Gchil8154.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8154.t1
Unique NameGchil8154.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:328798..329420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9818.XP_007957138.1
Preferred nameCETN2
PFAMsEF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,EF-hand_8
Max annot lvl33208|Metazoa
KEGG koko:K10840,ko:K16465
KEGG Pathwayko03420,map03420
GOsGO:0000003,GO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031683,GO:0031974,GO:0031981,GO:0032391,GO:0032465,GO:0032501,GO:0032504,GO:0032795,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0035869,GO:0036064,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0046483,GO:0046872,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097458,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0098534,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
Evalue1.08e-44
EggNOG OGsCOG5126@1|root,KOG0028@2759|Eukaryota,38C1B@33154|Opisthokonta,3BB2J@33208|Metazoa,3D0FW@33213|Bilateria,482AE@7711|Chordata,48XNM@7742|Vertebrata,3JA19@40674|Mammalia,34YPA@311790|Afrotheria
DescriptionEF-hand domain
COG categoryT
BRITEko00000,ko00001,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8154Gchil8154Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 328798..329420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8154.t1Gchil8154.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 328798..329420 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8154.t1.stop1Gchil8154.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 328798..328800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8154.t1.CDS1Gchil8154.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 328798..329313 -
Gchil8154.t1.CDS2Gchil8154.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 329415..329420 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8154.t1.exon1Gchil8154.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 328798..329313 -
Gchil8154.t1.exon2Gchil8154.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 329415..329420 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8154.t1.intron1Gchil8154.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 329314..329414 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8154.t1.start1Gchil8154.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 329418..329420 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8154.t1 ID=Gchil8154.t1|Name=Gchil8154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=174bp
MPDVEIDIDNNASRPIARRQELTDERKQEIREVFELFDSETSGVVEKRQL
RVMMRSLGYEPRKDQLARLIVACGISQRATQIKYEEFHTLMEKMINERDI
QEEMMHAFSLFDTDESGKITFENLREVADQLGERMTDEELREMIREADMD
KDGMVSATEFVRIMKKTSLWSAQ*
back to top

spliced messenger RNA

>Gchil8154.t1 ID=Gchil8154.t1|Name=Gchil8154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00004384_pilon:328798..329420- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGACGTTGAAATAGACATCGATAACAATGCTTCGCGACCCATTGC
ACGAAGGCAGGAGCTCACCGATGAAAGGAAGCAAGAAATTCGCGAAGTGT
TTGAGTTGTTTGATTCTGAGACTTCTGGAGTGGTCGAGAAGAGACAGCTG
CGAGTCATGATGCGTTCTCTTGGATACGAGCCGCGAAAAGATCAGCTTGC
TCGTCTCATCGTTGCGTGTGGAATATCACAACGTGCCACACAAATCAAGT
ACGAAGAGTTTCACACTCTCATGGAGAAGATGATCAATGAAAGAGACATA
CAGGAAGAAATGATGCACGCGTTCTCCCTGTTCGACACCGATGAGAGCGG
GAAAATTACTTTTGAAAATCTTCGTGAAGTTGCTGATCAGCTTGGAGAAC
GAATGACTGATGAAGAACTACGTGAGATGATCAGGGAGGCTGATATGGAC
AAAGACGGAATGGTGAGCGCAACGGAGTTTGTGCGCATCATGAAAAAGAC
CTCACTTTGGTCCGCGCAGTAG
back to top

protein sequence of Gchil8154.t1

>Gchil8154.t1 ID=Gchil8154.t1|Name=Gchil8154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=174bp
MPDVEIDIDNNASRPIARRQELTDERKQEIREVFELFDSETSGVVEKRQL
RVMMRSLGYEPRKDQLARLIVACGISQRATQIKYEEFHTLMEKMINERDI
QEEMMHAFSLFDTDESGKITFENLREVADQLGERMTDEELREMIREADMD
KDGMVSATEFVRIMKKTSLWSAQ*
back to top

mRNA from alignment at tig00004384_pilon:328798..329420-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8154.t1 ID=Gchil8154.t1|Name=Gchil8154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=623bp|location=Sequence derived from alignment at tig00004384_pilon:328798..329420- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGTAAGTTTCCACAAAATCCACTCCCCAAGTCCTGGGCAACATTA
GGACTTTTGTAGCGTTATCTTTCATCTGCAACTGACATATTTACAATCGC
TTTATAGGACGTTGAAATAGACATCGATAACAATGCTTCGCGACCCATTG
CACGAAGGCAGGAGCTCACCGATGAAAGGAAGCAAGAAATTCGCGAAGTG
TTTGAGTTGTTTGATTCTGAGACTTCTGGAGTGGTCGAGAAGAGACAGCT
GCGAGTCATGATGCGTTCTCTTGGATACGAGCCGCGAAAAGATCAGCTTG
CTCGTCTCATCGTTGCGTGTGGAATATCACAACGTGCCACACAAATCAAG
TACGAAGAGTTTCACACTCTCATGGAGAAGATGATCAATGAAAGAGACAT
ACAGGAAGAAATGATGCACGCGTTCTCCCTGTTCGACACCGATGAGAGCG
GGAAAATTACTTTTGAAAATCTTCGTGAAGTTGCTGATCAGCTTGGAGAA
CGAATGACTGATGAAGAACTACGTGAGATGATCAGGGAGGCTGATATGGA
CAAAGACGGAATGGTGAGCGCAACGGAGTTTGTGCGCATCATGAAAAAGA
CCTCACTTTGGTCCGCGCAGTAG
back to top

Coding sequence (CDS) from alignment at tig00004384_pilon:328798..329420-

>Gchil8154.t1 ID=Gchil8154.t1|Name=Gchil8154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00004384_pilon:328798..329420- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGACGTTGAAATAGACATCGATAACAATGCTTCGCGACCCATTGC
ACGAAGGCAGGAGCTCACCGATGAAAGGAAGCAAGAAATTCGCGAAGTGT
TTGAGTTGTTTGATTCTGAGACTTCTGGAGTGGTCGAGAAGAGACAGCTG
CGAGTCATGATGCGTTCTCTTGGATACGAGCCGCGAAAAGATCAGCTTGC
TCGTCTCATCGTTGCGTGTGGAATATCACAACGTGCCACACAAATCAAGT
ACGAAGAGTTTCACACTCTCATGGAGAAGATGATCAATGAAAGAGACATA
CAGGAAGAAATGATGCACGCGTTCTCCCTGTTCGACACCGATGAGAGCGG
GAAAATTACTTTTGAAAATCTTCGTGAAGTTGCTGATCAGCTTGGAGAAC
GAATGACTGATGAAGAACTACGTGAGATGATCAGGGAGGCTGATATGGAC
AAAGACGGAATGGTGAGCGCAACGGAGTTTGTGCGCATCATGAAAAAGAC
CTCACTTTGGTCCGCGCAGTAG
back to top