Gchil8238.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8238.t1
Unique NameGchil8238.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length432
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:838076..839611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S138_117V6.1
Preferred nameMPK1
PFAMsPkinase
Max annot lvl35493|Streptophyta
KEGG koko:K20535
KEGG Pathwayko04016,map04016
GOsGO:0000165,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0010468,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0032870,GO:0035556,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0140096,GO:1901564
Evalue1.41e-119
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota,37RP5@33090|Viridiplantae,3G8EF@35493|Streptophyta
EC2.7.11.24
Descriptionmitogen-activated protein kinase
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8238Gchil8238Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 838076..839611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8238.t1Gchil8238.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 838076..839611 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8238.t1.start1Gchil8238.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 838076..838078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8238.t1.CDS1Gchil8238.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 838076..838647 +
Gchil8238.t1.CDS2Gchil8238.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 838774..838828 +
Gchil8238.t1.CDS3Gchil8238.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 838943..839611 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8238.t1.exon1Gchil8238.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 838076..838647 +
Gchil8238.t1.exon2Gchil8238.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 838774..838828 +
Gchil8238.t1.exon3Gchil8238.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 838943..839611 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8238.t1.intron1Gchil8238.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 838648..838773 +
Gchil8238.t1.intron2Gchil8238.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 838829..838942 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8238.t1.stop1Gchil8238.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 839609..839611 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8238.t1 ID=Gchil8238.t1|Name=Gchil8238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=432bp
MKNKNIKQWVFNKRKSINDIFGNARPNVEDDSPTTMDTDNADLGASPQNP
PPLPTKTVFYAKGNPFRVSTRYSYLRTLGHGAYGVVCAANDAVLQRKVAI
KKVAAVFEDLTDAKRIIREIRLLGYMKHDNVLRIVDIDEPELYDTFADVY
IVTELMDTDLHKLLHSSHPLVESQRKYFAYQMLRALRYIHSASVLHRDLK
PANVLVSETCDIKICDFGLARYLDPAEAAAHDMTEYVVTRWYRAPELLLA
CDEYGAAIDMWSVGCVIAELYSRKPIFPGRDVKNQIELICSVVGKPQVDD
FHFVKNHAARQFIAHLPPSNREDLRKLLPGAGPAVIDLVDRLLQFDPRNR
LSAEEALNHPYVRDYRDVASEKVADHLDYNTLEPPNEQKLGKDGIRRLMW
NEILKFHPDAMFREPQSAKDAALKVNYMTSF*
