGARVAYGVIGVAKHE 206          
BLAST of Gchil8143.t1 vs. uniprot
Match: A0A3M2I604_9BACT (Superoxide dismutase family protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M2I604_9BACT)

HSP 1 Score: 120 bits (302), Expect = 5.660e-31
Identity = 72/158 (45.57%), Postives = 96/158 (60.76%), Query Frame = 0
Query:   52 VQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGG---VVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNP 206
            + PT+GN V+G VYFT             +   +I A V GL+   HGFHIH +GD S+ DG S GGHF NP G    HG P+ A RH GD GNL  D D G+A+Y+RVD  + L G   ++GR++ IH + D  ++ QP+GA+GSR+A  VIG + P
Sbjct:   36 LHPTEGNNVTGVVYFTQ-----------MENGVKIEAKVEGLTPGEHGFHIHEFGDCSSGDGKSAGGHF-NPEGK--SHGAPDAAERHVGDLGNLTAD-DAGVAKYERVDSHLSLNGPNSIIGRAVIIHEKADD-LTSQPTGAAGSRLACGVIGIARP 177          
BLAST of Gchil8143.t1 vs. uniprot
Match: A0A3M1B0W0_9BACT (Superoxide dismutase family protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1B0W0_9BACT)

HSP 1 Score: 118 bits (295), Expect = 7.870e-30
Identity = 72/162 (44.44%), Postives = 97/162 (59.88%), Query Frame = 0
Query:   49 ICNVQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGG---VVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNPE 207
            I  + PT+GN+V+G V FT             +   +I A V GL+   HGFHIH +GD SA +G+S GGHF NP  D++ H  P+   RH GD GNL+ DE  G A Y+RVD VI   G   ++GR + +HA  D  +  QP+GA+G+RVA  VIG +NP+
Sbjct:   40 IAVLHPTEGNSVTGVVTFTKV-----------EGGIKIVADVEGLTPGKHGFHIHQWGDCSAANGTSAGGHF-NP--DNVPHAGPDSPKRHVGDLGNLEADE-NGKAHYERVDTVIAFSGKHSIIGRGVIVHAGEDD-LKSQPTGAAGARVACGVIGIANPK 185          
BLAST of Gchil8143.t1 vs. uniprot
Match: A0A5S9C909_RHOMR (Superoxide dismutase [Cu-Zn] n=3 Tax=Rhodothermus marinus TaxID=29549 RepID=A0A5S9C909_RHOMR)

HSP 1 Score: 116 bits (291), Expect = 3.040e-29
Identity = 71/161 (44.10%), Postives = 97/161 (60.25%), Query Frame = 0
Query:   52 VQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGG---VVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNPEVQ 209
            + PT+GN V G V+FT     R+++        RI A+VSGL+   HGFHIH +GD SA D +S GGHF NP G    HG P+   RH GD GNL+  ED G+A Y RVD V+   G   ++GR++ +HA  D  ++ QP+G +G R+A  VIG + P  +
Sbjct:   40 LHPTEGNQVEGVVHFT-----RTAEG------IRIEATVSGLTPGRHGFHIHEWGDCSAPDATSAGGHF-NPTGQ--PHGAPDSPARHVGDLGNLEAGED-GMASYSRVDTVVAFSGPRSIIGRAVIVHAAEDD-LASQPTGNAGGRLACGVIGIAAPATE 184          
BLAST of Gchil8143.t1 vs. uniprot
Match: A0A1M6WAU8_9BACT (Superoxide dismutase [Cu-Zn] n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6WAU8_9BACT)

HSP 1 Score: 116 bits (291), Expect = 3.290e-29
Identity = 71/158 (44.94%), Postives = 97/158 (61.39%), Query Frame = 0
Query:   52 VQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGFHIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDEDTGIAEYDRVDDVIRLGG---VVGRSITIHAENDKGVSEQPSGASGSRVAYCVIGYSNP 206
            + PT+G+ V G VYFT      +++        RI A+VSGL+   HGFHIH +GD SA D +S GGHF NP   D  HG P++A RH GD GNL+ DE  G+A Y RVD V+   G   ++GR++ +HA  D  ++ QP+G +G R+A  VIG + P
Sbjct:   43 LHPTEGSQVEGVVYFT-----ETAEG------IRIEATVSGLTPGRHGFHIHAWGDCSAPDATSAGGHF-NPT--DQPHGGPDQAARHVGDLGNLEADE-QGMAHYSRVDTVVAFHGPRAIIGRAVIVHAAEDD-LTSQPTGNAGGRLACGVIGVAAP 184          
The following BLAST results are available for this feature:
BLAST of Gchil8143.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPW2_9FLOR5.410e-9471.88Superoxide dismutase [Cu-Zn] n=1 Tax=Gracilariopsi... [more]
R7QQ00_CHOCR7.590e-7658.46Potential copper-zinc superoxide dismutase, CuZn S... [more]
A0A2V3IQ98_9FLOR7.650e-5049.13Superoxide dismutase [Cu-Zn] n=1 Tax=Gracilariopsi... [more]
R7QRY5_CHOCR3.520e-4240.48Potential copper-zinc superoxide dismutase, CuZn S... [more]
A0A2P8C975_9BACT2.960e-3144.10Cu-Zn family superoxide dismutase n=3 Tax=Prolixib... [more]
A0A1I2HLG1_9BACT4.430e-3147.53Superoxide dismutase, Cu-Zn family n=2 Tax=Sunxiuq... [more]
A0A3M2I604_9BACT5.660e-3145.57Superoxide dismutase family protein n=1 Tax=Caldit... [more]
A0A3M1B0W0_9BACT7.870e-3044.44Superoxide dismutase family protein n=1 Tax=Caldit... [more]
A0A5S9C909_RHOMR3.040e-2944.10Superoxide dismutase [Cu-Zn] n=3 Tax=Rhodothermus ... [more]
A0A1M6WAU8_9BACT3.290e-2944.94Superoxide dismutase [Cu-Zn] n=1 Tax=Rhodothermus ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 81..201
e-value: 1.2E-26
score: 93.8
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3D2.60.40.200Superoxide dismutase, copper/zinc binding domaincoord: 39..201
e-value: 2.4E-34
score: 120.6
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 50..202
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 17..206
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 99..109
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..212
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:187559..188197 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8143.t1Gchil8143.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 187559..188197 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8143.t1 ID=Gchil8143.t1|Name=Gchil8143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=213bp
MPRFVRSLAVCCVLWQVTFAASSAKIRSVSRQTVPTFSEQTCTTLPSLIC
NVQPTQGNTVSGAVYFTPAWVPRSSDSQAFDCYTRITASVSGLSGPSHGF
HIHTYGDLSADDGSSTGGHFTNPAGDDIMHGYPNEAVRHWGDFGNLDVDE
DTGIAEYDRVDDVIRLGGVVGRSITIHAENDKGVSEQPSGASGSRVAYCV
IGYSNPEVQSSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001424SOD_Cu_Zn_dom
IPR036423SOD-like_Cu/Zn_dom_sf
IPR024134SOD_Cu/Zn_/chaperone
IPR018152SOD_Cu/Zn_BS