Gchil8304.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8304.t1
Unique Name	Gchil8304.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	630

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:1411948..1413837 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr43176
PFAMs	NOT2_3_5
Max annot lvl	2836\|Bacillariophyta
KEGG ko	ko:K12605
KEGG Pathway	ko03018,map03018
Evalue	2.02e-42
EggNOG OGs	COG5601@1\|root,KOG2151@2759\|Eukaryota,2XH2V@2836\|Bacillariophyta
Description	NOT2 / NOT3 / NOT5 family
COG category	DK
BRITE	ko00000,ko00001,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8304	Gchil8304	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 1411948..1413837 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8304.t1.start1	Gchil8304.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 1411948..1411950 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8304.t1.CDS1	Gchil8304.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 1411948..1413837 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8304.t1.exon1	Gchil8304.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 1411948..1413837 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8304.t1.stop1	Gchil8304.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 1413835..1413837 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8304.t1	Gchil8304.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 1411948..1413837 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:1411948..1413837+
coding sequence from alignment at tig00004384_pilon:1411948..1413837+

mRNA sequence

>Gchil8304.t1 ID=Gchil8304.t1|Name=Gchil8304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp
MSHLYYAYGAENAAGSPPSVHPPHPPHRRSPQAWSVDPRRAAAPLPLSQF
TDLSAAPAQPLSTAALMNSARPVPPSSRPTPYDDNLFHVMGKGFADPSQP
QPASSPSSRPPQQQPPFTQPHPPRTAVFDPSEFPSLGAVGAHAAMQPVSS
SFLDNNPSIDHNLTNPSLSAPNLNGMPHYQDLYSLGAYADSRVKAVDALT
GSSAPSEFTIQSEDFPALGGASASAALRQVNASAAIANGAYQIDTSALRA
SLQKAPLTESFYDRKVSSVSSLPQTVLGRVNVRQDASRIPQRGARLPNGY
TATDAMSSMPSLQQMHYAPNSHVTSQQAFRDLTSTSPTPSALSAAANRPQ
LFQTRTRQPDLGRRFEEYELLDSRESASRLNMLSQSSKPILHQESRFSRS
RMPNGQSPNTSEPHVLPSHSRGNGGNDPNTRGSGPFRSDKFGMLSLLPLV
SSGGNITRKDRVLPIGIDLTALGLNLNSHEPLYKTFHNPWEGGQGKSGDA
DTAGSSQKGQEPEYRLPTCYYMQPPALRTNHFTKFQLETLFYIFYIMPHD
VLQLLAAVELYSRKWRYHKTLKLWFTCDVEARSGYEGGYIYFDIKSWGKR
EFHEVNDNQSFIKGFMTEEELASVKIPPL*

