Gchil8203.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8203.t1
Unique NameGchil8203.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:679643..680731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010684384.1
Preferred namePHR2
PFAMsDNA_photolyase
Max annot lvl35493|Streptophyta
KEGG koko:K01669
Evalue3.57e-18
EggNOG OGsCOG0415@1|root,KOG0133@2759|Eukaryota,37PJX@33090|Viridiplantae,3GDKD@35493|Streptophyta
EC4.1.99.3
DescriptionBlue-light photoreceptor
COG categoryLT
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8203Gchil8203Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 679643..680731 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8203.t1.stop1Gchil8203.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 679643..679645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8203.t1.CDS1Gchil8203.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 679643..680731 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8203.t1.exon1Gchil8203.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 679643..680731 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8203.t1.start1Gchil8203.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 680729..680731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8203.t1Gchil8203.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 679643..680731 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8203.t1 ID=Gchil8203.t1|Name=Gchil8203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=363bp
MPNAIVSAFVAPLSRPAPPAPRPPLTSVAPAAPVARAADATRATPRSAAS
SSAQPLTTAESRRASTHAERAPPVGAARHPVVVVWFRRDLRLHDNACVAD
LHHAVVAPLLLLPSSPPPLLLAAARDLRAALRARGAELYVRHATHDAPAV
ATAVRRFCEHVRADYLHVAADVRREARVAELRVRREVAALGVRTVAFWSD
GLLSPEQLPFSVQDMPDDCDAFADAVRHVRIAEPLPAPLRLRGVRARVSP
GHIPPNCCQYADDDGRRRDDEQREDEERGGEREALQRLQEYCSGALARVQ
KGRLHTSFGRLGPFLELGCVSARLLWWRAVAPAQRTVRRYCAEFELMLRE
FSRFDSLRRLPQ*
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spliced messenger RNA

>Gchil8203.t1 ID=Gchil8203.t1|Name=Gchil8203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004384_pilon:679643..680731- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAACGCCATCGTCAGCGCCTTCGTCGCGCCGCTGTCGCGGCCAGC
TCCACCCGCGCCGCGCCCGCCGCTCACGTCGGTCGCGCCCGCAGCGCCGG
TGGCACGCGCGGCTGACGCCACGCGCGCCACGCCGCGCTCCGCAGCGTCG
TCGTCGGCGCAGCCGCTCACAACAGCCGAGTCTCGTCGCGCCTCCACGCA
CGCCGAGCGCGCGCCCCCCGTCGGTGCCGCACGCCACCCGGTAGTGGTGG
TATGGTTCCGTCGCGACCTCCGTCTTCACGACAACGCCTGCGTGGCCGAT
CTGCACCACGCCGTCGTGGCGCCTCTACTACTACTTCCGTCATCCCCGCC
CCCGCTCCTACTTGCCGCCGCACGCGACCTACGCGCCGCGCTGCGCGCCC
GCGGCGCAGAGCTCTACGTGCGGCACGCAACGCACGACGCACCCGCCGTT
GCCACCGCCGTGCGTCGCTTCTGCGAGCATGTGCGCGCAGATTATCTGCA
CGTTGCCGCCGATGTGAGACGCGAGGCGCGTGTCGCGGAGCTTCGCGTCA
GACGAGAGGTGGCTGCTTTGGGCGTGCGCACTGTTGCGTTTTGGAGCGAT
GGACTGCTCAGTCCTGAGCAGCTGCCGTTCTCCGTGCAGGACATGCCTGA
CGATTGCGACGCGTTTGCCGACGCTGTGCGACACGTGCGCATCGCGGAGC
CGTTGCCAGCGCCGTTGCGGCTGCGCGGCGTGCGCGCGCGCGTGTCGCCC
GGTCATATCCCGCCCAACTGCTGCCAGTACGCAGACGACGACGGGCGACG
GCGAGACGACGAGCAGCGAGAAGACGAGGAACGAGGCGGCGAGCGCGAGG
CGCTACAAAGGCTGCAAGAGTATTGTAGCGGCGCGCTAGCGCGCGTGCAG
AAAGGCCGTCTACACACCAGCTTCGGCCGTCTGGGCCCGTTTCTGGAGCT
GGGCTGCGTGTCGGCGCGTCTGCTGTGGTGGCGCGCCGTGGCGCCTGCGC
AGCGTACCGTGCGTCGCTACTGCGCTGAGTTCGAGCTTATGCTACGCGAG
TTCTCACGCTTCGACTCCCTTCGTCGACTGCCCCAGTAA
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protein sequence of Gchil8203.t1

