Gchil8226.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8226.t1
Unique NameGchil8226.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length396
Homology
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BLAST of Gchil8226.t1 vs. uniprot
Match: A0A2V3IQP7_9FLOR (HTH myb-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQP7_9FLOR)

HSP 1 Score: 213 bits (541), Expect = 3.120e-62
Identity = 136/214 (63.55%), Postives = 161/214 (75.23%), Query Frame = 0 
Query:    1 MDTSQHTRFLASPLAIA-ASPELRANAAANASRIRELEGILHTKRRELERLHCAKRLRSRSISPPLSASSTPITSSPRSIDYIKQTP-REMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAAKAQQEAVRAFAAAQLNAXXXXXXXXXXXXANRPFGMGIRSLIGESKKTEPRLAPIMPADFRTTASV 212
            M+ SQH+  +  P A+  A+  LRA+A ANA+RIR+LE ++ ++RREL RL   KR RS +  P     S    SSPR+IDY+  +P REMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAAKAQQEAVRAFA AQLNAXXXXXXXXX   A + FG+ + + +   ++ E +LA IMPA  R+   V
Sbjct:    1 MEVSQHSPLVPDPTAVVTATAHLRAHAEANATRIRQLESMIRSERRELARLLGTKRTRSSTPPPSQCTPSASPVSSPRTIDYVNHSPTREMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAAKAQQEAVRAFATAQLNAXXXXXXXXX---AKQSFGLPVHT-VQHKRRAEHKLAHIMPAGMRSAGGV 210
The following BLAST results are available for this feature:
BLAST of Gchil8226.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQP7_9FLOR3.120e-6263.55HTH myb-type domain-containing protein n=1 Tax=Gra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 92..141
e-value: 2.0E-6
score: 37.3
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 96..138
e-value: 7.15024E-7
score: 43.7182
NoneNo IPR availableGENE3D1.10.10.60coord: 94..144
e-value: 5.5E-8
score: 34.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..328
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..328
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 95..138
e-value: 6.9E-6
score: 26.2
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 88..143
score: 10.527182
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 95..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:737139..738326 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8226.t1Gchil8226.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 737139..738326 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8226.t1 ID=Gchil8226.t1|Name=Gchil8226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=396bp
MDTSQHTRFLASPLAIAASPELRANAAANASRIRELEGILHTKRRELERL
HCAKRLRSRSISPPLSASSTPITSSPRSIDYIKQTPREMAARGSHWSFAE
KARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAAKAQQ
EAVRAFAAAQLNAAAAAAAAVATATANRPFGMGIRSLIGESKKTEPRLAP
IMPADFRTTASVHLRSPSTSSLPRSVSGADGQDVNYVSTFNKAKWMPDCA
PDSALDNALDCALDCAPDSVPAHVGDCAPTVVPDGTPDFDADIADCDQVT
DGDSGGTEMSMVDSGSNDGSNDDSNDESTACAFFGADVEQQDGLADMMGA
AVELRCADGDAPFDCAMLEGGGTEWKLTDGFDEGVLEDGLLQAAF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf