Gchil8273.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8273.t1
Unique NameGchil8273.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length216
Homology
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BLAST of Gchil8273.t1 vs. uniprot
Match: A0A2V3IM81_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM81_9FLOR)

HSP 1 Score: 328 bits (840), Expect = 4.550e-112
Identity = 163/192 (84.90%), Postives = 174/192 (90.62%), Query Frame = 0 
Query:    6 STASLSLAVGASPRFTVSSAPNGVRTAVLAGAAVFSGLVYLLRRGHADGVRKRVIRRLDKIAPKSKYHPHKHAHGHIINADCPVCLCEFASDADKPIRVLGCRHALCSDCLEAWAVHCTKAHLNPSRFGITRAGRVVSWTPGPKCPLCCARLNCVPKQDLREAIIAAINHRGTALSTIIAYQSRHSNDEAIE 197
            S ASLSLAVG  P FTV++APNG+RTAVLAGAAVFSGLVYLLR+GHADGVRKRVIRRLDKIAP++KY   KHA   IINADCPVCL EF+S  DK IRVL CRHALCSDCLEAWAVHCTKAHLNPSRFGITRAGRVVSWTPGPKCPLCCARLNCVPK+DLREAIIAA+NHRGTALSTIIAYQSR S+D+  E
Sbjct:    6 SAASLSLAVGGGPGFTVNNAPNGIRTAVLAGAAVFSGLVYLLRKGHADGVRKRVIRRLDKIAPRTKYRSDKHAQRRIINADCPVCLGEFSSTPDKYIRVLECRHALCSDCLEAWAVHCTKAHLNPSRFGITRAGRVVSWTPGPKCPLCCARLNCVPKEDLREAIIAAVNHRGTALSTIIAYQSRSSSDDDFE 197
The following BLAST results are available for this feature:
BLAST of Gchil8273.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IM81_9FLOR4.550e-11284.90RING-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 87..153
e-value: 3.0E-5
score: 33.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 87..153
score: 9.804232
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 65..206
e-value: 2.4E-8
score: 35.7
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 107..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..215
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 81..158
NoneNo IPR availableTMHMMTMhelixcoord: 28..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:987658..988370 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8273.t1Gchil8273.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 987658..988370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8273.t1 ID=Gchil8273.t1|Name=Gchil8273.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=216bp
MQPSTSTASLSLAVGASPRFTVSSAPNGVRTAVLAGAAVFSGLVYLLRRG
HADGVRKRVIRRLDKIAPKSKYHPHKHAHGHIINADCPVCLCEFASDADK
PIRVLGCRHALCSDCLEAWAVHCTKAHLNPSRFGITRAGRVVSWTPGPKC
PLCCARLNCVPKQDLREAIIAAINHRGTALSTIIAYQSRHSNDEAIENTS
FNWAATDASASHHRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS