Gchil8205.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8205.t1
Unique NameGchil8205.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:685218..685766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog43151.ADAC003009-PA
PFAMszf-AD,zf-C2H2,zf-C2H2_4
Max annot lvl33208|Metazoa
Evalue0.000455
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,392S3@33154|Opisthokonta,3C83Q@33208|Metazoa,3DP4G@33213|Bilateria,425D5@6656|Arthropoda,3SUW4@50557|Insecta,4569W@7147|Diptera,45FRN@7148|Nematocera
DescriptionZinc-finger associated domain (zf-AD)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8205Gchil8205Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 685218..685766 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8205.t1.start1Gchil8205.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 685218..685220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8205.t1.CDS1Gchil8205.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 685218..685766 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8205.t1.exon1Gchil8205.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 685218..685766 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8205.t1.stop1Gchil8205.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 685764..685766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8205.t1Gchil8205.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 685218..685766 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8205.t1 ID=Gchil8205.t1|Name=Gchil8205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=183bp
MYSTHAALQQHQLKCVYFGTGHHKAHPIGVVPDKPYQCAQCLVAFKKNSN
LVKHMKLVHLGERNFECPYGECGRMFGQKSNLNSHVRAVHLHQRPFKCHK
PGCTRAFSQKSGLKAHIKTVHDGERPYKCDACSAAFGHRGDLNRHIRVLH
NKERPYECQLCPGHKTFGRKSVLARHMQTHRV*
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spliced messenger RNA

>Gchil8205.t1 ID=Gchil8205.t1|Name=Gchil8205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00004384_pilon:685218..685766+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAGCACACACGCCGCGCTTCAACAACACCAGCTCAAGTGCGTGTA
CTTTGGCACGGGGCACCACAAGGCGCATCCCATCGGCGTGGTGCCCGACA
AGCCGTATCAGTGCGCACAGTGTCTGGTGGCGTTCAAGAAGAACTCCAAC
CTGGTCAAACACATGAAGCTGGTGCATCTAGGCGAGCGCAACTTCGAATG
TCCCTATGGCGAGTGCGGTCGCATGTTTGGTCAAAAGTCCAACCTCAACA
GTCACGTACGCGCCGTTCACCTGCACCAACGCCCGTTCAAGTGTCACAAG
CCTGGGTGCACACGCGCGTTTTCGCAAAAGTCGGGGCTCAAGGCGCACAT
CAAGACGGTGCACGACGGCGAACGGCCGTACAAGTGCGACGCGTGCTCAG
CGGCATTTGGTCATCGCGGCGATCTCAACCGCCACATCCGCGTGCTGCAC
AACAAGGAGCGTCCTTACGAATGTCAGCTGTGTCCGGGACACAAGACGTT
TGGACGCAAGTCCGTTCTGGCGCGTCACATGCAAACGCACCGCGTGTAG
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protein sequence of Gchil8205.t1

>Gchil8205.t1 ID=Gchil8205.t1|Name=Gchil8205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=183bp
MYSTHAALQQHQLKCVYFGTGHHKAHPIGVVPDKPYQCAQCLVAFKKNSN
LVKHMKLVHLGERNFECPYGECGRMFGQKSNLNSHVRAVHLHQRPFKCHK
PGCTRAFSQKSGLKAHIKTVHDGERPYKCDACSAAFGHRGDLNRHIRVLH
NKERPYECQLCPGHKTFGRKSVLARHMQTHRV*
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mRNA from alignment at tig00004384_pilon:685218..685766+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8205.t1 ID=Gchil8205.t1|Name=Gchil8205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00004384_pilon:685218..685766+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACAGCACACACGCCGCGCTTCAACAACACCAGCTCAAGTGCGTGTA
CTTTGGCACGGGGCACCACAAGGCGCATCCCATCGGCGTGGTGCCCGACA
AGCCGTATCAGTGCGCACAGTGTCTGGTGGCGTTCAAGAAGAACTCCAAC
CTGGTCAAACACATGAAGCTGGTGCATCTAGGCGAGCGCAACTTCGAATG
TCCCTATGGCGAGTGCGGTCGCATGTTTGGTCAAAAGTCCAACCTCAACA
GTCACGTACGCGCCGTTCACCTGCACCAACGCCCGTTCAAGTGTCACAAG
CCTGGGTGCACACGCGCGTTTTCGCAAAAGTCGGGGCTCAAGGCGCACAT
CAAGACGGTGCACGACGGCGAACGGCCGTACAAGTGCGACGCGTGCTCAG
CGGCATTTGGTCATCGCGGCGATCTCAACCGCCACATCCGCGTGCTGCAC
AACAAGGAGCGTCCTTACGAATGTCAGCTGTGTCCGGGACACAAGACGTT
TGGACGCAAGTCCGTTCTGGCGCGTCACATGCAAACGCACCGCGTGTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:685218..685766+

>Gchil8205.t1 ID=Gchil8205.t1|Name=Gchil8205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00004384_pilon:685218..685766+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACAGCACACACGCCGCGCTTCAACAACACCAGCTCAAGTGCGTGTA
CTTTGGCACGGGGCACCACAAGGCGCATCCCATCGGCGTGGTGCCCGACA
AGCCGTATCAGTGCGCACAGTGTCTGGTGGCGTTCAAGAAGAACTCCAAC
CTGGTCAAACACATGAAGCTGGTGCATCTAGGCGAGCGCAACTTCGAATG
TCCCTATGGCGAGTGCGGTCGCATGTTTGGTCAAAAGTCCAACCTCAACA
GTCACGTACGCGCCGTTCACCTGCACCAACGCCCGTTCAAGTGTCACAAG
CCTGGGTGCACACGCGCGTTTTCGCAAAAGTCGGGGCTCAAGGCGCACAT
CAAGACGGTGCACGACGGCGAACGGCCGTACAAGTGCGACGCGTGCTCAG
CGGCATTTGGTCATCGCGGCGATCTCAACCGCCACATCCGCGTGCTGCAC
AACAAGGAGCGTCCTTACGAATGTCAGCTGTGTCCGGGACACAAGACGTT
TGGACGCAAGTCCGTTCTGGCGCGTCACATGCAAACGCACCGCGTGTAG
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