Gchil7501.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7501.t1
Unique Name	Gchil7501.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	692

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1620323..1622398 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	329726.AM1_4499
Preferred name	gyrB
PFAMs	DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Intein_splicing,Toprim
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K02470
Evalue	1.01e-302
EggNOG OGs	COG0187@1\|root,COG0187@2\|Bacteria,1G139@1117\|Cyanobacteria
EC	5.99.1.3
Description	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
COG category	L
BRITE	ko00000,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7501	Gchil7501	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1620323..1622398 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7501.t1.start1	Gchil7501.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1620323..1620325 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7501.t1.CDS1	Gchil7501.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1620323..1622398 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7501.t1.exon1	Gchil7501.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1620323..1622398 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7501.t1.stop1	Gchil7501.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1622396..1622398 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7501.t1	Gchil7501.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1620323..1622398 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1620323..1622398+
coding sequence from alignment at tig00000007_pilon:1620323..1622398+

mRNA sequence

>Gchil7501.t1 ID=Gchil7501.t1|Name=Gchil7501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=692bp
MPRLRPAFVSSIAFRTHRLFCGSELTLSRRRRLFPTRPSFTSVRLTASLP
SRTQYGASDITVLEGLEPVRMRPGMYIGSTGSKGLHHLVFEVVDNAVDES
LAGFCKKITVILHADGSVSVQDDGRGIPIDKHTATGKSALETVMTVLHSG
GKFGGAGYSVSGGLHGVGVSVVNALSEWLSVKVWREGRRHTMKFSRGSVL
EPLEEQDDTQRNSGTSVRFLPDRQIFTTTTQFDLDVLTQRLEELAFLNAG
LEIVLTKEIDGETRRFLHDGGIEEYISALSTTYESLHKDPETIFFSGETN
NNFVEVAMRWNADSYSDKLIGFANNIRTNDGGSHLEGLRAALTRTINQLA
RRAGKLKDSANNIGGEYIREGLIAIVSVKVPNPEFEGQTKSRLGNPEVRS
AVDGIVARSLIDFFDFRPNILTSVVDKAMSALAAAEAARRARDIVRRKTV
LENSTLPGKLADCSSRDPSASEIFIVEGESAGGSAKQARDRQFQAILPLR
GKILNIEKTDDAKIYQNSEIQALITALGLGVRGDEFKANQLRYHRIIIMT
DADVDGAHIRTLLLTFFFRYQRALIENGFVYIACPPLYKIDRRQKSVFLY
SDEELQDYVKEKMPPNARYTVQRFKGLGEMMPGQLWNTTMNPYERQVKRV
EIEDAMLADQVFTVLMGDRVAPRRAFIESHVASLSLEDIDY*

