Gchil8236.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil8236.t1
Unique Name	Gchil8236.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	397

Homology

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BLAST of Gchil8236.t1 vs. uniprot
Match: A0A2V3IRS1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRS1_9FLOR)

HSP 1 Score: 197 bits (502), Expect = 1.080e-56
Identity = 144/353 (40.79%), Postives = 184/353 (52.12%), Query Frame = 0

Query:   52 LRAVVRRLSLRRAPRPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTLVRIDGSRRGPDHARPAAKLAVARSAFDDVPPPQRYDPAWNGGAPLRAEAGRLASRAARCVDASCGDGCHHGPVLPPAFTLRSSDLDDSDSDHSSSHSRSFCACHSCASSQPLALSPPSHLCFTPRSPLTPPPPVLDTC-VSLDNRPAPMPHRSCTPSXXXXXXXXXXXXXXXXXSLAPHGSHPSPPSAD----PSLP---PTVFDSVLCAKLTAADIRLLVEHDYHGEVIVERPTDIRARVHTTLDNASTACTVVFSLHQRNHSCRISMRRSFADSFRITNHLFDAFCSEFAARFHQLRHVPQ 396
            LR+VVRR+S + AP P A                               LV ID  RR PD AR  A  +++ SAFDD+PPP+ YDP+WN   PLR EAGRLA  +              GPVLP AFTL SSDLDD+DS+           C++ ++  PL+     H C         P PV DT  + L +  AP    S   S                 S        +P +      PS P   P+VFDS L   LTAADIRL+VEHD+ GE+  +RP ++RAR+   L N+ T CT VF+L QR+H+CR+S+RRSFADSFRI+N  FD FCS+F+ RF+QLRH+ Q
Sbjct:   17 LRSVVRRIS-KAAPSPQAAAAAPPPC----------------------ALVEIDPHRREPDDARKPAD-SLSTSAFDDLPPPELYDPSWNT-LPLRCEAGRLAPGST-------------GPVLPVAFTLNSSDLDDTDSEDD---------CNTSSTHPPLSSCASHHHC---------PAPVADTPPLVLQSSNAPSTAASTRTSRASFKTADNPSPRQARKSTVWRRMAAAPLAVSSIITPSTPNNRPSVFDSPLPIALTAADIRLIVEHDFQGELTAQRPAELRARISLNLHNSPTMCTFVFALEQRHHTCRVSVRRSFADSFRISNDHFDYFCSQFSTRFYQLRHLSQ 313

The following BLAST results are available for this feature:

BLAST of Gchil8236.t1 vs. uniprot

BLAST of Gchil8236.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IRS1_9FLOR	1.080e-56	40.79	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..143
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..29
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..29
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 30..396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:834718..835908 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8236.t1	Gchil8236.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004384_pilon 834718..835908 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil8236.t1 ID=Gchil8236.t1|Name=Gchil8236.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=397bp
MAAAAAAAAAAPDASSAAAVAAAVVAASASAPPLPPLPPPPPPPPAPAAV
GLRAVVRRLSLRRAPRPAAPAPSPSPAPRTDDQGRDDGDDDDDDDDDGVT
LVRIDGSRRGPDHARPAAKLAVARSAFDDVPPPQRYDPAWNGGAPLRAEA
GRLASRAARCVDASCGDGCHHGPVLPPAFTLRSSDLDDSDSDHSSSHSRS
FCACHSCASSQPLALSPPSHLCFTPRSPLTPPPPVLDTCVSLDNRPAPMP
HRSCTPSPPKPRPKLKPKPKPKPKSLAPHGSHPSPPSADPSLPPTVFDSV
LCAKLTAADIRLLVEHDYHGEVIVERPTDIRARVHTTLDNASTACTVVFS
LHQRNHSCRISMRRSFADSFRITNHLFDAFCSEFAARFHQLRHVPQ*