Gchil8228.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8228.t1
Unique NameGchil8228.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length390
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:747787..749473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog696747.NIES39_J01280
PFAMsEAL,GAF,GAF_2,GGDEF,Response_reg
Max annot lvl1117|Cyanobacteria
Evalue7.2e-06
EggNOG OGsCOG2199@1|root,COG2203@1|root,COG3437@1|root,COG2203@2|Bacteria,COG3437@2|Bacteria,COG3706@2|Bacteria,1G2A0@1117|Cyanobacteria,1H8JI@1150|Oscillatoriales
DescriptionCOG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8228Gchil8228Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 747787..749473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8228.t1Gchil8228.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 747787..749473 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8228.t1.start1Gchil8228.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 747787..747789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8228.t1.CDS1Gchil8228.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 747787..747791 +
Gchil8228.t1.CDS2Gchil8228.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 747870..747887 +
Gchil8228.t1.CDS3Gchil8228.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 748099..748178 +
Gchil8228.t1.CDS4Gchil8228.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 748337..748427 +
Gchil8228.t1.CDS5Gchil8228.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 748498..749473 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8228.t1.exon1Gchil8228.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 747787..747791 +
Gchil8228.t1.exon2Gchil8228.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 747870..747887 +
Gchil8228.t1.exon3Gchil8228.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 748099..748178 +
Gchil8228.t1.exon4Gchil8228.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 748337..748427 +
Gchil8228.t1.exon5Gchil8228.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 748498..749473 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8228.t1.intron1Gchil8228.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 747792..747869 +
Gchil8228.t1.intron2Gchil8228.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 747888..748098 +
Gchil8228.t1.intron3Gchil8228.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 748179..748336 +
Gchil8228.t1.intron4Gchil8228.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 748428..748497 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8228.t1.stop1Gchil8228.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 749471..749473 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8228.t1 ID=Gchil8228.t1|Name=Gchil8228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=390bp
MCVLSRERYCLRVSVLEAREQDARLCFVCVSDHTNSSFALKKLLEAERDN
DQREFMICVCWILSSAPSSPQTPPPAFDEDDDDASLPEQNDFDPTDDESH
HSYFPNAESSSRPSQSRPQRSSDAPTEVTAQPENQSVTSGHASPTQQRRN
HHNTHTRRCRARLNNRFDTLNNMLPRSPTVEVKHKVHILDHAVSALQHMH
QENANLELFLAMRSKHKLVAWVDSYVISATTVQAALSPLIDLISQTGSWP
YAEVWRTDPPNMSLVHTKLRGSSMQYPALSTLARFSAAQHQFPIASDFTG
RSFETRAPFWTSSPTQLCQVVNRAQLMAAARLRCAFSVPVPVAGEIPFVL
SFYDVRQRDRDAAQLHSAAFAAVCVGNAWAAKQADAVAS*
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spliced messenger RNA

>Gchil8228.t1 ID=Gchil8228.t1|Name=Gchil8228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00004384_pilon:747787..749473+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGTTCTGTCACGAGAAAGGTATTGCTTGCGCGTCTCGGTGCTCGA
GGCACGCGAACAAGATGCTCGTTTATGCTTCGTTTGCGTGAGCGACCACA
CAAATTCTTCTTTTGCGCTCAAGAAGCTCTTGGAAGCCGAGAGAGACAAC
GACCAGAGGGAGTTCATGATCTGTGTTTGCTGGATATTGTCTTCAGCACC
CTCCTCACCTCAAACTCCACCGCCAGCATTCGATGAAGATGACGACGACG
CCTCACTTCCAGAGCAGAATGACTTCGATCCCACAGATGATGAATCTCAT
CACTCCTACTTCCCAAACGCCGAATCGTCCTCACGACCTTCGCAATCGCG
ACCTCAACGTTCTTCAGATGCTCCAACTGAAGTGACCGCACAGCCGGAGA
ATCAATCGGTTACTTCCGGCCATGCCTCTCCCACTCAACAGCGTCGAAAT
CATCACAACACGCATACGAGACGTTGCCGTGCACGTCTGAATAATCGCTT
TGATACCCTGAATAACATGCTACCTCGCTCACCCACCGTGGAAGTAAAAC
ACAAGGTACATATTCTAGACCATGCCGTATCAGCCTTGCAACACATGCAC
CAGGAAAATGCAAACCTTGAACTTTTCCTCGCCATGCGTTCAAAACACAA
ACTCGTTGCCTGGGTCGATTCTTATGTCATCTCGGCAACTACTGTTCAAG
CCGCACTTAGCCCTCTCATCGATCTCATCAGCCAAACCGGATCTTGGCCT
TACGCTGAAGTTTGGCGGACAGATCCACCGAACATGTCTTTGGTACATAC
CAAATTGCGAGGAAGTTCCATGCAATACCCAGCTCTGAGCACTCTTGCGC
GTTTTTCCGCAGCGCAACATCAGTTTCCAATTGCATCTGATTTCACAGGA
CGTTCGTTTGAAACTCGTGCTCCGTTTTGGACTTCCTCTCCTACCCAACT
GTGCCAAGTTGTTAATCGGGCACAGCTTATGGCTGCTGCCCGACTGCGTT
GTGCGTTTTCTGTTCCAGTACCGGTAGCTGGTGAAATCCCTTTCGTGCTG
TCGTTTTATGATGTTAGACAACGTGATCGGGATGCCGCTCAACTTCATTC
TGCAGCGTTTGCAGCTGTTTGTGTCGGAAACGCTTGGGCTGCCAAACAAG
CTGATGCGGTGGCATCGTAA
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protein sequence of Gchil8228.t1

>Gchil8228.t1 ID=Gchil8228.t1|Name=Gchil8228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=390bp
MCVLSRERYCLRVSVLEAREQDARLCFVCVSDHTNSSFALKKLLEAERDN
DQREFMICVCWILSSAPSSPQTPPPAFDEDDDDASLPEQNDFDPTDDESH
HSYFPNAESSSRPSQSRPQRSSDAPTEVTAQPENQSVTSGHASPTQQRRN
HHNTHTRRCRARLNNRFDTLNNMLPRSPTVEVKHKVHILDHAVSALQHMH
QENANLELFLAMRSKHKLVAWVDSYVISATTVQAALSPLIDLISQTGSWP
YAEVWRTDPPNMSLVHTKLRGSSMQYPALSTLARFSAAQHQFPIASDFTG
RSFETRAPFWTSSPTQLCQVVNRAQLMAAARLRCAFSVPVPVAGEIPFVL
SFYDVRQRDRDAAQLHSAAFAAVCVGNAWAAKQADAVAS*
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mRNA from alignment at tig00004384_pilon:747787..749473+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8228.t1 ID=Gchil8228.t1|Name=Gchil8228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1687bp|location=Sequence derived from alignment at tig00004384_pilon:747787..749473+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGTGCAGGTGAAACACGACTTGGACCATTGCGGTTGTTCGGCCTTC
GAAGTCTTTACGTTTAATGCTCTAGCGCACTAGCGTTCTGTCACGAGAAA
GGTAAGCCATGAAAACGTCCTTCTTCCTGACGCAGTGGAATGATGACTGT
TCGACGGTATCCGATAGCCATTCACCTTACTTGGCACACGTTGTAGAAAA
CAACGAACGCAACTGTGAGGGTCTGACCAACGCATCTGCGATTCGAATGA
CTTGTGGCCCGATTGGCGTTTGGGTACTGACTGAATCGCTGGCCATGTGC
