Gchil8228.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8228.t1
Unique NameGchil8228.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length390
Homology
BLAST of Gchil8228.t1 vs. uniprot
Match: A0A2V3IQR8_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR8_9FLOR)

HSP 1 Score: 366 bits (940), Expect = 9.730e-122
Identity = 178/265 (67.17%), Postives = 218/265 (82.26%), Query Frame = 0
Query:  125 PTEVTAQPENQSVTSGHASPTQQRRNHHNTHTRRCRARLNNRFDTLNNMLPRSPTVEVKHKVHILDHAVSALQHMHQENANLELFLAMRSKHKLVAWVDSYVISATTVQAALSPLIDLISQTGSWPYAEVWRTDPPNMSLVHTKLRGSSMQYPALSTLARFSAAQHQFPIASDFTGRSFETRAPFWTSSPTQLCQVVNRAQLMAAARLRCAFSVPVPVAGEIPFVLSFYDVRQRDRDAAQLHSAAFAAVCVGNAWAAKQADAVAS 389
            PT +T  PENQS+TSGHASPTQQRRNHHNTHTRRCRARLN RFDTLNN+LPRSPTVEVKHKVHILDHA++ALQ MHQ+NANL+L LA+RS+ +LV WVDS+V +A+++Q AL P I L+  T +WPYAEVW   PP+++L+HT  R ++M +PAL+ LA  SAAQ Q   A DF G+ FETR P W+ SP Q CQV  RAQL+AAAR++CAF+VP+PVAG++  V++F+DVRQR+RD  Q+  AAFAAVCVGNAWAAKQA A+AS
Sbjct:  124 PTIITNNPENQSITSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNNILPRSPTVEVKHKVHILDHAITALQEMHQQNANLQLLLALRSRPRLVKWVDSFVPTASSIQQALDPFISLVCHTAAWPYAEVWHAQPPHINLIHTSPRATTMHFPALNHLAHVSAAQTQLCFADDFVGKCFETRVPRWSCSPVQQCQVAQRAQLLAAARIQCAFAVPIPVAGDVSHVVAFFDVRQRERDTTQVQFAAFAAVCVGNAWAAKQASALAS 388          
BLAST of Gchil8228.t1 vs. uniprot
Match: R7QJ09_CHOCR (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ09_CHOCR)

HSP 1 Score: 105 bits (261), Expect = 6.240e-22
Identity = 86/267 (32.21%), Postives = 120/267 (44.94%), Query Frame = 0
Query:  152 HNTHTRRCRARLNNRFDTLNNMLPRSPT-VEVKHKVHILDHAVSALQHMHQENANLELFLAMRSKHKLVAWVDSYVISATTVQAALSPLIDLISQTGSWPYAEVWR------------------TDPPNMSLVHTKLRGSSMQY---------------PALST-LARF--SAAQHQFPIASDFTGRSFETRAPFWTSSPTQLCQVVNRAQLMAAARLRCAFSVPVPVAGEIPFVLSFYDVRQRDRDAAQLHSAAFAAVCVGNAWAA 381
            HN+HTRRCRA++N +F  L ++LP  P    +KHK  ILD+A+   + +H     LE  LA+ S+ +L AWVD  V+ + ++Q AL+P + LI   G W Y+E W                   +   N+    T L G + +                P L T L RF   +  +Q     D  GR   T  P W  S     +   RA L   A L   F VPV + G I  V  F+D  QR  DA  +  A   +  +GNA+ A
Sbjct:   44 HNSHTRRCRAKVNLKFQELLSILPTPPPKTGIKHKAQILDYAIRVYRDIHARKTLLEAELALSSRSQLNAWVDGIVLRSISLQDALAPYLSLICTKGGWKYSEAWIPAQQPIPSQPVRGKVEAVSGESNVLTPTTLLSGPTARLRLGLAVIPSLGNTDDPDLQTKLERFRDKSRAYQCKARVDLPGRVMCTMRPEWLPSLNDQ-EAFQRAHLAHNANLVVCFGVPVFICGHIAAVAVFFDTDQRAYDAKCVDLADNISGLLGNAFGA 309          
BLAST of Gchil8228.t1 vs. uniprot
Match: A0A7S1TET1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET1_9RHOD)

