Gchil8192.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8192.t1
Unique NameGchil8192.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:654764..655666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3988.XP_002524490.1
PFAMsMethyltransf_21
Max annot lvl35493|Streptophyta
Evalue1.04e-07
EggNOG OGs28MUW@1|root,2QUD5@2759|Eukaryota,37NHE@33090|Viridiplantae,3GDM5@35493|Streptophyta,4JK5E@91835|fabids
DescriptionMethyltransferase FkbM domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8192Gchil8192Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 654764..655666 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8192.t1.stop1Gchil8192.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 654764..654766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8192.t1.CDS1Gchil8192.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 654764..655666 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8192.t1.exon1Gchil8192.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 654764..655666 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8192.t1.start1Gchil8192.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 655664..655666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8192.t1Gchil8192.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 654764..655666 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8192.t1 ID=Gchil8192.t1|Name=Gchil8192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=301bp
MNPKQSKSSSRRIASVVFVVPLIFLAFFLGRELHYYRPLSDDQKQSYCKE
HLAGNRFHPITRILQKFKKPVTVLDVGAHIGFVTLPALYCLPVQHSTLTI
EPVPVNANELMRGVRRMGNAIAEKRISFRQVAFSNVSDSLKIYVPNARSD
NAALSKKASVANIGNLPLSEVNVKLRKGDDLINDMVKELGDKRLPQIVKI
DTQGQEPRVLEGMKTFLTEHRDDGLLVLAEHDKGLLKTSGFDAYPVYDFM
EGLGYRVYCMPQITVTNDGQGDIQVTGTQWTRDQMNSKRCEDLVYWAGKK
*
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spliced messenger RNA

>Gchil8192.t1 ID=Gchil8192.t1|Name=Gchil8192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00004384_pilon:654764..655666- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTAAGCAGTCGAAATCGTCAAGCAGGCGCATAGCCTCCGTCGT
ATTCGTTGTCCCGCTCATTTTCCTCGCTTTCTTCTTGGGTAGGGAATTGC
ACTATTACCGACCCCTTTCAGATGACCAAAAACAAAGCTATTGCAAAGAG
CATCTAGCGGGCAATCGCTTTCACCCTATCACTCGTATCCTTCAAAAGTT
CAAAAAACCTGTCACCGTCTTGGATGTCGGCGCTCACATAGGGTTTGTCA
CTCTGCCAGCTCTTTACTGTTTGCCTGTACAGCATTCCACACTCACTATC
GAACCTGTACCTGTGAATGCAAATGAACTCATGAGAGGCGTTCGACGCAT
GGGAAATGCGATTGCCGAGAAACGAATATCATTTCGACAGGTCGCTTTTT
CCAATGTTTCGGATTCTTTGAAAATATATGTTCCCAACGCACGTTCGGAC
AACGCTGCTTTGTCAAAGAAAGCAAGCGTAGCCAACATTGGAAATCTTCC
TTTGAGTGAGGTTAACGTTAAACTTCGTAAAGGAGATGACCTGATCAATG
ACATGGTCAAGGAGTTAGGCGACAAACGTTTACCCCAGATTGTCAAGATT
GATACCCAAGGGCAAGAACCTCGGGTCTTGGAAGGTATGAAGACATTCCT
GACCGAGCATCGTGATGATGGACTTCTTGTTCTTGCAGAACACGACAAAG
GATTGTTGAAAACCAGTGGATTTGATGCTTATCCCGTGTATGATTTTATG
GAGGGCCTTGGGTATAGAGTATATTGCATGCCTCAAATCACGGTCACCAA
TGATGGTCAGGGAGACATTCAAGTGACAGGCACTCAATGGACCAGAGATC
AGATGAACTCGAAGCGTTGTGAGGACCTTGTGTACTGGGCTGGAAAGAAG
TAA
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protein sequence of Gchil8192.t1