TTTGTATGCTAGGTATTGCTTGCGCGTCTCGGTGCTCGAGGCACGCGAAC
AAGATGCTCGTTTATGCTTCGTTTGCGTGAGCGACCACACAAGTCCCGTT
GTGTCGCCTCTGCTGATGGCATGCTTTTTTTAATCTTTGGGGTGTATTTT
ATTTCGTTGTGCTGTGTGAGAAAGCGCGACATTCCGCGCGCCGCTGCCTT
ACCCCTTCGCGCCTACGATTTCTTTTCGTGTGTGCATTGACGGGATTTAG
ATTCTTCTTTTGCGCTCAAGAAGCTCTTGGAAGCCGAGAGAGACAACGAC
CAGAGGGAGTTCATGATCTGTGTTTGCTGGATATTGTCTTCGTATGTCGC
TTTCGTTATCAACCCCGTCTGTTCATTCGCACTCGCAACTGACGACCATG
TCGAACACTAGAGCACCCTCCTCACCTCAAACTCCACCGCCAGCATTCGA
TGAAGATGACGACGACGCCTCACTTCCAGAGCAGAATGACTTCGATCCCA
CAGATGATGAATCTCATCACTCCTACTTCCCAAACGCCGAATCGTCCTCA
CGACCTTCGCAATCGCGACCTCAACGTTCTTCAGATGCTCCAACTGAAGT
GACCGCACAGCCGGAGAATCAATCGGTTACTTCCGGCCATGCCTCTCCCA
CTCAACAGCGTCGAAATCATCACAACACGCATACGAGACGTTGCCGTGCA
CGTCTGAATAATCGCTTTGATACCCTGAATAACATGCTACCTCGCTCACC
CACCGTGGAAGTAAAACACAAGGTACATATTCTAGACCATGCCGTATCAG
CCTTGCAACACATGCACCAGGAAAATGCAAACCTTGAACTTTTCCTCGCC
ATGCGTTCAAAACACAAACTCGTTGCCTGGGTCGATTCTTATGTCATCTC
GGCAACTACTGTTCAAGCCGCACTTAGCCCTCTCATCGATCTCATCAGCC
AAACCGGATCTTGGCCTTACGCTGAAGTTTGGCGGACAGATCCACCGAAC
ATGTCTTTGGTACATACCAAATTGCGAGGAAGTTCCATGCAATACCCAGC
TCTGAGCACTCTTGCGCGTTTTTCCGCAGCGCAACATCAGTTTCCAATTG
CATCTGATTTCACAGGACGTTCGTTTGAAACTCGTGCTCCGTTTTGGACT
TCCTCTCCTACCCAACTGTGCCAAGTTGTTAATCGGGCACAGCTTATGGC
TGCTGCCCGACTGCGTTGTGCGTTTTCTGTTCCAGTACCGGTAGCTGGTG
AAATCCCTTTCGTGCTGTCGTTTTATGATGTTAGACAACGTGATCGGGAT
GCCGCTCAACTTCATTCTGCAGCGTTTGCAGCTGTTTGTGTCGGAAACGC
TTGGGCTGCCAAACAAGCTGATGCGGTGGCATCGTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:747787..749473+

>Gchil8228.t1 ID=Gchil8228.t1|Name=Gchil8228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1170bp|location=Sequence derived from alignment at tig00004384_pilon:747787..749473+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGTTCTGTCACGAGAAAGGTATTGCTTGCGCGTCTCGGTGCTCGA
GGCACGCGAACAAGATGCTCGTTTATGCTTCGTTTGCGTGAGCGACCACA
CAAATTCTTCTTTTGCGCTCAAGAAGCTCTTGGAAGCCGAGAGAGACAAC
GACCAGAGGGAGTTCATGATCTGTGTTTGCTGGATATTGTCTTCAGCACC
CTCCTCACCTCAAACTCCACCGCCAGCATTCGATGAAGATGACGACGACG
CCTCACTTCCAGAGCAGAATGACTTCGATCCCACAGATGATGAATCTCAT
CACTCCTACTTCCCAAACGCCGAATCGTCCTCACGACCTTCGCAATCGCG
ACCTCAACGTTCTTCAGATGCTCCAACTGAAGTGACCGCACAGCCGGAGA
ATCAATCGGTTACTTCCGGCCATGCCTCTCCCACTCAACAGCGTCGAAAT
CATCACAACACGCATACGAGACGTTGCCGTGCACGTCTGAATAATCGCTT
TGATACCCTGAATAACATGCTACCTCGCTCACCCACCGTGGAAGTAAAAC
ACAAGGTACATATTCTAGACCATGCCGTATCAGCCTTGCAACACATGCAC
CAGGAAAATGCAAACCTTGAACTTTTCCTCGCCATGCGTTCAAAACACAA
ACTCGTTGCCTGGGTCGATTCTTATGTCATCTCGGCAACTACTGTTCAAG
CCGCACTTAGCCCTCTCATCGATCTCATCAGCCAAACCGGATCTTGGCCT
TACGCTGAAGTTTGGCGGACAGATCCACCGAACATGTCTTTGGTACATAC
CAAATTGCGAGGAAGTTCCATGCAATACCCAGCTCTGAGCACTCTTGCGC
GTTTTTCCGCAGCGCAACATCAGTTTCCAATTGCATCTGATTTCACAGGA
CGTTCGTTTGAAACTCGTGCTCCGTTTTGGACTTCCTCTCCTACCCAACT
GTGCCAAGTTGTTAATCGGGCACAGCTTATGGCTGCTGCCCGACTGCGTT
GTGCGTTTTCTGTTCCAGTACCGGTAGCTGGTGAAATCCCTTTCGTGCTG
TCGTTTTATGATGTTAGACAACGTGATCGGGATGCCGCTCAACTTCATTC
TGCAGCGTTTGCAGCTGTTTGTGTCGGAAACGCTTGGGCTGCCAAACAAG
CTGATGCGGTGGCATCGTAA
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