HSP 1 Score: 104 bits (260), Expect = 7.560e-21
Identity = 77/257 (29.96%), Postives = 120/257 (46.69%), Query Frame = 0
Query:  152 HNTHTRRCRARLNNRFDTLNNMLPRSPT-VEVKHKVHILDHAVSALQHMHQENANLELFLAMRSKHKLVAWVDSYVISATTVQAALSPLIDLISQTGSWPYAEVW---------------RTDPPNMSLVHTKLRGSSMQYPALS-TLARF--SAAQHQFPIASDFTGRSFETRAPFWTSSPTQLCQVVNRAQLMAAARLRCAFSVPVPVAGEIPFVLSFYDVRQRDRDAAQLHSAAFAAVCVGNAWAAKQADAVAS 389
            H +HTRRCR ++N +F TL N LP  PT  E+KHK  ILD+++  L+ +    A LE  LA+ ++  L+ WVD  V  A     A++P + ++    +W  AE+W                  P  + L+      +  Q P     +  F   + + +F       GR + T  P W    +   QV  RA+L + A L    S+P  + G +  V+  YD  +R+ D   L  A   A+ +GNA+ A+   AVA+
Sbjct:  267 HKSHTRRCREKVNEKFQTLMNELPPPPTGTEIKHKAQILDYSIRVLKDLASRKAALESELALSNRRNLLGWVDRVVNDAEDFPDAINPFLKMMCSKKAWKCAELWVPVEERVMVSCPLPQSETPTRLKLLRASFHENLEQDPPRHHRIHEFIDESRRFKFTPTCGSPGRVYSTMRPEWLHDLSDE-QVFPRAELASKAGLVTCLSIPFLINGRVRGVVCLYDDEKRECDMGDLDLAFDIAILIGNAFGARGNRAVAA 522          
BLAST of Gchil8228.t1 vs. uniprot
Match: A0A1X6PIG4_PORUM (BHLH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIG4_PORUM)

HSP 1 Score: 85.9 bits (211), Expect = 1.820e-14
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 0
Query:  136 SVTSGHASPTQQRRNHHNTHTRRCRARLNNRFDTLNNMLPRSP-TVEVKHKVHILDHAVSALQHMHQENANLELFLAMRSKHKLVAWVDSYVISATTVQAALSPLIDLISQTGSWPYAEVWRTDP 259
            SV S  A     R++ HN+HTR+CRA++N +FD L  +LP  P + +VKHK  ILD+ +   + +      LE  LA+ ++  L AWVD+ V S+ T+  AL P + LI+    + YAE+W   P
Sbjct:  327 SVVSTEAGVRGMRKDVHNSHTRKCRAKVNTKFDELLTLLPPHPDSFQVKHKAQILDYTIHMYKRIQARKNQLEAELALSTRANLAAWVDTVVASSRTLPEALRPYLHLIAVQKRFRYAELWLPQP 451          
The following BLAST results are available for this feature:
BLAST of Gchil8228.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IQR8_9FLOR9.730e-12267.17BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
R7QJ09_CHOCR6.240e-2232.21BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A7S1TET1_9RHOD7.560e-2129.96Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6PIG4_PORUM1.820e-1439.20BHLH domain-containing protein n=1 Tax=Porphyra um... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 139..217
e-value: 4.8E-11
score: 44.5
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 145..212
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 148..199
e-value: 4.6E-6
score: 26.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 147..199
score: 10.90569
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 218..386
e-value: 3.4E-5
score: 25.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..147
NoneNo IPR availableSUPERFAMILY55781GAF domain-likecoord: 234..380

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:747787..749473 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8228.t1Gchil8228.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 747787..749473 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8228.t1 ID=Gchil8228.t1|Name=Gchil8228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=390bp
MCVLSRERYCLRVSVLEAREQDARLCFVCVSDHTNSSFALKKLLEAERDN
DQREFMICVCWILSSAPSSPQTPPPAFDEDDDDASLPEQNDFDPTDDESH
HSYFPNAESSSRPSQSRPQRSSDAPTEVTAQPENQSVTSGHASPTQQRRN
HHNTHTRRCRARLNNRFDTLNNMLPRSPTVEVKHKVHILDHAVSALQHMH
QENANLELFLAMRSKHKLVAWVDSYVISATTVQAALSPLIDLISQTGSWP
YAEVWRTDPPNMSLVHTKLRGSSMQYPALSTLARFSAAQHQFPIASDFTG
RSFETRAPFWTSSPTQLCQVVNRAQLMAAARLRCAFSVPVPVAGEIPFVL
SFYDVRQRDRDAAQLHSAAFAAVCVGNAWAAKQADAVAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
IPR029016GAF-like_dom_sf