Gchil8225.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil8225.t1
Unique Name	Gchil8225.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	360

Homology

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BLAST of Gchil8225.t1 vs. uniprot
Match: A0A2V3IPX7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX7_9FLOR)

HSP 1 Score: 318 bits (816), Expect = 1.390e-103
Identity = 204/388 (52.58%), Postives = 253/388 (65.21%), Query Frame = 0

Query:    1 MSAFQQAPKLPREPTLIRDQALTANPATPPRLTSTQSPPSPP-------PFPESLSTTDHVSPSSIPHPTVTHFPKLQI---YPAVSPQHA------------AESPAPPVPKLSSDTPKEMPLPPKFPSIHDEPAWTSPQSSQTPVSAQVSNASPVASTAA-PNSEASPTQPTHAVSWNRASSDNLSASLSQQPLQPEQSTKSEEKKGVFAKVVAMFKPNKN------QLSETSEPASPSKPPLQKVKDIICKLPDPTLIFVLQASIILLLHTFVPHVLRSWPARIVIPLFLVPTVAATAFWRRTIVIVKPGKSVLSIVKPVPNAGRVVSKGGTLRAREAAVIAAEEKVKEGQVRLEVLRKEIEARLPPQDSITSLLESDKRAQEAS 359
            MS F +AP LPREPTLIRDQ+L+    T P   ST+  PSPP       PFPE  S TD V P     P   H PKL +   +P   P+ A            A  P PP  K   D PK+                          S+ ++  SP+AS++A P SE SP+QP   VSWNR SSDNLSASLSQ   QPE+   ++E KG+ A ++A+ K  K+      +L +  + ASPSKPP+QKVK+++C LPDPTL+FVL+AS+ILL+H F PHVLRSWPARIV+PL LVPTVAATA WRRT+VI +PG ++LS+VKP+PNAG VV+ G TLRARE AV+AAEE+V+EGQ+RLE+LRKEIEARLPPQ+SI SLLESDK+AQ  S
Sbjct:    1 MSNFAEAPPLPREPTLIRDQSLSR---TQP---STEQSPSPPSLXXXXLPFPEVDSATDVVHPXXXXKP---HSPKLTLPPKFPKFHPEIAETVQKNTTVAPSATPPPPPTAKTPKDAPKQXXXXXXXXXXXXXXXXXXXXXXXXXXSSHLNQTSPLASSSAQPASEPSPSQPIPEVSWNRLSSDNLSASLSQPLTQPEEGANADESKGILANILALLKRKKSGSEERDELLQNVQNASPSKPPIQKVKEMVCNLPDPTLVFVLEASVILLIHAFAPHVLRSWPARIVVPLLLVPTVAATALWRRTVVIARPGTTILSLVKPIPNAGMVVNMGETLRAREVAVLAAEERVREGQMRLEMLRKEIEARLPPQESIASLLESDKKAQATS 379

The following BLAST results are available for this feature:

BLAST of Gchil8225.t1 vs. uniprot

BLAST of Gchil8225.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IPX7_9FLOR	1.390e-103	52.58	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 314..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..46
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 249..253
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..229
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 254..274
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 275..359
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 230..248

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:733833..734912 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8225.t1	Gchil8225.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004384_pilon 733833..734912 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil8225.t1 ID=Gchil8225.t1|Name=Gchil8225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MSAFQQAPKLPREPTLIRDQALTANPATPPRLTSTQSPPSPPPFPESLST
TDHVSPSSIPHPTVTHFPKLQIYPAVSPQHAAESPAPPVPKLSSDTPKEM
PLPPKFPSIHDEPAWTSPQSSQTPVSAQVSNASPVASTAAPNSEASPTQP
THAVSWNRASSDNLSASLSQQPLQPEQSTKSEEKKGVFAKVVAMFKPNKN
QLSETSEPASPSKPPLQKVKDIICKLPDPTLIFVLQASIILLLHTFVPHV
LRSWPARIVIPLFLVPTVAATAFWRRTIVIVKPGKSVLSIVKPVPNAGRV
VSKGGTLRAREAAVIAAEEKVKEGQVRLEVLRKEIEARLPPQDSITSLLE
SDKRAQEAS*