spliced messenger RNA

>Gchil8304.t1 ID=Gchil8304.t1|Name=Gchil8304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00004384_pilon:1411948..1413837+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCACCTCTACTACGCGTACGGCGCTGAAAACGCGGCTGGCTCTCC
ACCGTCCGTGCATCCCCCACACCCTCCCCATCGCCGCTCCCCGCAGGCAT
GGTCCGTCGACCCTCGTCGAGCCGCCGCCCCGCTCCCGCTTTCTCAATTC
ACCGACTTGTCTGCTGCCCCTGCACAGCCCCTCTCAACCGCCGCTCTCAT
GAACTCGGCGCGTCCCGTGCCGCCTTCCTCTCGTCCCACCCCCTACGACG
ATAATCTTTTCCACGTTATGGGAAAGGGCTTTGCAGACCCTTCACAACCA
CAACCAGCCTCCTCGCCTTCTTCTCGTCCACCACAACAGCAACCGCCCTT
CACACAACCGCATCCCCCCCGCACCGCCGTCTTCGATCCCAGCGAGTTTC
CTTCGCTCGGAGCCGTTGGCGCCCATGCAGCCATGCAACCCGTCTCCTCT
TCATTCCTGGACAACAACCCTTCTATTGACCATAACCTCACCAACCCCTC
ACTGTCAGCGCCCAATCTTAACGGAATGCCACACTATCAAGACCTGTACA
GTTTAGGAGCGTACGCCGACTCGCGCGTCAAAGCCGTGGATGCTCTCACA
GGATCGTCCGCGCCCTCAGAATTCACCATTCAAAGCGAAGATTTTCCAGC
GCTTGGCGGAGCATCTGCTTCCGCCGCCTTGCGTCAGGTTAACGCCTCGG
CCGCCATCGCCAACGGAGCTTATCAAATCGATACTTCTGCTTTGCGCGCC
TCCTTGCAAAAGGCTCCTTTAACTGAATCCTTTTACGACCGTAAGGTGTC
TTCTGTCTCCTCACTACCTCAAACCGTGCTCGGAAGGGTCAACGTAAGAC
AAGATGCTAGTAGAATTCCCCAAAGAGGCGCGCGCTTACCAAATGGCTAC
ACGGCCACCGATGCCATGTCGTCTATGCCCTCGTTACAACAGATGCATTA
CGCGCCAAATTCTCATGTCACGTCACAACAAGCATTTCGCGATCTGACCT
CTACATCGCCAACACCATCTGCATTGAGCGCTGCGGCAAACAGACCCCAA
CTTTTTCAGACGCGTACGCGGCAACCTGACTTGGGGAGAAGATTTGAGGA
ATATGAACTACTTGACTCGAGAGAATCTGCATCCCGCCTCAACATGCTTT
CGCAAAGTTCGAAACCAATACTGCACCAAGAAAGCCGCTTTTCTCGATCG
CGCATGCCCAATGGTCAATCGCCCAACACTTCAGAGCCGCATGTGCTGCC
ATCTCACAGTCGAGGGAACGGCGGTAATGATCCAAATACAAGAGGGTCAG
GACCATTTAGATCGGACAAGTTTGGAATGTTGTCTCTATTACCTCTTGTG
TCTTCTGGTGGGAATATCACCAGAAAAGACAGGGTTTTACCGATTGGCAT
TGATCTTACAGCTCTCGGCCTAAATCTTAATTCGCATGAACCTTTGTACA
AGACATTTCACAACCCGTGGGAAGGTGGGCAAGGGAAATCGGGCGATGCC
GACACTGCTGGGTCTTCTCAGAAAGGTCAGGAGCCGGAATATAGGTTACC
AACGTGTTACTACATGCAGCCGCCCGCTTTACGAACGAACCACTTTACCA
AGTTCCAACTTGAGACTCTGTTTTACATATTCTACATCATGCCACATGAT
GTGCTTCAACTTCTTGCCGCTGTAGAGCTGTACAGCCGCAAGTGGAGATA
TCACAAGACACTCAAACTTTGGTTTACATGTGATGTGGAGGCAAGGAGCG
GTTACGAAGGGGGATATATATACTTTGACATAAAGTCATGGGGTAAGAGA
GAGTTTCATGAAGTGAACGACAATCAGTCATTCATCAAGGGTTTCATGAC
TGAGGAGGAGTTGGCATCGGTCAAAATTCCTCCTTTGTAG

protein sequence of Gchil8304.t1

>Gchil8304.t1 ID=Gchil8304.t1|Name=Gchil8304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=630bp
MSHLYYAYGAENAAGSPPSVHPPHPPHRRSPQAWSVDPRRAAAPLPLSQF
TDLSAAPAQPLSTAALMNSARPVPPSSRPTPYDDNLFHVMGKGFADPSQP
QPASSPSSRPPQQQPPFTQPHPPRTAVFDPSEFPSLGAVGAHAAMQPVSS
SFLDNNPSIDHNLTNPSLSAPNLNGMPHYQDLYSLGAYADSRVKAVDALT
GSSAPSEFTIQSEDFPALGGASASAALRQVNASAAIANGAYQIDTSALRA
SLQKAPLTESFYDRKVSSVSSLPQTVLGRVNVRQDASRIPQRGARLPNGY
TATDAMSSMPSLQQMHYAPNSHVTSQQAFRDLTSTSPTPSALSAAANRPQ
LFQTRTRQPDLGRRFEEYELLDSRESASRLNMLSQSSKPILHQESRFSRS
RMPNGQSPNTSEPHVLPSHSRGNGGNDPNTRGSGPFRSDKFGMLSLLPLV
SSGGNITRKDRVLPIGIDLTALGLNLNSHEPLYKTFHNPWEGGQGKSGDA
DTAGSSQKGQEPEYRLPTCYYMQPPALRTNHFTKFQLETLFYIFYIMPHD
VLQLLAAVELYSRKWRYHKTLKLWFTCDVEARSGYEGGYIYFDIKSWGKR
EFHEVNDNQSFIKGFMTEEELASVKIPPL*

mRNA from alignment at tig00004384_pilon:1411948..1413837+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8304.t1 ID=Gchil8304.t1|Name=Gchil8304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00004384_pilon:1411948..1413837+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCACCTCTACTACGCGTACGGCGCTGAAAACGCGGCTGGCTCTCC
ACCGTCCGTGCATCCCCCACACCCTCCCCATCGCCGCTCCCCGCAGGCAT
GGTCCGTCGACCCTCGTCGAGCCGCCGCCCCGCTCCCGCTTTCTCAATTC
ACCGACTTGTCTGCTGCCCCTGCACAGCCCCTCTCAACCGCCGCTCTCAT
GAACTCGGCGCGTCCCGTGCCGCCTTCCTCTCGTCCCACCCCCTACGACG
ATAATCTTTTCCACGTTATGGGAAAGGGCTTTGCAGACCCTTCACAACCA
CAACCAGCCTCCTCGCCTTCTTCTCGTCCACCACAACAGCAACCGCCCTT
CACACAACCGCATCCCCCCCGCACCGCCGTCTTCGATCCCAGCGAGTTTC
CTTCGCTCGGAGCCGTTGGCGCCCATGCAGCCATGCAACCCGTCTCCTCT
TCATTCCTGGACAACAACCCTTCTATTGACCATAACCTCACCAACCCCTC
ACTGTCAGCGCCCAATCTTAACGGAATGCCACACTATCAAGACCTGTACA
GTTTAGGAGCGTACGCCGACTCGCGCGTCAAAGCCGTGGATGCTCTCACA
GGATCGTCCGCGCCCTCAGAATTCACCATTCAAAGCGAAGATTTTCCAGC
GCTTGGCGGAGCATCTGCTTCCGCCGCCTTGCGTCAGGTTAACGCCTCGG
CCGCCATCGCCAACGGAGCTTATCAAATCGATACTTCTGCTTTGCGCGCC
TCCTTGCAAAAGGCTCCTTTAACTGAATCCTTTTACGACCGTAAGGTGTC
TTCTGTCTCCTCACTACCTCAAACCGTGCTCGGAAGGGTCAACGTAAGAC
AAGATGCTAGTAGAATTCCCCAAAGAGGCGCGCGCTTACCAAATGGCTAC
ACGGCCACCGATGCCATGTCGTCTATGCCCTCGTTACAACAGATGCATTA
CGCGCCAAATTCTCATGTCACGTCACAACAAGCATTTCGCGATCTGACCT
CTACATCGCCAACACCATCTGCATTGAGCGCTGCGGCAAACAGACCCCAA
CTTTTTCAGACGCGTACGCGGCAACCTGACTTGGGGAGAAGATTTGAGGA
ATATGAACTACTTGACTCGAGAGAATCTGCATCCCGCCTCAACATGCTTT
CGCAAAGTTCGAAACCAATACTGCACCAAGAAAGCCGCTTTTCTCGATCG
CGCATGCCCAATGGTCAATCGCCCAACACTTCAGAGCCGCATGTGCTGCC
ATCTCACAGTCGAGGGAACGGCGGTAATGATCCAAATACAAGAGGGTCAG
GACCATTTAGATCGGACAAGTTTGGAATGTTGTCTCTATTACCTCTTGTG
TCTTCTGGTGGGAATATCACCAGAAAAGACAGGGTTTTACCGATTGGCAT
TGATCTTACAGCTCTCGGCCTAAATCTTAATTCGCATGAACCTTTGTACA
AGACATTTCACAACCCGTGGGAAGGTGGGCAAGGGAAATCGGGCGATGCC
GACACTGCTGGGTCTTCTCAGAAAGGTCAGGAGCCGGAATATAGGTTACC
AACGTGTTACTACATGCAGCCGCCCGCTTTACGAACGAACCACTTTACCA
AGTTCCAACTTGAGACTCTGTTTTACATATTCTACATCATGCCACATGAT
GTGCTTCAACTTCTTGCCGCTGTAGAGCTGTACAGCCGCAAGTGGAGATA
TCACAAGACACTCAAACTTTGGTTTACATGTGATGTGGAGGCAAGGAGCG
GTTACGAAGGGGGATATATATACTTTGACATAAAGTCATGGGGTAAGAGA
GAGTTTCATGAAGTGAACGACAATCAGTCATTCATCAAGGGTTTCATGAC
TGAGGAGGAGTTGGCATCGGTCAAAATTCCTCCTTTGTAG

