Gchil8237.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8237.t1
Unique NameGchil8237.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:836236..837441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8237Gchil8237Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 836236..837441 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8237.t1.start1Gchil8237.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 836236..836238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8237.t1.CDS1Gchil8237.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 836236..837441 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8237.t1.exon1Gchil8237.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 836236..837441 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8237.t1.stop1Gchil8237.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 837439..837441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8237.t1Gchil8237.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 836236..837441 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8237.t1 ID=Gchil8237.t1|Name=Gchil8237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp
MRVLVSRARASPLRVLLLRAIAIVVVAVAAAAAVAAAAAAPPRRAAVRVA
VAVAARQAAEPSAPPLQQPAASSPPDASPSPPPPPVATPLATPLATPPAE
SPPDPAASPPPVTPPSSPSPDAQPVTAPAPQTPVPADSSGPAVSSGPDPS
AVANVNASPNNPTAPPNNPTAPPNNPTAPPNNPTAPPSNPTAPPSSSTSS
PSEPAAANNSSTAASVKEHAQQSKLSTAAIIAISAVGGAAVLVLVTLTLI
IVYRRLPSKNNSYYRFEDPDLVNQSQQPAPDAGAPPDSHAPPPHSSQPSD
APHNPDHSSPAEQVAPLSPSPPRADRADNSNIYANMPGPTAPSASQFSRR
ESDASSASSDTIVAPVYPHGLANANNSSAAAPWFHTAHKHSPDAQTYHLH
A*
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spliced messenger RNA

>Gchil8237.t1 ID=Gchil8237.t1|Name=Gchil8237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004384_pilon:836236..837441+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTCTTGGTCAGCCGCGCGCGCGCGTCGCCGCTGCGAGTGCTGCT
GCTGCGCGCCATCGCCATCGTCGTCGTcgccgtcgccgccgccgccgctg
tcgccgccgccgccgccgcgccgccTCGTCGCGCCGCCGTGCGCGTGGCA
GTGGCCGTGGCCGCCCGCCAGGCGGCCGAGCCGTCTGCGCCGCCGCTGCA
GCAGCCCGCCGCTTCGTCGCCGCCCGACGCGTCCCCGTCGCCGCCGCCGC
CGCCCGTCGCCACCCCGCTCGCCACCCCGCTCGCCACTCCGCCCGCCGAG
TCGCCGCCTGACCCCGCTGCGTCGCCGCCGCCCGTCACCCCGCCTTCCTC
GCCGTCGCCCGACGCGCAGCCCGTCACCGCGCCCGCGCCGCAGACCCCCG
TCCCCGCCGACTCCTCCGGCCCTGCCGTCTCCTCCGGCCCCGATCCGTCT
GCCGTCGCCAACGTCAACGCCTCGCCCAACAATCCCACTGCTCCGCCCAA
CAATCCCACTGCTCCGCCCAACAATCCCACTGCTCCGCCCAACAATCCCA
CCGCCCCGCCCTCCAATCCCACCGCCCCGCCCTCCTCGTCCACGTCGTCG
CCGTCCGAGCCCGCCGCCGCGAACAACAGCTCCACCGCCGCCTCGGTCAA
GGAGCATGCGCAGCAGTCCAAGCTCTCCACCGCCGCCATCATCGCCATCA
GCGCTGTCGGCGGCGCCGCTGTGTTGGTGCTCGTCACCCTCACCCTCATC
ATTGTGTACCGTCGTCTACCGTCCAAGAATAACTCTTACTATCGTTTTGA
GGACCCCGACCTCGTTAATCAATCGCAGCAACCCGCGCCCGACGCGGGCG
CCCCGCCCGATTCGCACGCTCCTCCGCCTCATTCGTCCCAACCCTCGGAC
GCCCCACACAACCCCGACCACTCCTCCCCTGCCGAACAAGTCGCACCCCT
ATCGCCGTCGCCGCCGCGCGCAGATCGCGCGGACAACTCCAACATATACG
CCAACATGCCCGGCCCAACCGCCCCGTCCGCCTCTCAGTTTTCGAGAAGA
GAGTCTGATGCTTCGTCTGCCAGCAGTGACACCATTGTCGCACCTGTGTA
CCCGCACGGCTTGGCTAACGCAAACAACTCCAGTGCCGCTGCTCCGTGGT
TCCATACTGCACATAAACACTCGCCCGACGCCCAAACGTACCACCTGCAC
GCGTAA
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protein sequence of Gchil8237.t1

