Gchil8142.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8142.t1
Unique Name	Gchil8142.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	789

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:184082..186448 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1460640.JCM19046_4766
PFAMs	Cellulose_synt,Glyco_tranf_2_3,Glycos_transf_2,PilZ
Max annot lvl	91061\|Bacilli
KEGG rclass	RC00005
KEGG ko	ko:K00694
KEGG TC	4.D.3.1.2,4.D.3.1.5,4.D.3.1.6
KEGG Reaction	R02889
KEGG Pathway	ko00500,ko01100,ko02026,map00500,map01100,map02026
Evalue	8.26e-46
EggNOG OGs	COG1215@1\|root,COG1215@2\|Bacteria,1TSD3@1239\|Firmicutes,4HD23@91061\|Bacilli,1ZFCB@1386\|Bacillus
EC	2.4.1.12
Description	Cellulose synthase
COG category	M
CAZy	GT2
BRITE	ko00000,ko00001,ko01000,ko01003,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8142	Gchil8142	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 184082..186448 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8142.t1.start1	Gchil8142.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 184082..184084 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8142.t1.CDS1	Gchil8142.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 184082..186448 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8142.t1.exon1	Gchil8142.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 184082..186448 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8142.t1.stop1	Gchil8142.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 186446..186448 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8142.t1	Gchil8142.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 184082..186448 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:184082..186448+
coding sequence from alignment at tig00004384_pilon:184082..186448+

mRNA sequence

>Gchil8142.t1 ID=Gchil8142.t1|Name=Gchil8142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp
MSTAQPDNDKRRRQWLAGGGFRASKPLRPSQCVEWSPGKPCHWTEQTRFV
KWRCIFSRVFGLLQLAAGTAYIQFRFRFTIAVFERSQTIAYRIYQYVFFV
FEVITLFAIFFRLLEIWNVSTRNCVDFKRIPNHMIEPQFTHSSKSGVPSH
VSNYPSVGIFIPCYNEEVDLVLETILGALHIDYPSELLTVYLCDDGKDPL
KRNMISQLRKQYKNVHYVIRPHHSHAKAGNLNYSLERTTTHLVVTLDADF
VARPNLLQRLIPYYFVWNPQTGLYEFNETLAVVQSPQHFRNLSPYESDPL
DQRSTFFAELVLPGKDWFNCSTMIGTTNLISRIALQKANYYPYHSITEDT
AMSLMFHSLGYRTYYVNESLATGLATTSLWSNLRQRARWLKGDWQILFSS
RGPLTIRGLSIVQRFLYMHMTFVRFISVVHLLYDIAAVLLLVGGIAPLDS
PDPIQFIIYISAFFFSSLIQRSIVTMGGTGLRKSESGSVAFEAIFRYTTV
KGLFIALFRGKNLTFKVTDKHGTKKKKRKKPRTESEEEGGEKVEGNKTEE
KFEQHARMTMLGRSGPNEPGHGMVVDGVIEDEENMDSVVVEIDSSSPSGG
SSDQHTYSTGNEYDSSTTMSVDDDGRSYKKVMRAKTAEERAERRKDIRKN
LKRIWFNVVMAIVLVFSIVWGIVNPPKQIVADVNGESTFRNPDIFPMAMA
LGFAMANLLPHLLAIYLCFIPYVSGWVMSDLVHGRCDQFAIHPRSGKLFV
PWSFIILLEGAKGLLIFGSMAFLLVYTLVDNRNAGGTQ*

spliced messenger RNA

>Gchil8142.t1 ID=Gchil8142.t1|Name=Gchil8142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2367bp|location=Sequence derived from alignment at tig00004384_pilon:184082..186448+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCGCGCAACCAGACAATGACAAACGACGTCGACAATGGCTCGC
TGGTGGCGGTTTTCGGGCGTCCAAGCCGCTTCGTCCATCGCAATGCGTCG
AGTGGAGTCCGGGGAAGCCTTGCCACTGGACGGAGCAGACCCGCTTCGTG
AAATGGAGATGTATCTTCTCTCGAGTATTTGGTTTGCTTCAGCTGGCTGC
TGGTACTGCTTACATTCAGTTTCGTTTTCGCTTCACAATTGCTGTCTTTG
AAAGAAGTCAAACAATTGCCTATCGCATTTATCAATATGTCTTCTTTGTG
TTTGAAGTTATTACTTTGTTTGCCATTTTCTTTCGTTTATTAGAGATCTG
GAATGTTTCGACAAGAAATTGCGTCGACTTCAAGAGGATTCCGAACCACA
TGATTGAGCCTCAGTTCACTCACTCTTCGAAATCAGGAGTTCCGTCTCAT
GTGTCAAACTACCCTTCGGTGGGAATTTTTATTCCGTGTTACAACGAAGA
AGTTGATCTTGTATTGGAGACAATTTTGGGAGCACTTCACATTGACTATC
CGTCCGAACTACTAACCGTGTATCTCTGTGATGATGGAAAAGATCCATTG
AAACGAAACATGATCTCTCAACTACGAAAACAATACAAAAATGTACATTA
TGTTATTCGTCCACATCATTCTCACGCCAAAGCTGGAAATCTTAATTACT
CTCTCGAACGAACTACAACACATTTAGTGGTAACTCTTGACGCTGACTTT
GTTGCAAGGCCCAATCTCTTACAACGACTTATTCCGTATTACTTTGTATG
GAACCCTCAGACTGGTTTATACGAGTTCAACGAAACTCTTGCAGTGGTGC
AATCACCTCAACATTTTCGCAACTTGTCTCCTTACGAAAGCGACCCGCTG
GATCAGCGCTCTACCTTTTTCGCCGAACTTGTGCTTCCCGGCAAGGATTG
GTTCAATTGCTCTACCATGATAGGAACTACAAATCTAATCAGCAGGATTG
CCTTACAGAAGGCAAATTATTATCCGTATCATTCCATCACGGAGGATACT
GCAATGTCACTCATGTTTCACAGTTTGGGGTATCGTACATATTATGTGAA
CGAATCATTGGCAACTGGCCTTGCGACAACGTCATTGTGGAGCAACCTAC
GCCAGAGAGCAAGATGGCTTAAAGGGGATTGGCAAATCTTGTTTTCTTCG
CGAGGGCCGTTAACAATTCGTGGGCTTTCGATTGTACAGCGATTTTTGTA
CATGCATATGACGTTTGTACGATTCATATCGGTGGTTCACCTGCTATATG
ACATCGCGGCTGTCTTGTTGTTGGTTGGTGGCATTGCTCCTCTTGACTCA
CCAGATCCGATTCAATTCATCATTTATATCAGCGCATTCTTCTTTTCAAG
TCTGATTCAGCGATCCATTGTAACGATGGGTGGGACTGGGTTGCGAAAAT
CGGAGTCGGGGTCTGTGGCGTTTGAAGCAATTTTCAGGTATACTACCGTT
AAAGGGTTATTTATTGCGCTATTCAGAGGAAAGAACCTGACGTTCAAAGT
TACCGACAAGCATGGTACCAAGAAGAAGAAAAGAAAGAAGCCACGAACCG
AGAGTGAGGAAGAAGGTGGCGAGAAAGTGGAAGGCAATAAGACTGAAGAA
AAGTTTGAACAGCATGCCAGGATGACGATGTTGGGTCGGTCTGGTCCGAA
CGAACCTGGGCACGGAATGGTGGTTGATGGAGTGATTGAAGATGAGGAAA
ATATGGACTCGGTTGTTGTAGAGATTGATTCTAGCTCTCCTTCGGGCGGC
AGCAGCGACCAGCATACATACAGTACAGGAAATGAGTATGACAGCTCAAC
CACGATGTCTGTGGATGACGATGGACGAAGCTACAAGAAGGTGATGAGAG
CAAAAACAGCTGAAGAACGAGCGGAACGGCGAAAGGATATCAGAAAGAAC
CTGAAACGAATCTGGTTCAATGTTGTGATGGCTATTGTGTTGGTATTTTC
GATCGTATGGGGCATTGTGAATCCACCAAAACAAATTGTTGCGGACGTGA
ATGGAGAGAGCACGTTTCGCAATCCGGATATCTTCCCCATGGCCATGGCA
CTTGGGTTCGCAATGGCGAACTTGTTGCCGCATTTGCTGGCGATTTATCT
TTGTTTCATTCCGTATGTTTCCGGGTGGGTGATGTCGGACCTGGTTCACG
GGCGATGTGACCAGTTCGCGATCCATCCGCGAAGTGGGAAACTGTTCGTG
CCTTGGTCGTTCATCATATTATTGGAGGGAGCGAAGGGGTTATTGATCTT
CGGATCAATGGCATTCTTGCTGGTATATACGTTGGTGGACAATCGAAATG
CGGGCGGAACGCAATAG

