Gchil8230.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8230.t1
Unique NameGchil8230.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:751462..752088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708706.1
PFAMs5-FTHF_cyc-lig
Max annot lvl2759|Eukaryota
KEGG rclassRC00183
KEGG koko:K01934
KEGG ReactionR02301
KEGG Pathwayko00670,ko01100,map00670,map01100
Evalue3.09e-35
EggNOG OGsCOG0212@1|root,KOG3093@2759|Eukaryota
EC6.3.3.2
Description5-formyltetrahydrofolate cyclo-ligase activity
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8230Gchil8230Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 751462..752088 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8230.t1.stop1Gchil8230.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 751462..751464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8230.t1.CDS1Gchil8230.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 751462..752088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8230.t1.exon1Gchil8230.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 751462..752088 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8230.t1.start1Gchil8230.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 752086..752088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8230.t1Gchil8230.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 751462..752088 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8230.t1 ID=Gchil8230.t1|Name=Gchil8230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=209bp
MKNGPDATRLLKKELRSRIRSALRSLSQSAVDQESLRVIKRFTESTVYRN
ASSLALYAPMPYEFNTISLITKAFNDTKQVFLPRVVSKESHTMIMLECKS
MAELNSWHPNSWKIREPPFEEGRLQAPGDVQLDIVVVPGVAFDALGRRCG
QGMGFYDKYLSSYSKSSESMPHLISLALSVQMVDMVPTDDFDWLMDEVMF
ENGGQEES*
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spliced messenger RNA

>Gchil8230.t1 ID=Gchil8230.t1|Name=Gchil8230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00004384_pilon:751462..752088- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAACGGCCCAGATGCCACCAGGCTTCTTAAGAAAGAACTTAGAAG
CCGAATCCGATCAGCCCTGCGATCACTTTCACAATCTGCCGTAGATCAAG
AGAGCTTACGCGTTATCAAACGATTCACAGAATCCACTGTATACCGAAAT
GCCTCGTCTCTCGCATTGTATGCCCCAATGCCATATGAGTTCAACACCAT
CTCTCTTATTACAAAAGCCTTTAACGATACGAAGCAAGTTTTTCTACCCA
GAGTCGTTTCGAAGGAGAGCCACACTATGATTATGTTAGAATGCAAAAGT
ATGGCCGAATTGAACTCCTGGCATCCAAACTCTTGGAAAATCCGCGAACC
GCCATTTGAGGAAGGACGACTGCAAGCTCCGGGAGATGTTCAACTTGACA
TCGTTGTTGTTCCAGGGGTAGCATTCGATGCACTGGGTCGTCGCTGTGGA
CAGGGAATGGGCTTTTACGATAAGTATTTGTCGTCATATTCCAAATCTTC
CGAAAGTATGCCGCATCTAATATCGCTAGCCCTTTCTGTGCAAATGGTAG
ATATGGTTCCTACTGACGATTTCGATTGGCTCATGGACGAAGTCATGTTC
GAAAATGGAGGTCAAGAAGAGTCATAA
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protein sequence of Gchil8230.t1

>Gchil8230.t1 ID=Gchil8230.t1|Name=Gchil8230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=209bp
MKNGPDATRLLKKELRSRIRSALRSLSQSAVDQESLRVIKRFTESTVYRN
ASSLALYAPMPYEFNTISLITKAFNDTKQVFLPRVVSKESHTMIMLECKS
MAELNSWHPNSWKIREPPFEEGRLQAPGDVQLDIVVVPGVAFDALGRRCG
QGMGFYDKYLSSYSKSSESMPHLISLALSVQMVDMVPTDDFDWLMDEVMF
ENGGQEES*
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mRNA from alignment at tig00004384_pilon:751462..752088-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8230.t1 ID=Gchil8230.t1|Name=Gchil8230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00004384_pilon:751462..752088- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAACGGCCCAGATGCCACCAGGCTTCTTAAGAAAGAACTTAGAAG
CCGAATCCGATCAGCCCTGCGATCACTTTCACAATCTGCCGTAGATCAAG
AGAGCTTACGCGTTATCAAACGATTCACAGAATCCACTGTATACCGAAAT
GCCTCGTCTCTCGCATTGTATGCCCCAATGCCATATGAGTTCAACACCAT
CTCTCTTATTACAAAAGCCTTTAACGATACGAAGCAAGTTTTTCTACCCA
GAGTCGTTTCGAAGGAGAGCCACACTATGATTATGTTAGAATGCAAAAGT
ATGGCCGAATTGAACTCCTGGCATCCAAACTCTTGGAAAATCCGCGAACC
GCCATTTGAGGAAGGACGACTGCAAGCTCCGGGAGATGTTCAACTTGACA
TCGTTGTTGTTCCAGGGGTAGCATTCGATGCACTGGGTCGTCGCTGTGGA
CAGGGAATGGGCTTTTACGATAAGTATTTGTCGTCATATTCCAAATCTTC
CGAAAGTATGCCGCATCTAATATCGCTAGCCCTTTCTGTGCAAATGGTAG
ATATGGTTCCTACTGACGATTTCGATTGGCTCATGGACGAAGTCATGTTC
GAAAATGGAGGTCAAGAAGAGTCATAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:751462..752088-

>Gchil8230.t1 ID=Gchil8230.t1|Name=Gchil8230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00004384_pilon:751462..752088- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAACGGCCCAGATGCCACCAGGCTTCTTAAGAAAGAACTTAGAAG
CCGAATCCGATCAGCCCTGCGATCACTTTCACAATCTGCCGTAGATCAAG
AGAGCTTACGCGTTATCAAACGATTCACAGAATCCACTGTATACCGAAAT
GCCTCGTCTCTCGCATTGTATGCCCCAATGCCATATGAGTTCAACACCAT
CTCTCTTATTACAAAAGCCTTTAACGATACGAAGCAAGTTTTTCTACCCA
GAGTCGTTTCGAAGGAGAGCCACACTATGATTATGTTAGAATGCAAAAGT
ATGGCCGAATTGAACTCCTGGCATCCAAACTCTTGGAAAATCCGCGAACC
GCCATTTGAGGAAGGACGACTGCAAGCTCCGGGAGATGTTCAACTTGACA
TCGTTGTTGTTCCAGGGGTAGCATTCGATGCACTGGGTCGTCGCTGTGGA
CAGGGAATGGGCTTTTACGATAAGTATTTGTCGTCATATTCCAAATCTTC
CGAAAGTATGCCGCATCTAATATCGCTAGCCCTTTCTGTGCAAATGGTAG
ATATGGTTCCTACTGACGATTTCGATTGGCTCATGGACGAAGTCATGTTC
GAAAATGGAGGTCAAGAAGAGTCATAA
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