Gchil8308.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8308.t1
Unique NameGchil8308.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1474317..1475122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8308Gchil8308Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1474317..1475122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8308.t1Gchil8308.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1474317..1475122 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8308.t1.stop1Gchil8308.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1474317..1474319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8308.t1.CDS1Gchil8308.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1474317..1474430 -
Gchil8308.t1.CDS2Gchil8308.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1474520..1475122 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8308.t1.exon1Gchil8308.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1474317..1474430 -
Gchil8308.t1.exon2Gchil8308.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1474520..1475122 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8308.t1.intron1Gchil8308.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1474431..1474519 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8308.t1.start1Gchil8308.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1475120..1475122 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8308.t1 ID=Gchil8308.t1|Name=Gchil8308.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=239bp
MTGASNAQRTLNDSQLRTASPPQNATHKRHQLHVQQPPAKRIKAPVARLR
GAAYTFDEVVHLLHLVEDALPVSDDEWIAINHSHMSKYPHTLRTTTSLRS
KFSTFQRASFLPGSQWIALQSRAKKLQTMIVERRKKNKKVITLSLQQRAR
RIHALIEARKRSASAKPQGATESVDETRTIPFNRHNHSFTYESSTKECED
QVRGQYSYETRSVLAMLNLSRSLMLLALLVFKKRMLYE*
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spliced messenger RNA

>Gchil8308.t1 ID=Gchil8308.t1|Name=Gchil8308.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00004384_pilon:1474317..1475122- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGAGCGAGCAACGCGCAACGTACCCTGAATGATTCTCAACTGCG
CACCGCGTCTCCGCCACAAAACGCAACGCACAAACGGCATCAGCTTCACG
TTCAACAACCACCAGCAAAGAGGATCAAAGCGCCCGTCGCGCGTCTGCGT
GGAGCTGCTTACACTTTCGACGAGGTTGTGCATCTTCTCCACCTTGTTGA
GGATGCTTTACCGGTTTCGGACGACGAATGGATTGCAATTAACCATTCAC
ACATGAGCAAGTATCCGCACACACTTAGAACTACTACATCACTGCGCTCA
AAGTTTTCCACTTTTCAACGTGCCTCTTTTCTGCCTGGATCACAGTGGAT
TGCGCTTCAGTCCCGGGCGAAAAAACTTCAAACCATGATTGTGGAACGAA
GAAAGAAGAATAAGAAAGTAATAACGCTTTCACTACAGCAACGCGCCAGG
AGAATCCATGCCTTAATTGAGGCTCGAAAGAGAAGCGCCAGCGCAAAACC
CCAAGGAGCTACCGAATCCGTTGATGAGACCCGAACGATTCCCTTCAATC
GCCATAATCACTCTTTCACGTACGAGTCAAGCACGAAAGAATGTGAAGAT
CAAGTTCGAGGACAATATTCGTACGAAACGAGGAGTGTGTTGGCGATGCT
AAATTTGAGCCGGTCGCTTATGCTACTAGCCTTACTAGTTTTTAAGAAAA
GGATGCTGTACGAGTGA
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protein sequence of Gchil8308.t1

>Gchil8308.t1 ID=Gchil8308.t1|Name=Gchil8308.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=239bp
MTGASNAQRTLNDSQLRTASPPQNATHKRHQLHVQQPPAKRIKAPVARLR
GAAYTFDEVVHLLHLVEDALPVSDDEWIAINHSHMSKYPHTLRTTTSLRS
KFSTFQRASFLPGSQWIALQSRAKKLQTMIVERRKKNKKVITLSLQQRAR
RIHALIEARKRSASAKPQGATESVDETRTIPFNRHNHSFTYESSTKECED
QVRGQYSYETRSVLAMLNLSRSLMLLALLVFKKRMLYE*
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mRNA from alignment at tig00004384_pilon:1474317..1475122-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8308.t1 ID=Gchil8308.t1|Name=Gchil8308.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=806bp|location=Sequence derived from alignment at tig00004384_pilon:1474317..1475122- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGGAGCGAGCAACGCGCAACGTACCCTGAATGATTCTCAACTGCG
CACCGCGTCTCCGCCACAAAACGCAACGCACAAACGGCATCAGCTTCACG
TTCAACAACCACCAGCAAAGAGGATCAAAGCGCCCGTCGCGCGTCTGCGT
GGAGCTGCTTACACTTTCGACGAGGTTGTGCATCTTCTCCACCTTGTTGA
GGATGCTTTACCGGTTTCGGACGACGAATGGATTGCAATTAACCATTCAC
ACATGAGCAAGTATCCGCACACACTTAGAACTACTACATCACTGCGCTCA
AAGTTTTCCACTTTTCAACGTGCCTCTTTTCTGCCTGGATCACAGTGGAT
TGCGCTTCAGTCCCGGGCGAAAAAACTTCAAACCATGATTGTGGAACGAA
GAAAGAAGAATAAGAAAGTAATAACGCTTTCACTACAGCAACGCGCCAGG
AGAATCCATGCCTTAATTGAGGCTCGAAAGAGAAGCGCCAGCGCAAAACC
CCAAGGAGCTACCGAATCCGTTGATGAGACCCGAACGATTCCCTTCAATC
GCCATAATCACTCTTTCACGTACGAGTCAAGCACGAAAGAATGTGAAGAT
CAAGTAAGTTTTCTACGCTTGCAGGAGAACAATTTTAGCTGGTATTGAGT
TGCTGACTAGTTTCTTGTTTTGCGTTTGCTTTTGCAACTAAGGTTCGAGG
ACAATATTCGTACGAAACGAGGAGTGTGTTGGCGATGCTAAATTTGAGCC
GGTCGCTTATGCTACTAGCCTTACTAGTTTTTAAGAAAAGGATGCTGTAC
GAGTGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:1474317..1475122-

>Gchil8308.t1 ID=Gchil8308.t1|Name=Gchil8308.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00004384_pilon:1474317..1475122- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGGAGCGAGCAACGCGCAACGTACCCTGAATGATTCTCAACTGCG
CACCGCGTCTCCGCCACAAAACGCAACGCACAAACGGCATCAGCTTCACG
TTCAACAACCACCAGCAAAGAGGATCAAAGCGCCCGTCGCGCGTCTGCGT
GGAGCTGCTTACACTTTCGACGAGGTTGTGCATCTTCTCCACCTTGTTGA
GGATGCTTTACCGGTTTCGGACGACGAATGGATTGCAATTAACCATTCAC
ACATGAGCAAGTATCCGCACACACTTAGAACTACTACATCACTGCGCTCA
AAGTTTTCCACTTTTCAACGTGCCTCTTTTCTGCCTGGATCACAGTGGAT
TGCGCTTCAGTCCCGGGCGAAAAAACTTCAAACCATGATTGTGGAACGAA
GAAAGAAGAATAAGAAAGTAATAACGCTTTCACTACAGCAACGCGCCAGG
AGAATCCATGCCTTAATTGAGGCTCGAAAGAGAAGCGCCAGCGCAAAACC
CCAAGGAGCTACCGAATCCGTTGATGAGACCCGAACGATTCCCTTCAATC
GCCATAATCACTCTTTCACGTACGAGTCAAGCACGAAAGAATGTGAAGAT
CAAGTTCGAGGACAATATTCGTACGAAACGAGGAGTGTGTTGGCGATGCT
AAATTTGAGCCGGTCGCTTATGCTACTAGCCTTACTAGTTTTTAAGAAAA
GGATGCTGTACGAGTGA
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