Coding sequence (CDS) from alignment at tig00004384_pilon:1411948..1413837+

>Gchil8304.t1 ID=Gchil8304.t1|Name=Gchil8304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00004384_pilon:1411948..1413837+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCACCTCTACTACGCGTACGGCGCTGAAAACGCGGCTGGCTCTCC
ACCGTCCGTGCATCCCCCACACCCTCCCCATCGCCGCTCCCCGCAGGCAT
GGTCCGTCGACCCTCGTCGAGCCGCCGCCCCGCTCCCGCTTTCTCAATTC
ACCGACTTGTCTGCTGCCCCTGCACAGCCCCTCTCAACCGCCGCTCTCAT
GAACTCGGCGCGTCCCGTGCCGCCTTCCTCTCGTCCCACCCCCTACGACG
ATAATCTTTTCCACGTTATGGGAAAGGGCTTTGCAGACCCTTCACAACCA
CAACCAGCCTCCTCGCCTTCTTCTCGTCCACCACAACAGCAACCGCCCTT
CACACAACCGCATCCCCCCCGCACCGCCGTCTTCGATCCCAGCGAGTTTC
CTTCGCTCGGAGCCGTTGGCGCCCATGCAGCCATGCAACCCGTCTCCTCT
TCATTCCTGGACAACAACCCTTCTATTGACCATAACCTCACCAACCCCTC
ACTGTCAGCGCCCAATCTTAACGGAATGCCACACTATCAAGACCTGTACA
GTTTAGGAGCGTACGCCGACTCGCGCGTCAAAGCCGTGGATGCTCTCACA
GGATCGTCCGCGCCCTCAGAATTCACCATTCAAAGCGAAGATTTTCCAGC
GCTTGGCGGAGCATCTGCTTCCGCCGCCTTGCGTCAGGTTAACGCCTCGG
CCGCCATCGCCAACGGAGCTTATCAAATCGATACTTCTGCTTTGCGCGCC
TCCTTGCAAAAGGCTCCTTTAACTGAATCCTTTTACGACCGTAAGGTGTC
TTCTGTCTCCTCACTACCTCAAACCGTGCTCGGAAGGGTCAACGTAAGAC
AAGATGCTAGTAGAATTCCCCAAAGAGGCGCGCGCTTACCAAATGGCTAC
ACGGCCACCGATGCCATGTCGTCTATGCCCTCGTTACAACAGATGCATTA
CGCGCCAAATTCTCATGTCACGTCACAACAAGCATTTCGCGATCTGACCT
CTACATCGCCAACACCATCTGCATTGAGCGCTGCGGCAAACAGACCCCAA
CTTTTTCAGACGCGTACGCGGCAACCTGACTTGGGGAGAAGATTTGAGGA
ATATGAACTACTTGACTCGAGAGAATCTGCATCCCGCCTCAACATGCTTT
CGCAAAGTTCGAAACCAATACTGCACCAAGAAAGCCGCTTTTCTCGATCG
CGCATGCCCAATGGTCAATCGCCCAACACTTCAGAGCCGCATGTGCTGCC
ATCTCACAGTCGAGGGAACGGCGGTAATGATCCAAATACAAGAGGGTCAG
GACCATTTAGATCGGACAAGTTTGGAATGTTGTCTCTATTACCTCTTGTG
TCTTCTGGTGGGAATATCACCAGAAAAGACAGGGTTTTACCGATTGGCAT
TGATCTTACAGCTCTCGGCCTAAATCTTAATTCGCATGAACCTTTGTACA
AGACATTTCACAACCCGTGGGAAGGTGGGCAAGGGAAATCGGGCGATGCC
GACACTGCTGGGTCTTCTCAGAAAGGTCAGGAGCCGGAATATAGGTTACC
AACGTGTTACTACATGCAGCCGCCCGCTTTACGAACGAACCACTTTACCA
AGTTCCAACTTGAGACTCTGTTTTACATATTCTACATCATGCCACATGAT
GTGCTTCAACTTCTTGCCGCTGTAGAGCTGTACAGCCGCAAGTGGAGATA
TCACAAGACACTCAAACTTTGGTTTACATGTGATGTGGAGGCAAGGAGCG
GTTACGAAGGGGGATATATATACTTTGACATAAAGTCATGGGGTAAGAGA
GAGTTTCATGAAGTGAACGACAATCAGTCATTCATCAAGGGTTTCATGAC
TGAGGAGGAGTTGGCATCGGTCAAAATTCCTCCTTTGTAG