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spliced messenger RNA

>Gchil8238.t1 ID=Gchil8238.t1|Name=Gchil8238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00004384_pilon:838076..839611+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAACAAGAACATAAAGCAATGGGTTTTTAACAAGAGAAAGAGTAT
CAATGACATATTTGGCAATGCCCGCCCAAACGTAGAGGACGATTCCCCAA
CTACCATGGATACAGACAACGCAGACCTTGGTGCTTCTCCGCAGAATCCC
CCGCCACTACCCACCAAGACCGTGTTCTATGCAAAGGGAAACCCTTTCCG
CGTCTCCACCAGATACTCGTATCTCCGAACCCTCGGCCACGGTGCCTACG
GTGTAGTGTGTGCCGCCAACGATGCAGTTCTTCAGAGAAAAGTTGCAATC
AAGAAAGTTGCCGCCGTCTTTGAAGACCTCACTGACGCCAAACGCATCAT
CAGAGAGATTAGGCTTCTGGGCTACATGAAGCATGACAACGTTTTGCGCA
TCGTCGATATCGATGAGCCTGAGCTCTACGACACCTTTGCCGATGTTTAT
ATCGTTACAGAGCTTATGGATACAGACCTGCACAAACTGCTTCATTCTTC
TCATCCGCTCGTGGAATCGCAAAGAAAGTATTTTGCCTATCAGATGCTTC
GTGCTCTTCGCTACATTCATAGTGCCAGTGTTTTGCACCGAGACCTTAAA
CCTGCCAACGTGCTCGTTTCAGAAACGTGCGATATAAAAATCTGCGACTT
TGGGCTCGCCAGATACCTGGATCCTGCTGAAGCCGCTGCGCACGATATGA
CCGAATATGTGGTCACCCGATGGTACCGAGCCCCAGAGTTGCTTCTGGCA
TGCGACGAATATGGCGCAGCAATCGACATGTGGAGTGTGGGCTGCGTCAT
AGCCGAACTATACTCGAGGAAACCAATATTTCCGGGGCGCGACGTTAAGA
ATCAAATAGAATTGATATGCTCCGTTGTCGGAAAACCGCAGGTAGACGAT
TTCCATTTCGTGAAGAACCATGCCGCAAGGCAATTTATCGCACATCTGCC
TCCGAGCAATCGCGAGGACCTTCGAAAGCTGCTTCCAGGTGCTGGTCCAG
CTGTCATAGATCTTGTGGACCGGCTTCTCCAGTTTGATCCGAGGAACAGG
CTATCTGCGGAAGAGGCGTTGAATCACCCGTATGTTCGAGACTACAGGGA
TGTTGCTTCGGAGAAAGTCGCAGATCATCTTGACTACAACACCTTGGAAC
CTCCGAATGAACAGAAGCTCGGAAAAGATGGCATACGCCGTCTAATGTGG
AATGAGATTCTTAAATTTCATCCAGATGCCATGTTTCGCGAACCCCAAAG
CGCCAAAGACGCGGCACTCAAAGTGAATTATATGACGTCCTTTTAG
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protein sequence of Gchil8238.t1

>Gchil8238.t1 ID=Gchil8238.t1|Name=Gchil8238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=432bp
MKNKNIKQWVFNKRKSINDIFGNARPNVEDDSPTTMDTDNADLGASPQNP
PPLPTKTVFYAKGNPFRVSTRYSYLRTLGHGAYGVVCAANDAVLQRKVAI
KKVAAVFEDLTDAKRIIREIRLLGYMKHDNVLRIVDIDEPELYDTFADVY
IVTELMDTDLHKLLHSSHPLVESQRKYFAYQMLRALRYIHSASVLHRDLK
PANVLVSETCDIKICDFGLARYLDPAEAAAHDMTEYVVTRWYRAPELLLA
CDEYGAAIDMWSVGCVIAELYSRKPIFPGRDVKNQIELICSVVGKPQVDD
FHFVKNHAARQFIAHLPPSNREDLRKLLPGAGPAVIDLVDRLLQFDPRNR
LSAEEALNHPYVRDYRDVASEKVADHLDYNTLEPPNEQKLGKDGIRRLMW
NEILKFHPDAMFREPQSAKDAALKVNYMTSF*
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mRNA from alignment at tig00004384_pilon:838076..839611+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8238.t1 ID=Gchil8238.t1|Name=Gchil8238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00004384_pilon:838076..839611+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAACAAGAACATAAAGCAATGGGTTTTTAACAAGAGAAAGAGTAT
CAATGACATATTTGGCAATGCCCGCCCAAACGTAGAGGACGATTCCCCAA
CTACCATGGATACAGACAACGCAGACCTTGGTGCTTCTCCGCAGAATCCC
CCGCCACTACCCACCAAGACCGTGTTCTATGCAAAGGGAAACCCTTTCCG
CGTCTCCACCAGATACTCGTATCTCCGAACCCTCGGCCACGGTGCCTACG
GTGTAGTGTGTGCCGCCAACGATGCAGTTCTTCAGAGAAAAGTTGCAATC
AAGAAAGTTGCCGCCGTCTTTGAAGACCTCACTGACGCCAAACGCATCAT