>Gchil8237.t1 ID=Gchil8237.t1|Name=Gchil8237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MRVLVSRARASPLRVLLLRAIAIVVVAVAAAAAVAAAAAAPPRRAAVRVA
VAVAARQAAEPSAPPLQQPAASSPPDASPSPPPPPVATPLATPLATPPAE
SPPDPAASPPPVTPPSSPSPDAQPVTAPAPQTPVPADSSGPAVSSGPDPS
AVANVNASPNNPTAPPNNPTAPPNNPTAPPNNPTAPPSNPTAPPSSSTSS
PSEPAAANNSSTAASVKEHAQQSKLSTAAIIAISAVGGAAVLVLVTLTLI
IVYRRLPSKNNSYYRFEDPDLVNQSQQPAPDAGAPPDSHAPPPHSSQPSD
APHNPDHSSPAEQVAPLSPSPPRADRADNSNIYANMPGPTAPSASQFSRR
ESDASSASSDTIVAPVYPHGLANANNSSAAAPWFHTAHKHSPDAQTYHLH
A*
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mRNA from alignment at tig00004384_pilon:836236..837441+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8237.t1 ID=Gchil8237.t1|Name=Gchil8237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004384_pilon:836236..837441+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTCTTGGTCAGCCGCGCGCGCGCGTCGCCGCTGCGAGTGCTGCT
GCTGCGCGCCATCGCCATCGTCGTCGTcgccgtcgccgccgccgccgctg
tcgccgccgccgccgccgcgccgccTCGTCGCGCCGCCGTGCGCGTGGCA
GTGGCCGTGGCCGCCCGCCAGGCGGCCGAGCCGTCTGCGCCGCCGCTGCA
GCAGCCCGCCGCTTCGTCGCCGCCCGACGCGTCCCCGTCGCCGCCGCCGC
CGCCCGTCGCCACCCCGCTCGCCACCCCGCTCGCCACTCCGCCCGCCGAG
TCGCCGCCTGACCCCGCTGCGTCGCCGCCGCCCGTCACCCCGCCTTCCTC
GCCGTCGCCCGACGCGCAGCCCGTCACCGCGCCCGCGCCGCAGACCCCCG
TCCCCGCCGACTCCTCCGGCCCTGCCGTCTCCTCCGGCCCCGATCCGTCT
GCCGTCGCCAACGTCAACGCCTCGCCCAACAATCCCACTGCTCCGCCCAA
CAATCCCACTGCTCCGCCCAACAATCCCACTGCTCCGCCCAACAATCCCA
CCGCCCCGCCCTCCAATCCCACCGCCCCGCCCTCCTCGTCCACGTCGTCG
CCGTCCGAGCCCGCCGCCGCGAACAACAGCTCCACCGCCGCCTCGGTCAA
GGAGCATGCGCAGCAGTCCAAGCTCTCCACCGCCGCCATCATCGCCATCA
GCGCTGTCGGCGGCGCCGCTGTGTTGGTGCTCGTCACCCTCACCCTCATC
ATTGTGTACCGTCGTCTACCGTCCAAGAATAACTCTTACTATCGTTTTGA
GGACCCCGACCTCGTTAATCAATCGCAGCAACCCGCGCCCGACGCGGGCG
CCCCGCCCGATTCGCACGCTCCTCCGCCTCATTCGTCCCAACCCTCGGAC
GCCCCACACAACCCCGACCACTCCTCCCCTGCCGAACAAGTCGCACCCCT
ATCGCCGTCGCCGCCGCGCGCAGATCGCGCGGACAACTCCAACATATACG
CCAACATGCCCGGCCCAACCGCCCCGTCCGCCTCTCAGTTTTCGAGAAGA
GAGTCTGATGCTTCGTCTGCCAGCAGTGACACCATTGTCGCACCTGTGTA
CCCGCACGGCTTGGCTAACGCAAACAACTCCAGTGCCGCTGCTCCGTGGT
TCCATACTGCACATAAACACTCGCCCGACGCCCAAACGTACCACCTGCAC
GCGTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:836236..837441+

>Gchil8237.t1 ID=Gchil8237.t1|Name=Gchil8237.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00004384_pilon:836236..837441+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTCTTGGTCAGCCGCGCGCGCGCGTCGCCGCTGCGAGTGCTGCT
GCTGCGCGCCATCGCCATCGTCGTCGTcgccgtcgccgccgccgccgctg
tcgccgccgccgccgccgcgccgccTCGTCGCGCCGCCGTGCGCGTGGCA
GTGGCCGTGGCCGCCCGCCAGGCGGCCGAGCCGTCTGCGCCGCCGCTGCA
GCAGCCCGCCGCTTCGTCGCCGCCCGACGCGTCCCCGTCGCCGCCGCCGC
CGCCCGTCGCCACCCCGCTCGCCACCCCGCTCGCCACTCCGCCCGCCGAG
TCGCCGCCTGACCCCGCTGCGTCGCCGCCGCCCGTCACCCCGCCTTCCTC
GCCGTCGCCCGACGCGCAGCCCGTCACCGCGCCCGCGCCGCAGACCCCCG
TCCCCGCCGACTCCTCCGGCCCTGCCGTCTCCTCCGGCCCCGATCCGTCT
GCCGTCGCCAACGTCAACGCCTCGCCCAACAATCCCACTGCTCCGCCCAA
CAATCCCACTGCTCCGCCCAACAATCCCACTGCTCCGCCCAACAATCCCA
CCGCCCCGCCCTCCAATCCCACCGCCCCGCCCTCCTCGTCCACGTCGTCG
CCGTCCGAGCCCGCCGCCGCGAACAACAGCTCCACCGCCGCCTCGGTCAA
GGAGCATGCGCAGCAGTCCAAGCTCTCCACCGCCGCCATCATCGCCATCA
GCGCTGTCGGCGGCGCCGCTGTGTTGGTGCTCGTCACCCTCACCCTCATC
ATTGTGTACCGTCGTCTACCGTCCAAGAATAACTCTTACTATCGTTTTGA
GGACCCCGACCTCGTTAATCAATCGCAGCAACCCGCGCCCGACGCGGGCG
CCCCGCCCGATTCGCACGCTCCTCCGCCTCATTCGTCCCAACCCTCGGAC
GCCCCACACAACCCCGACCACTCCTCCCCTGCCGAACAAGTCGCACCCCT
ATCGCCGTCGCCGCCGCGCGCAGATCGCGCGGACAACTCCAACATATACG
CCAACATGCCCGGCCCAACCGCCCCGTCCGCCTCTCAGTTTTCGAGAAGA
GAGTCTGATGCTTCGTCTGCCAGCAGTGACACCATTGTCGCACCTGTGTA
CCCGCACGGCTTGGCTAACGCAAACAACTCCAGTGCCGCTGCTCCGTGGT
TCCATACTGCACATAAACACTCGCCCGACGCCCAAACGTACCACCTGCAC
GCGTAA
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