protein sequence of Gchil8142.t1

>Gchil8142.t1 ID=Gchil8142.t1|Name=Gchil8142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=789bp
MSTAQPDNDKRRRQWLAGGGFRASKPLRPSQCVEWSPGKPCHWTEQTRFV
KWRCIFSRVFGLLQLAAGTAYIQFRFRFTIAVFERSQTIAYRIYQYVFFV
FEVITLFAIFFRLLEIWNVSTRNCVDFKRIPNHMIEPQFTHSSKSGVPSH
VSNYPSVGIFIPCYNEEVDLVLETILGALHIDYPSELLTVYLCDDGKDPL
KRNMISQLRKQYKNVHYVIRPHHSHAKAGNLNYSLERTTTHLVVTLDADF
VARPNLLQRLIPYYFVWNPQTGLYEFNETLAVVQSPQHFRNLSPYESDPL
DQRSTFFAELVLPGKDWFNCSTMIGTTNLISRIALQKANYYPYHSITEDT
AMSLMFHSLGYRTYYVNESLATGLATTSLWSNLRQRARWLKGDWQILFSS
RGPLTIRGLSIVQRFLYMHMTFVRFISVVHLLYDIAAVLLLVGGIAPLDS
PDPIQFIIYISAFFFSSLIQRSIVTMGGTGLRKSESGSVAFEAIFRYTTV
KGLFIALFRGKNLTFKVTDKHGTKKKKRKKPRTESEEEGGEKVEGNKTEE
KFEQHARMTMLGRSGPNEPGHGMVVDGVIEDEENMDSVVVEIDSSSPSGG
SSDQHTYSTGNEYDSSTTMSVDDDGRSYKKVMRAKTAEERAERRKDIRKN
LKRIWFNVVMAIVLVFSIVWGIVNPPKQIVADVNGESTFRNPDIFPMAMA
LGFAMANLLPHLLAIYLCFIPYVSGWVMSDLVHGRCDQFAIHPRSGKLFV
PWSFIILLEGAKGLLIFGSMAFLLVYTLVDNRNAGGTQ*

mRNA from alignment at tig00004384_pilon:184082..186448+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8142.t1 ID=Gchil8142.t1|Name=Gchil8142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2367bp|location=Sequence derived from alignment at tig00004384_pilon:184082..186448+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACCGCGCAACCAGACAATGACAAACGACGTCGACAATGGCTCGC
TGGTGGCGGTTTTCGGGCGTCCAAGCCGCTTCGTCCATCGCAATGCGTCG
AGTGGAGTCCGGGGAAGCCTTGCCACTGGACGGAGCAGACCCGCTTCGTG
AAATGGAGATGTATCTTCTCTCGAGTATTTGGTTTGCTTCAGCTGGCTGC
TGGTACTGCTTACATTCAGTTTCGTTTTCGCTTCACAATTGCTGTCTTTG
AAAGAAGTCAAACAATTGCCTATCGCATTTATCAATATGTCTTCTTTGTG
TTTGAAGTTATTACTTTGTTTGCCATTTTCTTTCGTTTATTAGAGATCTG
GAATGTTTCGACAAGAAATTGCGTCGACTTCAAGAGGATTCCGAACCACA
TGATTGAGCCTCAGTTCACTCACTCTTCGAAATCAGGAGTTCCGTCTCAT
GTGTCAAACTACCCTTCGGTGGGAATTTTTATTCCGTGTTACAACGAAGA
AGTTGATCTTGTATTGGAGACAATTTTGGGAGCACTTCACATTGACTATC
CGTCCGAACTACTAACCGTGTATCTCTGTGATGATGGAAAAGATCCATTG
AAACGAAACATGATCTCTCAACTACGAAAACAATACAAAAATGTACATTA
TGTTATTCGTCCACATCATTCTCACGCCAAAGCTGGAAATCTTAATTACT
CTCTCGAACGAACTACAACACATTTAGTGGTAACTCTTGACGCTGACTTT
GTTGCAAGGCCCAATCTCTTACAACGACTTATTCCGTATTACTTTGTATG
GAACCCTCAGACTGGTTTATACGAGTTCAACGAAACTCTTGCAGTGGTGC
AATCACCTCAACATTTTCGCAACTTGTCTCCTTACGAAAGCGACCCGCTG
GATCAGCGCTCTACCTTTTTCGCCGAACTTGTGCTTCCCGGCAAGGATTG
GTTCAATTGCTCTACCATGATAGGAACTACAAATCTAATCAGCAGGATTG
CCTTACAGAAGGCAAATTATTATCCGTATCATTCCATCACGGAGGATACT
GCAATGTCACTCATGTTTCACAGTTTGGGGTATCGTACATATTATGTGAA
CGAATCATTGGCAACTGGCCTTGCGACAACGTCATTGTGGAGCAACCTAC
GCCAGAGAGCAAGATGGCTTAAAGGGGATTGGCAAATCTTGTTTTCTTCG
CGAGGGCCGTTAACAATTCGTGGGCTTTCGATTGTACAGCGATTTTTGTA
CATGCATATGACGTTTGTACGATTCATATCGGTGGTTCACCTGCTATATG
ACATCGCGGCTGTCTTGTTGTTGGTTGGTGGCATTGCTCCTCTTGACTCA
CCAGATCCGATTCAATTCATCATTTATATCAGCGCATTCTTCTTTTCAAG
TCTGATTCAGCGATCCATTGTAACGATGGGTGGGACTGGGTTGCGAAAAT
CGGAGTCGGGGTCTGTGGCGTTTGAAGCAATTTTCAGGTATACTACCGTT
AAAGGGTTATTTATTGCGCTATTCAGAGGAAAGAACCTGACGTTCAAAGT
TACCGACAAGCATGGTACCAAGAAGAAGAAAAGAAAGAAGCCACGAACCG
AGAGTGAGGAAGAAGGTGGCGAGAAAGTGGAAGGCAATAAGACTGAAGAA
AAGTTTGAACAGCATGCCAGGATGACGATGTTGGGTCGGTCTGGTCCGAA
CGAACCTGGGCACGGAATGGTGGTTGATGGAGTGATTGAAGATGAGGAAA
ATATGGACTCGGTTGTTGTAGAGATTGATTCTAGCTCTCCTTCGGGCGGC
AGCAGCGACCAGCATACATACAGTACAGGAAATGAGTATGACAGCTCAAC
CACGATGTCTGTGGATGACGATGGACGAAGCTACAAGAAGGTGATGAGAG
CAAAAACAGCTGAAGAACGAGCGGAACGGCGAAAGGATATCAGAAAGAAC
CTGAAACGAATCTGGTTCAATGTTGTGATGGCTATTGTGTTGGTATTTTC
GATCGTATGGGGCATTGTGAATCCACCAAAACAAATTGTTGCGGACGTGA
ATGGAGAGAGCACGTTTCGCAATCCGGATATCTTCCCCATGGCCATGGCA
CTTGGGTTCGCAATGGCGAACTTGTTGCCGCATTTGCTGGCGATTTATCT
TTGTTTCATTCCGTATGTTTCCGGGTGGGTGATGTCGGACCTGGTTCACG
GGCGATGTGACCAGTTCGCGATCCATCCGCGAAGTGGGAAACTGTTCGTG
CCTTGGTCGTTCATCATATTATTGGAGGGAGCGAAGGGGTTATTGATCTT
CGGATCAATGGCATTCTTGCTGGTATATACGTTGGTGGACAATCGAAATG
CGGGCGGAACGCAATAG