CAGAGAGATTAGGCTTCTGGGCTACATGAAGCATGACAACGTTTTGCGCA
TCGTCGATATCGATGAGCCTGAGCTCTACGACACCTTTGCCGATGTTTAT
ATCGTTACAGAGCTTATGGATACAGACCTGCACAAACTGCTTCATTCTTC
TCATCCGCTCGTGGAATCGCAAAGAAAGTATTTTGCCTATCAGATGCTTC
GTGCTCTTCGCTACATTCATAGGTAACGTATTTGCACTCAATTCCCCGAG
GTACACCGAGACACAGAGCTTCGCCATCTTGTTGCAATGGAAAACGTTTG
CTAACCAATATCTTCCTTTTTGCGCTGCCTGCCTTCTTTTGTTCACAGTG
CCAGTGTTTTGCACCGAGACCTTAAACCTGCCAACGTGCTCGTTTCAGAA
ACGGTGAGTTCCTGTCTTCTTCTTCTTCTGCAAGTGTTTACCCATGATCA
ACAAACCACCAAAAAGTATCTGACATATTAATGCTTACCCTCTATGCCGT
TGTCGACCCAAATGCAGTGCGATATAAAAATCTGCGACTTTGGGCTCGCC
AGATACCTGGATCCTGCTGAAGCCGCTGCGCACGATATGACCGAATATGT
GGTCACCCGATGGTACCGAGCCCCAGAGTTGCTTCTGGCATGCGACGAAT
ATGGCGCAGCAATCGACATGTGGAGTGTGGGCTGCGTCATAGCCGAACTA
TACTCGAGGAAACCAATATTTCCGGGGCGCGACGTTAAGAATCAAATAGA
ATTGATATGCTCCGTTGTCGGAAAACCGCAGGTAGACGATTTCCATTTCG
TGAAGAACCATGCCGCAAGGCAATTTATCGCACATCTGCCTCCGAGCAAT
CGCGAGGACCTTCGAAAGCTGCTTCCAGGTGCTGGTCCAGCTGTCATAGA
TCTTGTGGACCGGCTTCTCCAGTTTGATCCGAGGAACAGGCTATCTGCGG
AAGAGGCGTTGAATCACCCGTATGTTCGAGACTACAGGGATGTTGCTTCG
GAGAAAGTCGCAGATCATCTTGACTACAACACCTTGGAACCTCCGAATGA
ACAGAAGCTCGGAAAAGATGGCATACGCCGTCTAATGTGGAATGAGATTC
TTAAATTTCATCCAGATGCCATGTTTCGCGAACCCCAAAGCGCCAAAGAC
GCGGCACTCAAAGTGAATTATATGACGTCCTTTTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:838076..839611+

>Gchil8238.t1 ID=Gchil8238.t1|Name=Gchil8238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1296bp|location=Sequence derived from alignment at tig00004384_pilon:838076..839611+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAACAAGAACATAAAGCAATGGGTTTTTAACAAGAGAAAGAGTAT
CAATGACATATTTGGCAATGCCCGCCCAAACGTAGAGGACGATTCCCCAA
CTACCATGGATACAGACAACGCAGACCTTGGTGCTTCTCCGCAGAATCCC
CCGCCACTACCCACCAAGACCGTGTTCTATGCAAAGGGAAACCCTTTCCG
CGTCTCCACCAGATACTCGTATCTCCGAACCCTCGGCCACGGTGCCTACG
GTGTAGTGTGTGCCGCCAACGATGCAGTTCTTCAGAGAAAAGTTGCAATC
AAGAAAGTTGCCGCCGTCTTTGAAGACCTCACTGACGCCAAACGCATCAT
CAGAGAGATTAGGCTTCTGGGCTACATGAAGCATGACAACGTTTTGCGCA
TCGTCGATATCGATGAGCCTGAGCTCTACGACACCTTTGCCGATGTTTAT
ATCGTTACAGAGCTTATGGATACAGACCTGCACAAACTGCTTCATTCTTC
TCATCCGCTCGTGGAATCGCAAAGAAAGTATTTTGCCTATCAGATGCTTC
GTGCTCTTCGCTACATTCATAGTGCCAGTGTTTTGCACCGAGACCTTAAA
CCTGCCAACGTGCTCGTTTCAGAAACGTGCGATATAAAAATCTGCGACTT
TGGGCTCGCCAGATACCTGGATCCTGCTGAAGCCGCTGCGCACGATATGA
CCGAATATGTGGTCACCCGATGGTACCGAGCCCCAGAGTTGCTTCTGGCA
TGCGACGAATATGGCGCAGCAATCGACATGTGGAGTGTGGGCTGCGTCAT
AGCCGAACTATACTCGAGGAAACCAATATTTCCGGGGCGCGACGTTAAGA
ATCAAATAGAATTGATATGCTCCGTTGTCGGAAAACCGCAGGTAGACGAT
TTCCATTTCGTGAAGAACCATGCCGCAAGGCAATTTATCGCACATCTGCC
TCCGAGCAATCGCGAGGACCTTCGAAAGCTGCTTCCAGGTGCTGGTCCAG
CTGTCATAGATCTTGTGGACCGGCTTCTCCAGTTTGATCCGAGGAACAGG
CTATCTGCGGAAGAGGCGTTGAATCACCCGTATGTTCGAGACTACAGGGA
TGTTGCTTCGGAGAAAGTCGCAGATCATCTTGACTACAACACCTTGGAAC
CTCCGAATGAACAGAAGCTCGGAAAAGATGGCATACGCCGTCTAATGTGG
AATGAGATTCTTAAATTTCATCCAGATGCCATGTTTCGCGAACCCCAAAG
CGCCAAAGACGCGGCACTCAAAGTGAATTATATGACGTCCTTTTAG
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