>Gchil8203.t1 ID=Gchil8203.t1|Name=Gchil8203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=363bp
MPNAIVSAFVAPLSRPAPPAPRPPLTSVAPAAPVARAADATRATPRSAAS
SSAQPLTTAESRRASTHAERAPPVGAARHPVVVVWFRRDLRLHDNACVAD
LHHAVVAPLLLLPSSPPPLLLAAARDLRAALRARGAELYVRHATHDAPAV
ATAVRRFCEHVRADYLHVAADVRREARVAELRVRREVAALGVRTVAFWSD
GLLSPEQLPFSVQDMPDDCDAFADAVRHVRIAEPLPAPLRLRGVRARVSP
GHIPPNCCQYADDDGRRRDDEQREDEERGGEREALQRLQEYCSGALARVQ
KGRLHTSFGRLGPFLELGCVSARLLWWRAVAPAQRTVRRYCAEFELMLRE
FSRFDSLRRLPQ*
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mRNA from alignment at tig00004384_pilon:679643..680731-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8203.t1 ID=Gchil8203.t1|Name=Gchil8203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004384_pilon:679643..680731- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAACGCCATCGTCAGCGCCTTCGTCGCGCCGCTGTCGCGGCCAGC
TCCACCCGCGCCGCGCCCGCCGCTCACGTCGGTCGCGCCCGCAGCGCCGG
TGGCACGCGCGGCTGACGCCACGCGCGCCACGCCGCGCTCCGCAGCGTCG
TCGTCGGCGCAGCCGCTCACAACAGCCGAGTCTCGTCGCGCCTCCACGCA
CGCCGAGCGCGCGCCCCCCGTCGGTGCCGCACGCCACCCGGTAGTGGTGG
TATGGTTCCGTCGCGACCTCCGTCTTCACGACAACGCCTGCGTGGCCGAT
CTGCACCACGCCGTCGTGGCGCCTCTACTACTACTTCCGTCATCCCCGCC
CCCGCTCCTACTTGCCGCCGCACGCGACCTACGCGCCGCGCTGCGCGCCC
GCGGCGCAGAGCTCTACGTGCGGCACGCAACGCACGACGCACCCGCCGTT
GCCACCGCCGTGCGTCGCTTCTGCGAGCATGTGCGCGCAGATTATCTGCA
CGTTGCCGCCGATGTGAGACGCGAGGCGCGTGTCGCGGAGCTTCGCGTCA
GACGAGAGGTGGCTGCTTTGGGCGTGCGCACTGTTGCGTTTTGGAGCGAT
GGACTGCTCAGTCCTGAGCAGCTGCCGTTCTCCGTGCAGGACATGCCTGA
CGATTGCGACGCGTTTGCCGACGCTGTGCGACACGTGCGCATCGCGGAGC
CGTTGCCAGCGCCGTTGCGGCTGCGCGGCGTGCGCGCGCGCGTGTCGCCC
GGTCATATCCCGCCCAACTGCTGCCAGTACGCAGACGACGACGGGCGACG
GCGAGACGACGAGCAGCGAGAAGACGAGGAACGAGGCGGCGAGCGCGAGG
CGCTACAAAGGCTGCAAGAGTATTGTAGCGGCGCGCTAGCGCGCGTGCAG
AAAGGCCGTCTACACACCAGCTTCGGCCGTCTGGGCCCGTTTCTGGAGCT
GGGCTGCGTGTCGGCGCGTCTGCTGTGGTGGCGCGCCGTGGCGCCTGCGC
AGCGTACCGTGCGTCGCTACTGCGCTGAGTTCGAGCTTATGCTACGCGAG
TTCTCACGCTTCGACTCCCTTCGTCGACTGCCCCAGTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:679643..680731-

>Gchil8203.t1 ID=Gchil8203.t1|Name=Gchil8203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00004384_pilon:679643..680731- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAACGCCATCGTCAGCGCCTTCGTCGCGCCGCTGTCGCGGCCAGC
TCCACCCGCGCCGCGCCCGCCGCTCACGTCGGTCGCGCCCGCAGCGCCGG
TGGCACGCGCGGCTGACGCCACGCGCGCCACGCCGCGCTCCGCAGCGTCG
TCGTCGGCGCAGCCGCTCACAACAGCCGAGTCTCGTCGCGCCTCCACGCA
CGCCGAGCGCGCGCCCCCCGTCGGTGCCGCACGCCACCCGGTAGTGGTGG
TATGGTTCCGTCGCGACCTCCGTCTTCACGACAACGCCTGCGTGGCCGAT
CTGCACCACGCCGTCGTGGCGCCTCTACTACTACTTCCGTCATCCCCGCC
CCCGCTCCTACTTGCCGCCGCACGCGACCTACGCGCCGCGCTGCGCGCCC
GCGGCGCAGAGCTCTACGTGCGGCACGCAACGCACGACGCACCCGCCGTT
GCCACCGCCGTGCGTCGCTTCTGCGAGCATGTGCGCGCAGATTATCTGCA
CGTTGCCGCCGATGTGAGACGCGAGGCGCGTGTCGCGGAGCTTCGCGTCA
GACGAGAGGTGGCTGCTTTGGGCGTGCGCACTGTTGCGTTTTGGAGCGAT
GGACTGCTCAGTCCTGAGCAGCTGCCGTTCTCCGTGCAGGACATGCCTGA
CGATTGCGACGCGTTTGCCGACGCTGTGCGACACGTGCGCATCGCGGAGC
CGTTGCCAGCGCCGTTGCGGCTGCGCGGCGTGCGCGCGCGCGTGTCGCCC
GGTCATATCCCGCCCAACTGCTGCCAGTACGCAGACGACGACGGGCGACG
GCGAGACGACGAGCAGCGAGAAGACGAGGAACGAGGCGGCGAGCGCGAGG
CGCTACAAAGGCTGCAAGAGTATTGTAGCGGCGCGCTAGCGCGCGTGCAG
AAAGGCCGTCTACACACCAGCTTCGGCCGTCTGGGCCCGTTTCTGGAGCT
GGGCTGCGTGTCGGCGCGTCTGCTGTGGTGGCGCGCCGTGGCGCCTGCGC
AGCGTACCGTGCGTCGCTACTGCGCTGAGTTCGAGCTTATGCTACGCGAG
TTCTCACGCTTCGACTCCCTTCGTCGACTGCCCCAGTAA
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