spliced messenger RNA

>Gchil7501.t1 ID=Gchil7501.t1|Name=Gchil7501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00000007_pilon:1620323..1622398+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGTCTTCGTCCGGCCTTTGTGTCCAGTATTGCTTTCCGTACCCA
TCGTCTATTCTGTGGGTCCGAACTTACTTTGTCGCGACGTCGGAGGCTCT
TCCCAACTCGTCCTTCTTTCACCTCAGTTCGTTTAACCGCCTCCCTGCCC
TCGAGAACGCAGTATGGTGCCAGCGATATTACCGTGCTGGAAGGCTTAGA
GCCAGTGCGCATGCGACCGGGCATGTACATCGGCTCCACTGGTTCGAAAG
GGCTGCATCACCTCGTCTTTGAAGTCGTTGACAACGCGGTCGACGAGTCG
CTAGCCGGATTTTGCAAGAAAATTACCGTTATTCTTCATGCGGATGGTTC
TGTCAGTGTTCAAGACGATGGACGAGGGATACCAATTGATAAGCATACAG
CTACTGGTAAGAGTGCGTTGGAGACTGTTATGACTGTCTTACATTCCGGC
GGAAAATTTGGCGGAGCTGGATACTCGGTCTCTGGTGGTTTGCATGGCGT
GGGCGTCAGCGTGGTTAATGCGCTCAGCGAATGGCTTTCGGTCAAGGTAT
GGCGGGAAGGACGCCGCCACACTATGAAATTTAGCAGAGGAAGTGTTCTA
GAACCCTTGGAGGAACAAGATGATACTCAGCGAAATTCCGGTACTTCAGT
TAGATTTCTTCCCGATAGGCAGATATTCACCACTACTACTCAGTTTGATT
TGGATGTCCTTACCCAGCGCCTCGAAGAACTCGCGTTCTTGAATGCTGGC
TTGGAGATCGTTCTCACGAAGGAGATCGATGGTGAAACTCGCCGTTTTTT
GCATGATGGCGGCATCGAAGAATATATCTCGGCTCTCAGTACGACCTACG
AATCTTTACACAAGGATCCTGAAACAATTTTTTTCTCCGGTGAGACGAAT
AACAACTTCGTAGAGGTTGCAATGCGCTGGAATGCGGACAGTTACTCGGA
TAAATTGATAGGCTTTGCCAACAACATCCGAACTAATGATGGTGGCAGTC
ACTTGGAAGGTTTAAGGGCAGCGTTGACTCGCACAATCAATCAACTGGCA
AGGAGAGCTGGAAAACTGAAGGACAGTGCCAATAATATCGGCGGGGAATA
CATTCGTGAAGGTTTAATAGCAATTGTTTCCGTTAAAGTGCCTAACCCGG
AATTTGAAGGCCAAACAAAGTCAAGACTCGGAAATCCTGAAGTTCGATCG
GCGGTAGACGGTATCGTTGCTCGTTCTTTGATAGACTTCTTTGATTTTAG
GCCCAACATACTCACCAGCGTTGTTGACAAAGCGATGTCCGCCCTTGCGG
CAGCAGAAGCTGCTCGACGAGCTCGGGATATTGTTCGACGGAAGACTGTG
CTCGAGAATTCAACACTTCCCGGAAAACTTGCGGACTGTTCATCACGAGA
TCCTAGTGCCTCGGAGATTTTTATCGTTGAAGGTGAAAGTGCTGGCGGTA
GTGCAAAGCAAGCTCGGGACCGTCAATTTCAAGCCATCCTGCCATTGAGG
GGCAAAATTCTTAACATCGAGAAGACTGATGACGCAAAAATATACCAGAA
TTCAGAGATTCAAGCGTTGATAACTGCTCTTGGCCTAGGCGTTCGTGGAG
ATGAGTTCAAAGCAAATCAGCTTCGATATCATCGTATAATCATTATGACG
GATGCCGATGTTGACGGTGCTCACATCCGTACCTTACTCCTGACTTTCTT
CTTTCGATACCAACGTGCTTTGATTGAAAATGGGTTTGTTTATATTGCAT
GCCCACCTCTTTACAAAATCGATCGCCGGCAGAAGAGTGTGTTCTTGTAT
TCAGACGAAGAACTTCAGGACTATGTGAAGGAAAAAATGCCTCCGAACGC
AAGATACACCGTACAACGTTTTAAAGGTCTTGGAGAGATGATGCCAGGCC
AGCTATGGAACACCACGATGAACCCCTACGAGAGACAAGTGAAACGAGTT
GAAATAGAGGATGCGATGCTTGCTGACCAAGTCTTCACAGTTTTGATGGG
AGACCGCGTCGCCCCTCGACGCGCGTTCATCGAATCTCACGTGGCATCTC
TTTCATTAGAAGATATTGACTACTGA

protein sequence of Gchil7501.t1

>Gchil7501.t1 ID=Gchil7501.t1|Name=Gchil7501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=692bp
MPRLRPAFVSSIAFRTHRLFCGSELTLSRRRRLFPTRPSFTSVRLTASLP
SRTQYGASDITVLEGLEPVRMRPGMYIGSTGSKGLHHLVFEVVDNAVDES
LAGFCKKITVILHADGSVSVQDDGRGIPIDKHTATGKSALETVMTVLHSG
GKFGGAGYSVSGGLHGVGVSVVNALSEWLSVKVWREGRRHTMKFSRGSVL
EPLEEQDDTQRNSGTSVRFLPDRQIFTTTTQFDLDVLTQRLEELAFLNAG
LEIVLTKEIDGETRRFLHDGGIEEYISALSTTYESLHKDPETIFFSGETN
NNFVEVAMRWNADSYSDKLIGFANNIRTNDGGSHLEGLRAALTRTINQLA
RRAGKLKDSANNIGGEYIREGLIAIVSVKVPNPEFEGQTKSRLGNPEVRS
AVDGIVARSLIDFFDFRPNILTSVVDKAMSALAAAEAARRARDIVRRKTV
LENSTLPGKLADCSSRDPSASEIFIVEGESAGGSAKQARDRQFQAILPLR
GKILNIEKTDDAKIYQNSEIQALITALGLGVRGDEFKANQLRYHRIIIMT
DADVDGAHIRTLLLTFFFRYQRALIENGFVYIACPPLYKIDRRQKSVFLY
SDEELQDYVKEKMPPNARYTVQRFKGLGEMMPGQLWNTTMNPYERQVKRV
EIEDAMLADQVFTVLMGDRVAPRRAFIESHVASLSLEDIDY*

