Gchil8237.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8237.t1
Unique NameGchil8237.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length402
Homology
[Close]
BLAST of Gchil8237.t1 vs. uniprot
Match: A0A2V3IQN8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQN8_9FLOR)

HSP 1 Score: 185 bits (470), Expect = 1.940e-51
Identity = 115/180 (63.89%), Postives = 129/180 (71.67%), Query Frame = 0 
Query:  220 AQQSKLSTAAIIAISAVGGAAVLVLVTLTLIIVYRRLPSKNNSYYRFEDPDLVNQSQQPAPDAGAPPDSHXXXXXXXXXXXXPHNXXHSSPAEQVAPLSPSPPRADRADNSNIYANMPGPTAPSASQFSRRESDASSASSDTIVAPVYPHGLANANNSSAAAPWFHTAHKHSPDAQTYHL 399
            A  S LST AIIAI+  GG  V++LV L+L I+Y+R PS +NSYYRFEDPDL++Q Q P+    A PD   XXXXXXXX           P+  + PLSP P   DR DNSNIYA MPGPTAPSASQFSRRESDASSASSDTIVAPVYP+ L NAN+SS AAPWFH AHK  P   TYHL
Sbjct:  187 ASSSALSTPAIIAIAVGGGVTVVILVALSLFILYKRRPSSDNSYYRFEDPDLLDQ-QHPS----AAPDPSNXXXXXXXXHPSQRRPASQQPSNYIEPLSPPPAADDRPDNSNIYAAMPGPTAPSASQFSRRESDASSASSDTIVAPVYPNALGNANSSSVAAPWFHPAHKQQPTPTTYHL 361
The following BLAST results are available for this feature:
BLAST of Gchil8237.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQN8_9FLOR1.940e-5163.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..401
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 333..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..224
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 254..401
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 228..253
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..227
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 35..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availableTMHMMTMhelixcoord: 230..252
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:836236..837441 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8237.t1Gchil8237.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 836236..837441 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8237.t1 ID=Gchil8237.t1|Name=Gchil8237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MRVLVSRARASPLRVLLLRAIAIVVVAVAAAAAVAAAAAAPPRRAAVRVA
VAVAARQAAEPSAPPLQQPAASSPPDASPSPPPPPVATPLATPLATPPAE
SPPDPAASPPPVTPPSSPSPDAQPVTAPAPQTPVPADSSGPAVSSGPDPS
AVANVNASPNNPTAPPNNPTAPPNNPTAPPNNPTAPPSNPTAPPSSSTSS
PSEPAAANNSSTAASVKEHAQQSKLSTAAIIAISAVGGAAVLVLVTLTLI
IVYRRLPSKNNSYYRFEDPDLVNQSQQPAPDAGAPPDSHAPPPHSSQPSD
APHNPDHSSPAEQVAPLSPSPPRADRADNSNIYANMPGPTAPSASQFSRR
ESDASSASSDTIVAPVYPHGLANANNSSAAAPWFHTAHKHSPDAQTYHLH
A*
back to top