Coding sequence (CDS) from alignment at tig00004384_pilon:184082..186448+

>Gchil8142.t1 ID=Gchil8142.t1|Name=Gchil8142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2367bp|location=Sequence derived from alignment at tig00004384_pilon:184082..186448+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACCGCGCAACCAGACAATGACAAACGACGTCGACAATGGCTCGC
TGGTGGCGGTTTTCGGGCGTCCAAGCCGCTTCGTCCATCGCAATGCGTCG
AGTGGAGTCCGGGGAAGCCTTGCCACTGGACGGAGCAGACCCGCTTCGTG
AAATGGAGATGTATCTTCTCTCGAGTATTTGGTTTGCTTCAGCTGGCTGC
TGGTACTGCTTACATTCAGTTTCGTTTTCGCTTCACAATTGCTGTCTTTG
AAAGAAGTCAAACAATTGCCTATCGCATTTATCAATATGTCTTCTTTGTG
TTTGAAGTTATTACTTTGTTTGCCATTTTCTTTCGTTTATTAGAGATCTG
GAATGTTTCGACAAGAAATTGCGTCGACTTCAAGAGGATTCCGAACCACA
TGATTGAGCCTCAGTTCACTCACTCTTCGAAATCAGGAGTTCCGTCTCAT
GTGTCAAACTACCCTTCGGTGGGAATTTTTATTCCGTGTTACAACGAAGA
AGTTGATCTTGTATTGGAGACAATTTTGGGAGCACTTCACATTGACTATC
CGTCCGAACTACTAACCGTGTATCTCTGTGATGATGGAAAAGATCCATTG
AAACGAAACATGATCTCTCAACTACGAAAACAATACAAAAATGTACATTA
TGTTATTCGTCCACATCATTCTCACGCCAAAGCTGGAAATCTTAATTACT
CTCTCGAACGAACTACAACACATTTAGTGGTAACTCTTGACGCTGACTTT
GTTGCAAGGCCCAATCTCTTACAACGACTTATTCCGTATTACTTTGTATG
GAACCCTCAGACTGGTTTATACGAGTTCAACGAAACTCTTGCAGTGGTGC
AATCACCTCAACATTTTCGCAACTTGTCTCCTTACGAAAGCGACCCGCTG
GATCAGCGCTCTACCTTTTTCGCCGAACTTGTGCTTCCCGGCAAGGATTG
GTTCAATTGCTCTACCATGATAGGAACTACAAATCTAATCAGCAGGATTG
CCTTACAGAAGGCAAATTATTATCCGTATCATTCCATCACGGAGGATACT
GCAATGTCACTCATGTTTCACAGTTTGGGGTATCGTACATATTATGTGAA
CGAATCATTGGCAACTGGCCTTGCGACAACGTCATTGTGGAGCAACCTAC
GCCAGAGAGCAAGATGGCTTAAAGGGGATTGGCAAATCTTGTTTTCTTCG
CGAGGGCCGTTAACAATTCGTGGGCTTTCGATTGTACAGCGATTTTTGTA
CATGCATATGACGTTTGTACGATTCATATCGGTGGTTCACCTGCTATATG
ACATCGCGGCTGTCTTGTTGTTGGTTGGTGGCATTGCTCCTCTTGACTCA
CCAGATCCGATTCAATTCATCATTTATATCAGCGCATTCTTCTTTTCAAG
TCTGATTCAGCGATCCATTGTAACGATGGGTGGGACTGGGTTGCGAAAAT
CGGAGTCGGGGTCTGTGGCGTTTGAAGCAATTTTCAGGTATACTACCGTT
AAAGGGTTATTTATTGCGCTATTCAGAGGAAAGAACCTGACGTTCAAAGT
TACCGACAAGCATGGTACCAAGAAGAAGAAAAGAAAGAAGCCACGAACCG
AGAGTGAGGAAGAAGGTGGCGAGAAAGTGGAAGGCAATAAGACTGAAGAA
AAGTTTGAACAGCATGCCAGGATGACGATGTTGGGTCGGTCTGGTCCGAA
CGAACCTGGGCACGGAATGGTGGTTGATGGAGTGATTGAAGATGAGGAAA
ATATGGACTCGGTTGTTGTAGAGATTGATTCTAGCTCTCCTTCGGGCGGC
AGCAGCGACCAGCATACATACAGTACAGGAAATGAGTATGACAGCTCAAC
CACGATGTCTGTGGATGACGATGGACGAAGCTACAAGAAGGTGATGAGAG
CAAAAACAGCTGAAGAACGAGCGGAACGGCGAAAGGATATCAGAAAGAAC
CTGAAACGAATCTGGTTCAATGTTGTGATGGCTATTGTGTTGGTATTTTC
GATCGTATGGGGCATTGTGAATCCACCAAAACAAATTGTTGCGGACGTGA
ATGGAGAGAGCACGTTTCGCAATCCGGATATCTTCCCCATGGCCATGGCA
CTTGGGTTCGCAATGGCGAACTTGTTGCCGCATTTGCTGGCGATTTATCT
TTGTTTCATTCCGTATGTTTCCGGGTGGGTGATGTCGGACCTGGTTCACG
GGCGATGTGACCAGTTCGCGATCCATCCGCGAAGTGGGAAACTGTTCGTG
CCTTGGTCGTTCATCATATTATTGGAGGGAGCGAAGGGGTTATTGATCTT
CGGATCAATGGCATTCTTGCTGGTATATACGTTGGTGGACAATCGAAATG
CGGGCGGAACGCAATAG