mRNA from alignment at tig00000007_pilon:1620323..1622398+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7501.t1 ID=Gchil7501.t1|Name=Gchil7501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00000007_pilon:1620323..1622398+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCGTCTTCGTCCGGCCTTTGTGTCCAGTATTGCTTTCCGTACCCA
TCGTCTATTCTGTGGGTCCGAACTTACTTTGTCGCGACGTCGGAGGCTCT
TCCCAACTCGTCCTTCTTTCACCTCAGTTCGTTTAACCGCCTCCCTGCCC
TCGAGAACGCAGTATGGTGCCAGCGATATTACCGTGCTGGAAGGCTTAGA
GCCAGTGCGCATGCGACCGGGCATGTACATCGGCTCCACTGGTTCGAAAG
GGCTGCATCACCTCGTCTTTGAAGTCGTTGACAACGCGGTCGACGAGTCG
CTAGCCGGATTTTGCAAGAAAATTACCGTTATTCTTCATGCGGATGGTTC
TGTCAGTGTTCAAGACGATGGACGAGGGATACCAATTGATAAGCATACAG
CTACTGGTAAGAGTGCGTTGGAGACTGTTATGACTGTCTTACATTCCGGC
GGAAAATTTGGCGGAGCTGGATACTCGGTCTCTGGTGGTTTGCATGGCGT
GGGCGTCAGCGTGGTTAATGCGCTCAGCGAATGGCTTTCGGTCAAGGTAT
GGCGGGAAGGACGCCGCCACACTATGAAATTTAGCAGAGGAAGTGTTCTA
GAACCCTTGGAGGAACAAGATGATACTCAGCGAAATTCCGGTACTTCAGT
TAGATTTCTTCCCGATAGGCAGATATTCACCACTACTACTCAGTTTGATT
TGGATGTCCTTACCCAGCGCCTCGAAGAACTCGCGTTCTTGAATGCTGGC
TTGGAGATCGTTCTCACGAAGGAGATCGATGGTGAAACTCGCCGTTTTTT
GCATGATGGCGGCATCGAAGAATATATCTCGGCTCTCAGTACGACCTACG
AATCTTTACACAAGGATCCTGAAACAATTTTTTTCTCCGGTGAGACGAAT
AACAACTTCGTAGAGGTTGCAATGCGCTGGAATGCGGACAGTTACTCGGA
TAAATTGATAGGCTTTGCCAACAACATCCGAACTAATGATGGTGGCAGTC
ACTTGGAAGGTTTAAGGGCAGCGTTGACTCGCACAATCAATCAACTGGCA
AGGAGAGCTGGAAAACTGAAGGACAGTGCCAATAATATCGGCGGGGAATA
CATTCGTGAAGGTTTAATAGCAATTGTTTCCGTTAAAGTGCCTAACCCGG
AATTTGAAGGCCAAACAAAGTCAAGACTCGGAAATCCTGAAGTTCGATCG
GCGGTAGACGGTATCGTTGCTCGTTCTTTGATAGACTTCTTTGATTTTAG
GCCCAACATACTCACCAGCGTTGTTGACAAAGCGATGTCCGCCCTTGCGG
CAGCAGAAGCTGCTCGACGAGCTCGGGATATTGTTCGACGGAAGACTGTG
CTCGAGAATTCAACACTTCCCGGAAAACTTGCGGACTGTTCATCACGAGA
TCCTAGTGCCTCGGAGATTTTTATCGTTGAAGGTGAAAGTGCTGGCGGTA
GTGCAAAGCAAGCTCGGGACCGTCAATTTCAAGCCATCCTGCCATTGAGG
GGCAAAATTCTTAACATCGAGAAGACTGATGACGCAAAAATATACCAGAA
TTCAGAGATTCAAGCGTTGATAACTGCTCTTGGCCTAGGCGTTCGTGGAG
ATGAGTTCAAAGCAAATCAGCTTCGATATCATCGTATAATCATTATGACG
GATGCCGATGTTGACGGTGCTCACATCCGTACCTTACTCCTGACTTTCTT
CTTTCGATACCAACGTGCTTTGATTGAAAATGGGTTTGTTTATATTGCAT
GCCCACCTCTTTACAAAATCGATCGCCGGCAGAAGAGTGTGTTCTTGTAT
TCAGACGAAGAACTTCAGGACTATGTGAAGGAAAAAATGCCTCCGAACGC
AAGATACACCGTACAACGTTTTAAAGGTCTTGGAGAGATGATGCCAGGCC
AGCTATGGAACACCACGATGAACCCCTACGAGAGACAAGTGAAACGAGTT
GAAATAGAGGATGCGATGCTTGCTGACCAAGTCTTCACAGTTTTGATGGG
AGACCGCGTCGCCCCTCGACGCGCGTTCATCGAATCTCACGTGGCATCTC
TTTCATTAGAAGATATTGACTACTGA

Coding sequence (CDS) from alignment at tig00000007_pilon:1620323..1622398+

>Gchil7501.t1 ID=Gchil7501.t1|Name=Gchil7501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2076bp|location=Sequence derived from alignment at tig00000007_pilon:1620323..1622398+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCGTCTTCGTCCGGCCTTTGTGTCCAGTATTGCTTTCCGTACCCA
TCGTCTATTCTGTGGGTCCGAACTTACTTTGTCGCGACGTCGGAGGCTCT
TCCCAACTCGTCCTTCTTTCACCTCAGTTCGTTTAACCGCCTCCCTGCCC
TCGAGAACGCAGTATGGTGCCAGCGATATTACCGTGCTGGAAGGCTTAGA
GCCAGTGCGCATGCGACCGGGCATGTACATCGGCTCCACTGGTTCGAAAG
GGCTGCATCACCTCGTCTTTGAAGTCGTTGACAACGCGGTCGACGAGTCG
CTAGCCGGATTTTGCAAGAAAATTACCGTTATTCTTCATGCGGATGGTTC
TGTCAGTGTTCAAGACGATGGACGAGGGATACCAATTGATAAGCATACAG
CTACTGGTAAGAGTGCGTTGGAGACTGTTATGACTGTCTTACATTCCGGC
GGAAAATTTGGCGGAGCTGGATACTCGGTCTCTGGTGGTTTGCATGGCGT
GGGCGTCAGCGTGGTTAATGCGCTCAGCGAATGGCTTTCGGTCAAGGTAT
GGCGGGAAGGACGCCGCCACACTATGAAATTTAGCAGAGGAAGTGTTCTA
GAACCCTTGGAGGAACAAGATGATACTCAGCGAAATTCCGGTACTTCAGT
TAGATTTCTTCCCGATAGGCAGATATTCACCACTACTACTCAGTTTGATT
TGGATGTCCTTACCCAGCGCCTCGAAGAACTCGCGTTCTTGAATGCTGGC
TTGGAGATCGTTCTCACGAAGGAGATCGATGGTGAAACTCGCCGTTTTTT
GCATGATGGCGGCATCGAAGAATATATCTCGGCTCTCAGTACGACCTACG
AATCTTTACACAAGGATCCTGAAACAATTTTTTTCTCCGGTGAGACGAAT
AACAACTTCGTAGAGGTTGCAATGCGCTGGAATGCGGACAGTTACTCGGA
TAAATTGATAGGCTTTGCCAACAACATCCGAACTAATGATGGTGGCAGTC
ACTTGGAAGGTTTAAGGGCAGCGTTGACTCGCACAATCAATCAACTGGCA
AGGAGAGCTGGAAAACTGAAGGACAGTGCCAATAATATCGGCGGGGAATA
CATTCGTGAAGGTTTAATAGCAATTGTTTCCGTTAAAGTGCCTAACCCGG
AATTTGAAGGCCAAACAAAGTCAAGACTCGGAAATCCTGAAGTTCGATCG
GCGGTAGACGGTATCGTTGCTCGTTCTTTGATAGACTTCTTTGATTTTAG
GCCCAACATACTCACCAGCGTTGTTGACAAAGCGATGTCCGCCCTTGCGG
CAGCAGAAGCTGCTCGACGAGCTCGGGATATTGTTCGACGGAAGACTGTG
CTCGAGAATTCAACACTTCCCGGAAAACTTGCGGACTGTTCATCACGAGA
TCCTAGTGCCTCGGAGATTTTTATCGTTGAAGGTGAAAGTGCTGGCGGTA
GTGCAAAGCAAGCTCGGGACCGTCAATTTCAAGCCATCCTGCCATTGAGG
GGCAAAATTCTTAACATCGAGAAGACTGATGACGCAAAAATATACCAGAA
TTCAGAGATTCAAGCGTTGATAACTGCTCTTGGCCTAGGCGTTCGTGGAG
ATGAGTTCAAAGCAAATCAGCTTCGATATCATCGTATAATCATTATGACG
GATGCCGATGTTGACGGTGCTCACATCCGTACCTTACTCCTGACTTTCTT
CTTTCGATACCAACGTGCTTTGATTGAAAATGGGTTTGTTTATATTGCAT
GCCCACCTCTTTACAAAATCGATCGCCGGCAGAAGAGTGTGTTCTTGTAT
TCAGACGAAGAACTTCAGGACTATGTGAAGGAAAAAATGCCTCCGAACGC
AAGATACACCGTACAACGTTTTAAAGGTCTTGGAGAGATGATGCCAGGCC
AGCTATGGAACACCACGATGAACCCCTACGAGAGACAAGTGAAACGAGTT
GAAATAGAGGATGCGATGCTTGCTGACCAAGTCTTCACAGTTTTGATGGG
AGACCGCGTCGCCCCTCGACGCGCGTTCATCGAATCTCACGTGGCATCTC
TTTCATTAGAAGATATTGACTACTGA