Gchil8178.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8178.t1
Unique NameGchil8178.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:478868..479516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003292201.1
PFAMsPEN-2
Max annot lvl554915|Amoebozoa
KEGG koko:K06170
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0070765,GO:0071944,GO:0098796,GO:0098797
Evalue5.92e-06
EggNOG OGsKOG3402@1|root,KOG3402@2759|Eukaryota,3XHY6@554915|Amoebozoa
DescriptionPresenilin enhancer-2 subunit of gamma secretase
COG categoryU
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8178Gchil8178Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 478868..479516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8178.t1Gchil8178.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 478868..479516 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8178.t1.stop1Gchil8178.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 478868..478870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8178.t1.CDS1Gchil8178.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 478868..479007 -
Gchil8178.t1.CDS2Gchil8178.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 479084..479516 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8178.t1.exon1Gchil8178.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 478868..479007 -
Gchil8178.t1.exon2Gchil8178.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 479084..479516 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8178.t1.intron1Gchil8178.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 479008..479083 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8178.t1.start1Gchil8178.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 479514..479516 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8178.t1 ID=Gchil8178.t1|Name=Gchil8178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=191bp
MPPPRPEDTVDLSLEPPVHPEHPSMTQASHEDPHPPHATGHAPWQRDGAS
HAPPTDPESKAKAEKWSRHKNDDKHSREQRRKERAAERQRRKEEEERLRI
ERLENNARRMYIAGFFALPLVWLVALIYFREEHKDENGNQRIKEYYRGAR
FWFFIYTLAFVTWFIVFQVKANTFSNINIVKFSGTSPSGI*
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spliced messenger RNA

>Gchil8178.t1 ID=Gchil8178.t1|Name=Gchil8178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00004384_pilon:478868..479516- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGCCGCGCCCTGAGGACACGGTCGACCTCTCCTTGGAGCCACC
CGTCCATCCCGAACACCCCTCAATGACGCAGGCGTCGCACGAAGATCCCC
ACCCGCCCCACGCCACCGGCCATGCGCCTTGGCAGCGAGACGGCGCTTCG
CACGCGCCGCCCACCGACCCAGAGTCCAAGGCCAAGGCAGAGAAGTGGAG
TCGCCACAAAAACGACGACAAGCACTCCCGAGAGCAGCGCCGGAAGGAGC
GTGCGGCCGAGCGTCAGCGACGGAAGGAGGAAGAGGAACGCTTGCGCATC
GAGCGATTGGAGAATAATGCCAGACGCATGTATATTGCCGGCTTTTTTGC
CTTGCCTCTTGTTTGGCTAGTTGCTTTGATTTACTTTCGGGAAGAACATA
AAGACGAGAATGGTAATCAACGTATAAAAGAATACTATCGAGGAGCTCGC
TTTTGGTTTTTCATATACACCCTGGCGTTTGTCACATGGTTCATCGTATT
CCAAGTGAAAGCAAACACTTTTTCAAACATAAACATCGTCAAATTCAGCG
GAACCAGTCCGTCAGGAATCTAA
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protein sequence of Gchil8178.t1

>Gchil8178.t1 ID=Gchil8178.t1|Name=Gchil8178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=191bp
MPPPRPEDTVDLSLEPPVHPEHPSMTQASHEDPHPPHATGHAPWQRDGAS
HAPPTDPESKAKAEKWSRHKNDDKHSREQRRKERAAERQRRKEEEERLRI
ERLENNARRMYIAGFFALPLVWLVALIYFREEHKDENGNQRIKEYYRGAR
FWFFIYTLAFVTWFIVFQVKANTFSNINIVKFSGTSPSGI*
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mRNA from alignment at tig00004384_pilon:478868..479516-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8178.t1 ID=Gchil8178.t1|Name=Gchil8178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=649bp|location=Sequence derived from alignment at tig00004384_pilon:478868..479516- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCGCCGCGCCCTGAGGACACGGTCGACCTCTCCTTGGAGCCACC
CGTCCATCCCGAACACCCCTCAATGACGCAGGCGTCGCACGAAGATCCCC
ACCCGCCCCACGCCACCGGCCATGCGCCTTGGCAGCGAGACGGCGCTTCG
CACGCGCCGCCCACCGACCCAGAGTCCAAGGCCAAGGCAGAGAAGTGGAG
TCGCCACAAAAACGACGACAAGCACTCCCGAGAGCAGCGCCGGAAGGAGC
GTGCGGCCGAGCGTCAGCGACGGAAGGAGGAAGAGGAACGCTTGCGCATC
GAGCGATTGGAGAATAATGCCAGACGCATGTATATTGCCGGCTTTTTTGC
CTTGCCTCTTGTTTGGCTAGTTGCTTTGATTTACTTTCGGGAAGAACATA
AAGACGAGAATGGTAATCAACGTATAAAAGAATGTACGTGCCCTCCACTT
TTTGTCACGCGTATGAACGAATGTTTTTGCTGACCTCATTGTTGTCGTCT
TGCGTTCAGACTATCGAGGAGCTCGCTTTTGGTTTTTCATATACACCCTG
GCGTTTGTCACATGGTTCATCGTATTCCAAGTGAAAGCAAACACTTTTTC
AAACATAAACATCGTCAAATTCAGCGGAACCAGTCCGTCAGGAATCTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:478868..479516-

>Gchil8178.t1 ID=Gchil8178.t1|Name=Gchil8178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00004384_pilon:478868..479516- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCGCCGCGCCCTGAGGACACGGTCGACCTCTCCTTGGAGCCACC
CGTCCATCCCGAACACCCCTCAATGACGCAGGCGTCGCACGAAGATCCCC
ACCCGCCCCACGCCACCGGCCATGCGCCTTGGCAGCGAGACGGCGCTTCG
CACGCGCCGCCCACCGACCCAGAGTCCAAGGCCAAGGCAGAGAAGTGGAG
TCGCCACAAAAACGACGACAAGCACTCCCGAGAGCAGCGCCGGAAGGAGC
GTGCGGCCGAGCGTCAGCGACGGAAGGAGGAAGAGGAACGCTTGCGCATC
GAGCGATTGGAGAATAATGCCAGACGCATGTATATTGCCGGCTTTTTTGC
CTTGCCTCTTGTTTGGCTAGTTGCTTTGATTTACTTTCGGGAAGAACATA
AAGACGAGAATGGTAATCAACGTATAAAAGAATACTATCGAGGAGCTCGC
TTTTGGTTTTTCATATACACCCTGGCGTTTGTCACATGGTTCATCGTATT
CCAAGTGAAAGCAAACACTTTTTCAAACATAAACATCGTCAAATTCAGCG
GAACCAGTCCGTCAGGAATCTAA
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