>Gchil8192.t1 ID=Gchil8192.t1|Name=Gchil8192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=301bp
MNPKQSKSSSRRIASVVFVVPLIFLAFFLGRELHYYRPLSDDQKQSYCKE
HLAGNRFHPITRILQKFKKPVTVLDVGAHIGFVTLPALYCLPVQHSTLTI
EPVPVNANELMRGVRRMGNAIAEKRISFRQVAFSNVSDSLKIYVPNARSD
NAALSKKASVANIGNLPLSEVNVKLRKGDDLINDMVKELGDKRLPQIVKI
DTQGQEPRVLEGMKTFLTEHRDDGLLVLAEHDKGLLKTSGFDAYPVYDFM
EGLGYRVYCMPQITVTNDGQGDIQVTGTQWTRDQMNSKRCEDLVYWAGKK
*
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mRNA from alignment at tig00004384_pilon:654764..655666-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8192.t1 ID=Gchil8192.t1|Name=Gchil8192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00004384_pilon:654764..655666- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTAAGCAGTCGAAATCGTCAAGCAGGCGCATAGCCTCCGTCGT
ATTCGTTGTCCCGCTCATTTTCCTCGCTTTCTTCTTGGGTAGGGAATTGC
ACTATTACCGACCCCTTTCAGATGACCAAAAACAAAGCTATTGCAAAGAG
CATCTAGCGGGCAATCGCTTTCACCCTATCACTCGTATCCTTCAAAAGTT
CAAAAAACCTGTCACCGTCTTGGATGTCGGCGCTCACATAGGGTTTGTCA
CTCTGCCAGCTCTTTACTGTTTGCCTGTACAGCATTCCACACTCACTATC
GAACCTGTACCTGTGAATGCAAATGAACTCATGAGAGGCGTTCGACGCAT
GGGAAATGCGATTGCCGAGAAACGAATATCATTTCGACAGGTCGCTTTTT
CCAATGTTTCGGATTCTTTGAAAATATATGTTCCCAACGCACGTTCGGAC
AACGCTGCTTTGTCAAAGAAAGCAAGCGTAGCCAACATTGGAAATCTTCC
TTTGAGTGAGGTTAACGTTAAACTTCGTAAAGGAGATGACCTGATCAATG
ACATGGTCAAGGAGTTAGGCGACAAACGTTTACCCCAGATTGTCAAGATT
GATACCCAAGGGCAAGAACCTCGGGTCTTGGAAGGTATGAAGACATTCCT
GACCGAGCATCGTGATGATGGACTTCTTGTTCTTGCAGAACACGACAAAG
GATTGTTGAAAACCAGTGGATTTGATGCTTATCCCGTGTATGATTTTATG
GAGGGCCTTGGGTATAGAGTATATTGCATGCCTCAAATCACGGTCACCAA
TGATGGTCAGGGAGACATTCAAGTGACAGGCACTCAATGGACCAGAGATC
AGATGAACTCGAAGCGTTGTGAGGACCTTGTGTACTGGGCTGGAAAGAAG
TAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:654764..655666-

>Gchil8192.t1 ID=Gchil8192.t1|Name=Gchil8192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=903bp|location=Sequence derived from alignment at tig00004384_pilon:654764..655666- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTAAGCAGTCGAAATCGTCAAGCAGGCGCATAGCCTCCGTCGT
ATTCGTTGTCCCGCTCATTTTCCTCGCTTTCTTCTTGGGTAGGGAATTGC
ACTATTACCGACCCCTTTCAGATGACCAAAAACAAAGCTATTGCAAAGAG
CATCTAGCGGGCAATCGCTTTCACCCTATCACTCGTATCCTTCAAAAGTT
CAAAAAACCTGTCACCGTCTTGGATGTCGGCGCTCACATAGGGTTTGTCA
CTCTGCCAGCTCTTTACTGTTTGCCTGTACAGCATTCCACACTCACTATC
GAACCTGTACCTGTGAATGCAAATGAACTCATGAGAGGCGTTCGACGCAT
GGGAAATGCGATTGCCGAGAAACGAATATCATTTCGACAGGTCGCTTTTT
CCAATGTTTCGGATTCTTTGAAAATATATGTTCCCAACGCACGTTCGGAC
AACGCTGCTTTGTCAAAGAAAGCAAGCGTAGCCAACATTGGAAATCTTCC
TTTGAGTGAGGTTAACGTTAAACTTCGTAAAGGAGATGACCTGATCAATG
ACATGGTCAAGGAGTTAGGCGACAAACGTTTACCCCAGATTGTCAAGATT
GATACCCAAGGGCAAGAACCTCGGGTCTTGGAAGGTATGAAGACATTCCT
GACCGAGCATCGTGATGATGGACTTCTTGTTCTTGCAGAACACGACAAAG
GATTGTTGAAAACCAGTGGATTTGATGCTTATCCCGTGTATGATTTTATG
GAGGGCCTTGGGTATAGAGTATATTGCATGCCTCAAATCACGGTCACCAA
TGATGGTCAGGGAGACATTCAAGTGACAGGCACTCAATGGACCAGAGATC
AGATGAACTCGAAGCGTTGTGAGGACCTTGTGTACTGGGCTGGAAAGAAG
TAA
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